XLOC_008961 (si:ch73-309g22.1)


Basic Information

Item Value
gene id XLOC_008961
gene name si:ch73-309g22.1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 3970797 ~ 3976035 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00017680
tcctttttctctctccctctcttgtgCATTTAGATGGAGTCGGCAGCTTCAGAAATTCTTCGAAGTGCAGAACCACTAACCAGCTTCACCGCTGACCTCAATGGCATCATAGAGGCAAATTGGACTCGCACAGAAGCAAATGTTTCCTGCGAATTGTCCAAGATCCCAGCTCATCCTGTTTTCATATTTGCATACTCTCTTGTGTTTCTTGTCAGTCTGGTGCTGAACTGCGTCACGATGCGGGTGTATTTCTGCAACAGACAACGTGTACAATCCAGTGTCACAGTCTACATGAAGAACCTGGCAGCGGCTGATTTCTTCCTTTGCCTTTGTTTACCTTTGCGCATTGCTAACTATGCTAGCAGTTCAGAGACCATGCGCAATATTTACTGCAGCTTCGGAGCAACTGGATTTTATATCAACATGTATGCAAGCATTCTCTTCATGGACTTCATCGCTGCAAACAGGTACCTGAAGATAGCCCGTCCATTGGAGACTCACACCCTTCAGACAGTCCGTGCCGCCCGCCACATTTCTGTAGCGACGTGGATCTCTCTGTTGGCCTTGTCTTCAGTCTACCTGATCCTCTTTCTCAAGACATCCTGGAGTTACACTTACACCTCTGAGAAAATGGGCTGCGAGGCTTTGCACAGTCCCCAGCTCAGCCTGGCCTACAAAATCACTCACAGCGTGTCCATGGTGGTCTTCATTTTTGTGCTTGTATCCCTGATCGGTCTCTATTGGCTGACGCTACAAAAAATCCGGGAAGCTCAATTGTCCACGCAGGCCACGTCCAgcaaaaacatgttcaaaaagtCGAAGCGCAACATGCTGGTGCTGGTGCTGGTTTTCTGCGTGTGCTTTGTGCCCTATCACTTGGTGAGACTTCCTTACGCGTTTATCAAACTTCAGACTAAGTCTTGCACGCTGCAGGCGGTCTACGTCCTGAAGGAACTGACGGTTCTGCTATCGGCGCTGAATGCGTGTTTGGATCCACTCATATACTTTATCTTCTGCAAGGCCTTCAGAGCCCAGCTGAACCTCAGGAAGAGGGGAGATTCAGGGATAAGCAGCGACGATAAAGGCAACAAAAGACGAATGAGCAACATGTTGACCTACATCGAGACAAAGGTGTCCACGCTAAGACGTGAAAGTGTTATCTAGCACACAAATCCTAAGGGATGACAACAAGGTCCATTATAGAGTGGTTCGTTTAAATGGTACCTGTATTGTTTACGAATATAAGACTTCTTCCTTTTTCTCTTCCATTGCTtgtaatgcctcattcacactggcatcgactttgtagctgcctgtcgctcttgGTGGCGgcctgctgcaaacgcaggtctgcGAAGGTCTACAGCAGGAGTCACCAAatctgttcctggagggccggtgtcctgcagattttagctccaaccctaatcaaacacacctgaacaagctaaacaaggtcttactaggtatacttgaaacatccaggcaggtgtgttgaggtaagttggagctaaaccctgcaggaacaccggccctccaggaccgagactggtgacccctggtctacagcaTGGAGAATACAACCAGCCTTTTAACGAGCTgcgagaggatcatgtgagctctacAGGTGCTTCTGTTAGCTGTCGCTCAATAAAGacactcttcatttgcataaagttgaaggattcttaTATTTGTTGCATCACTTGACATGCCCACCTGGTCACCAACGGTCGCCGGAAGTCGCTCATTCTCAGTTGAAATGAACAGTCGCTTGTTGTTTTGCCGCTGTGAGtcgctcgtagtgtgaatgaggcttaaatCAGTTGGAAGACATTCATTTTGAAGAtgctgattgatttttttttctgaatttggGCTGTAAATATGCCTTATTATATGCCTTAATACCAAAAACACAAACAGGAGTTGTGTTTGTTGTAGTAGTTCTTATAATTCTTTGacataaagtgacttttattactATCAAATCATTTCTGTTtgcaataaatgctatttttttaacttgatttttttcaaaacatcctgaagaaaaaagcaagaaaaaagtcttaaaattaatAAAGACCAAATCAGTATTTGACTGTGATTTTCTGAAGGACACCGAAGACTGGAAGAAGGAAGCAAAAAAACTGCCagcagaaatatataaataatatttaaaaaatattaaaaaattatattttataaaagctTTACTATATTTTTCCTATTTTTGTCTGTGTAAGTAGAAGagacttttttttccaaaaggtttagaataataataataataagaagaagaagaagaagaagaagaagaagagaaatgATGAATAAAATGAAACCTTGTATATAATGTTGGAAATCACGTGGACATGTAGATACATAATTGTTAtgtaaaaagttttattgttgtGCATTTCTAATATTGTTGCTATTTTTATCAGAAGATTGTACATTTATACTGAAtaaagttggtgattcattccactgtggcgacacttgaatgaatgaatgaataatattgaataaaaagtaaattgTCA

