XLOC_008936 (cldnf)


Basic Information

Item Value
gene id XLOC_008936
gene name cldnf
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 2650787 ~ 2652640 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00017650
ACACACATATGGGTTAGGATCACACCAACGGCTGCTTTTGCTTATCATCCCACAACGGCTTCAATATGGGAAGGATTGCTAAAGAAGTGGCCGGCCAGACCCTGTGCTTCATCGGTTTTGTGGGCATCTGCATCTGCTGTGGCATTCCCATGTGGCGGGTCACCACCTACATCGGCGCCAACATCGTGACAGGCCAGATCGTGTGGGACGGCCTGTGGATGAACTGCGTGATGCAGAGCACGGGACAGATGCAGTGCAAAATACAGGACTCCATCATGAACCTGACCCAGGATCTGCAGGTGGCGCGCGCACTGGTCATCATCTCCATACTGATCGGATTCATGGGCATGCTGCTGACGTTTATTGGTGGACAGTGCAGTAGCTGCCTGAAGAACGAGTCCTCCATGGCTAAAGTGCTCATTCTGGGAGGCATCCTGTGCATTGTTGCTGGAGTCCTGCTTCTGATTCCTGTGTGCTGGTCTGCGGCGTACACCATCTCCGATTATGTTAGTGTGACCACCATTCAGACGCAAAAGAGAGAGCTTGGAGCGTCTATATATGTCGGCTGGGGTGCTTCAGCGTTCCTGTTATTCGGAGGGATTATTCTGTGCACTTCTTGCCCACCCAGAGAAAATATCTACCCACAGTACCCAGGCATGTACCCGTACCAGGGACCGGTGTATGGGCATCAGTACGCTCCGAGTACAGTTTACAAACCGTATCATCCTCCTGTTGCTTATACACCTGCTCCAAGGCAATATCTTTAACACAAAGGACGGACGTCGTCTAAAGACTACTCCTGAAGATGGAAAGAATTGTGTTGAGCTGAATcaaaacaattcttgagtttttggggagacaatttaaatgttttaagctcAATCAACCTCAATTTGTAAAGACATTTAAGTTGActtgatcgatttgtgttgggacagcatggagggattgtgtggaactcaaCACTTATAGCGTGTATctgtattttaaagtgataattcacccaaaaatgaagattctgtcatcatttactcactatttttgtttttatttcttgttaAGCACAGAAAGGAAGgaaactggaaacctgtaaccattgacttccattgtatttgttgtaCTCAATGGTTTCAGTcagtcagcattcttcaaaatatcttcctttgtgttcaacagaaactggtaaaggtttggaaacacttgagggagaataaataaggcggtaaatgtagatttttgtgtgaactgtccctttaattcagTGTTTATCTGAATTGAATgtatttaaaagcaattttattgAGGTCTTGTACTTCCCCAAGCTTTAAACGAAGATGATCTGGAAAAGCTAAAACTTGTTGGTCTTGTTTTTGAGATTTTCGCAGTGCTAATGAATGATGTTTGTTTCAACATGGTCATATTTGAAGGTACTATAAAGTATATTTCTTGACTGACTCTCTGAATAAATACTCTAATGCCATTAATCTGATCAAAATCAAGATCACAAAGACTTTTTACTTCCAAAAACTCTTTACTCCAACATATTTCTCAAGGAGGAACAATATAAAGACAATATCTGTTGCATATTCATCTGCTCCGTCAATATCTTTAACTCAAAGGACGGACATCTTCTAAAACTGCTCCTGAAGATGGAAAGAATTGTGTTGAGCTGAATcaaaacaattcttgagtttttgaggagacaatttaattgttttaagctCAATCAACCTCAATTTGTAAAGACATTTAAGTTGActtgatcgatttgtgttgggacagcatgaagggaTTGTGCGGAACTCAACATTTACAGcgtatatctgtattttaaagtgataattcacccaaaaa

Function

symbol description
cldnf Predicted to enable structural molecule activity. Predicted to be involved in bicellular tight junction assembly and cell adhesion. Predicted to be located in cell junction and membrane. Predicted to be integral component of membrane. Predicted to be active in bicellular tight junction and plasma membrane. Is expressed in several structures, including EVL; digestive system; ectoderm; hatching gland; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in ovarian cancer and pancreatic cancer. Orthologous to human CLDN4 (claudin 4).

GO:

id name namespace
GO:0070830 bicellular tight junction assembly biological_process
GO:0007155 cell adhesion biological_process
GO:0005886 plasma membrane cellular_component
GO:0005923 bicellular tight junction cellular_component
GO:0030054 cell junction cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-010328-6 Predicted to enable structural molecule activity. Predicted to be involved in bicellular tight junction assembly and cell adhesion. Predicted to be located in cell junction and membrane. Predicted to be integral component of membrane. Predicted to be active in bicellular tight junction and plasma membrane. Is expressed in several structures, including EVL; digestive system; ectoderm; hatching gland; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in ovarian cancer and pancreatic cancer. Orthologous to human CLDN4 (claudin 4).

Ensembl:

ensembl_id ENSDARG00000043133

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00017650 True 1854 mRNA 0.42 1 2650787 2652640

Neighbor

gene id symbol gene type direction distance location
XLOC_008935 cldne coding downstream 9821 2638884 ~ 2640966 (-)
XLOC_008934 cldnj coding downstream 17896 2631421 ~ 2632891 (-)
XLOC_008933 NA coding downstream 24859 2618279 ~ 2625928 (-)
XLOC_008932 NA coding downstream 39617 2598804 ~ 2611170 (-)
XLOC_008931 dnajc30b coding downstream 54662 2589949 ~ 2596125 (-)
XLOC_008937 cldna coding upstream 2926 2655566 ~ 2657508 (-)
XLOC_008938 si:ch211-235m3.5 coding upstream 48006 2700646 ~ 2726662 (-)
XLOC_008939 ppp5c coding upstream 75030 2727670 ~ 2754056 (-)
XLOC_008940 CABZ01086049.1 coding upstream 83743 2736383 ~ 2736498 (-)
XLOC_008941 tgfb1a coding upstream 123866 2776506 ~ 2803313 (-)
XLOC_008928 NA non-coding downstream 322503 2323666 ~ 2328284 (-)
XLOC_008927 AL954387.2 non-coding downstream 384704 2265969 ~ 2266083 (-)
XLOC_008910 LO017713.1 non-coding downstream 1328881 1321790 ~ 1321906 (-)
XLOC_008942 NA non-coding upstream 160876 2813516 ~ 2816142 (-)
XLOC_008946 CABZ01086029.1 non-coding upstream 265617 2918257 ~ 2931021 (-)
XLOC_008951 NA non-coding upstream 462697 3115337 ~ 3116262 (-)
XLOC_008952 NA non-coding upstream 507798 3160438 ~ 3162459 (-)

Expression


Co-expression Network