Fish Transcriptome and Expression Database

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model fish

XLOC_008940 (CABZ01086049.1)

Basic Information

Item	Value
gene id	XLOC_008940
gene name	CABZ01086049.1
gene type	non-coding
species	zebrafish (Danio rerio)
category of species	model fish

Chromosome Information

Item	Value
chromosome id	NC_007126.7
NCBI id	CM002899.2
chromosome length	48040578
location	2736383 ~ 2736498 (-)
genome version	GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00017655
gccacagccatgtcaccctgcagcccaagagcagtcactcactgaagctaagcagggctgagcatggtcagtacctggatgggagaccacatgggaaagttaggttgctgatggaa

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id

ENSDARG00000106131

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TCONS_00017655	True	116	rRNA	0.55	1	2736383	2736498

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
XLOC_008938	si:ch211-235m3.5	coding	downstream	9721	2700646 ~ 2726662 (-)
XLOC_008937	cldna	coding	downstream	78875	2655566 ~ 2657508 (-)
XLOC_008936	cldnf	coding	downstream	83743	2650787 ~ 2652640 (-)
XLOC_008935	cldne	coding	downstream	95417	2638884 ~ 2640966 (-)
XLOC_008934	cldnj	coding	downstream	103492	2631421 ~ 2632891 (-)
XLOC_008941	tgfb1a	coding	upstream	40008	2776506 ~ 2803313 (-)
XLOC_008942	NA	coding	upstream	77018	2813516 ~ 2816142 (-)
XLOC_008943	CABZ01086041.1	coding	upstream	84270	2820768 ~ 2841677 (-)
XLOC_008944	ankrd49	coding	upstream	114467	2850965 ~ 2857961 (-)
XLOC_008945	guca1c	coding	upstream	148213	2884711 ~ 2903475 (-)
XLOC_008933	NA	non-coding	downstream	110455	2618279 ~ 2625928 (-)
XLOC_008932	NA	non-coding	downstream	125213	2598804 ~ 2611170 (-)
XLOC_008928	NA	non-coding	downstream	408099	2323666 ~ 2328284 (-)
XLOC_008927	AL954387.2	non-coding	downstream	470300	2265969 ~ 2266083 (-)
XLOC_008910	LO017713.1	non-coding	downstream	1414477	1321790 ~ 1321906 (-)
XLOC_008946	CABZ01086029.1	non-coding	upstream	181759	2918257 ~ 2931021 (-)
XLOC_008951	NA	non-coding	upstream	378839	3115337 ~ 3116262 (-)
XLOC_008952	NA	non-coding	upstream	423940	3160438 ~ 3162459 (-)
XLOC_008957	NA	non-coding	upstream	1018068	3754566 ~ 3760957 (-)

Expression

Co-expression Network