Function

symbol description
si:ch73-309g22.1 Predicted to enable G protein-coupled purinergic nucleotide receptor activity. Predicted to be involved in G protein-coupled receptor signaling pathway. Predicted to act upstream of or within signal transduction. Predicted to be located in membrane. Predicted to be integral component of membrane.

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000099495

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00017680 True 2549 mRNA 0.42 2 3970797 3976035

Neighbor

gene id symbol gene type direction distance location
XLOC_008960 gpr171 coding downstream 7148 3957876 ~ 3963649 (-)
XLOC_008959 clrn1 coding downstream 13891 3947696 ~ 3956906 (-)
XLOC_008958 mindy4b coding downstream 30126 3926095 ~ 3940671 (-)
XLOC_008957 NA coding downstream 209840 3754566 ~ 3760957 (-)
XLOC_008956 lpar6a coding downstream 234024 3656212 ~ 3736773 (-)
XLOC_008962 CR626884.4 coding upstream 33537 4009572 ~ 4011013 (-)
XLOC_008963 CR626884.6 coding upstream 42327 4018362 ~ 4027367 (-)
XLOC_008964 P2RY14 coding upstream 60674 4036709 ~ 4037626 (-)
XLOC_008965 CR626884.5 coding upstream 73187 4049222 ~ 4053149 (-)
XLOC_008966 CR626884.2 coding upstream 85965 4062000 ~ 4067158 (-)
XLOC_008952 NA non-coding downstream 808338 3160438 ~ 3162459 (-)
XLOC_008951 NA non-coding downstream 854535 3115337 ~ 3116262 (-)
XLOC_008946 CABZ01086029.1 non-coding downstream 1039776 2918257 ~ 2931021 (-)
XLOC_008942 NA non-coding downstream 1154655 2813516 ~ 2816142 (-)
XLOC_008970 NA non-coding upstream 187543 4163578 ~ 4174873 (-)
XLOC_008973 CU467614.1 non-coding upstream 389123 4365158 ~ 4365272 (-)
XLOC_008997 FO704791.1 non-coding upstream 1407027 5383062 ~ 5383180 (-)
XLOC_009008 NA non-coding upstream 1922375 5898410 ~ 5901982 (-)
XLOC_009014 NA non-coding upstream 2992346 6968381 ~ 6976921 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000092_01110360_01113717 NA coding CI01000092 null 1110279 ~ 1115228 (-)