XLOC_008938 (si:ch211-235m3.5)


Basic Information

Item Value
gene id XLOC_008938
gene name si:ch211-235m3.5
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 2700646 ~ 2726662 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00017652
TACACGACGTCTAGTAAACGATTAACCCGAAGAATCACCTGAAAGTAAGACGCAAGCCCAGCCCACTGCATTTCCCATCCCCATTATCTGCCTTCAAACTAAACCAGTGACAACAACTCGACGACTCGCTTTCACAGGCATACATGAAGACCCGAGGCTCTTTTTAAATCTCTTCGCACTGGAGCTCCATCAGCTATTAAAATGGAAGTGAGCGAGGATTTCTACATGTTTGAGTTCAGCAATGCTGAAGATGATGCGCCGGTTTATCAGGACTCTGAGGACTTGTTTGCGGCTCTTCGGCAAAAGGAGGATGAAGTTATACTCGCTGCTCAGGTGGGAAATGCTTTGCTCATGGAAAACAGACAGATGAAGGAAGAAAGGGACACTTTTCTGGAAAAATACACACAGCAGATTGAGGAGCTCCAGCAGAGCAGGTACGAGCTGCAGGTGAAGCTGGAGAACTGCCAGGCTCAGTGGGAGGGTCAGGTGTCGGAGCTGGAGCGAGACGTGCAGGAACTGCAAGCGCAGGTGGAGGAAATGAAGCAAAGTCTCCATGAGGCTGAAATAGAGAAGAGCAGACTGAAGCAAGAGCACGGCGAACAGTGCCAGAGACTCAGACAGCAACTGCAGAGGGGAATAGAGGTGGAGCGAGCCATGACCGGCGAACTGCAAAGACTGAAGCAGGAAATGAGAGAAAGAGGACAGGCCAGACCTCAAGATGAAGAGATGATCAATGCTCTTAGAGAACAGgttGCACGACTCACACAGAGAGAGCAAACACTGGAGCAGCGCTTGAAAATGTCCTGTCATGAGAATGAAGAACTGAGAGACACGGTGTCCTCACTATACACACGCCTGGATCTGCAGGAACAAcagactcacaaacacacacaacagCTGGCAGAGGCCTGGCAGGAAGTTGACAGGGTTCGTTTCTGGGCACAAGATCTGCAGAGTCAGGTAGTGGAGCTCCAGGATGAAGTGGCGCTCCAGGAGAAGAGTCACAGTGACACATCTTTACTGTCCGAACTCGAAAACAACCTGGACGTCACAAACTGGAGCCTGAACACAGAGCAGATCTCTCAGGAGGTGCACCACATCCTGGAACTGCTTCAACCTGTAATCTGCGGCTCAGTAGCTGAACGGGACTCAGATGACAGCCTGCAGGGCATGATGGGACAGTTGAAACATGCTGCAGAATGGATAGCACAGAGTCAAACACAACAGAACGAGAGTCTTTTAGCAGAAAACGCCAAACTCAAGCTGCAAACCGAGAGACTTCTGGATGAGGAGGTGGTCCAGCAGGCCTTAAAGGACCGCGATCATGCCTTTGCAAAGAAGACAGCGATGGAAGCAGAGCTGCTGAAGACTAAACAAGATATGATGTGCTTAAACAACCAACTCCTGGAAGCCATCCAGCGAAAACTTGAGCTCTCGCAGGAACTCGAAGCCTGGAAGGACGATATGCAAGTTATCATCAACCAACAGCTCAGGAGCCAACAGGAAACAGAACAGCAGCAACGGAAGTCATCTGTCGGTCGTCTTTCTTTCCTGCACAAATCCAGACGGCCTTCATCTTCGCCGTCCACGTTTTCAGAGATCAGTTCAGTGCAAAACCACTCGCCTTGGAGAGACTGGctcaaaatcaacaaataaacctGTTGCACGATCTCACCAGCAGATCCCCTGCCAAACTGAGACCTTATTAGATCAGTGTTGAGTTAACGAACAACTCTAATGTAAAAGACTCTTCCATAATAGACATTTACATCTCACATTGGAATTGCTCCTGCCAAAAGTTACGTCTTGACATTCAGTACAATCGAACACCTTACTAATGACGTACAACTGTAATGAATCCTGATCAATTTCATgtaaagaggtggtccactacaatatcgtatggtaaactt

Function

symbol description
si:ch211-235m3.5 Predicted to be involved in Golgi to secretory granule transport and vesicle transport along microtubule.

GO:

id name namespace
GO:0047496 vesicle transport along microtubule biological_process
GO:0055107 Golgi to secretory granule transport biological_process

KEGG: NA

ZFIN:

id description
ZDB-GENE-131121-233 Predicted to be involved in Golgi to secretory granule transport and vesicle transport along microtubule.

Ensembl:

ensembl_id ENSDARG00000079385

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00017652 True 1913 mRNA 0.48 9 2700646 2726662

Neighbor

gene id symbol gene type direction distance location
XLOC_008937 cldna coding downstream 43138 2655566 ~ 2657508 (-)
XLOC_008936 cldnf coding downstream 48006 2650787 ~ 2652640 (-)
XLOC_008935 cldne coding downstream 59680 2638884 ~ 2640966 (-)
XLOC_008934 cldnj coding downstream 67755 2631421 ~ 2632891 (-)
XLOC_008933 NA coding downstream 74718 2618279 ~ 2625928 (-)
XLOC_008939 ppp5c coding upstream 1008 2727670 ~ 2754056 (-)
XLOC_008940 CABZ01086049.1 coding upstream 9721 2736383 ~ 2736498 (-)
XLOC_008941 tgfb1a coding upstream 49844 2776506 ~ 2803313 (-)
XLOC_008942 NA coding upstream 86854 2813516 ~ 2816142 (-)
XLOC_008943 CABZ01086041.1 coding upstream 94106 2820768 ~ 2841677 (-)
XLOC_008932 NA non-coding downstream 89476 2598804 ~ 2611170 (-)
XLOC_008928 NA non-coding downstream 372362 2323666 ~ 2328284 (-)
XLOC_008927 AL954387.2 non-coding downstream 434563 2265969 ~ 2266083 (-)
XLOC_008910 LO017713.1 non-coding downstream 1378740 1321790 ~ 1321906 (-)
XLOC_008946 CABZ01086029.1 non-coding upstream 191595 2918257 ~ 2931021 (-)
XLOC_008951 NA non-coding upstream 388675 3115337 ~ 3116262 (-)
XLOC_008952 NA non-coding upstream 433776 3160438 ~ 3162459 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000091_00309199_00325636 NA coding CI01000091 null 308968 ~ 325871 (+)