Fish Transcriptome and Expression Database

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model fish

XLOC_008973 (CU467614.1)

Basic Information

Item	Value
gene id	XLOC_008973
gene name	CU467614.1
gene type	non-coding
species	zebrafish (Danio rerio)
category of species	model fish

Chromosome Information

Item	Value
chromosome id	NC_007126.7
NCBI id	CM002899.2
chromosome length	48040578
location	4365158 ~ 4365272 (-)
genome version	GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00017694
aacagCAGCtacctctctgcaactctcacatggccgccctctgaagctaagcaggactgcaACCGGTCAGgtcctggatgggagaccacatgggataGCTAGGATGCTGCCGGAA

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id

ENSDARG00000114559

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TCONS_00017694	True	115	rRNA	0.57	1	4365158	4365272

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
XLOC_008971	ece2b	coding	downstream	51061	4172288 ~ 4314097 (-)
XLOC_008970	NA	coding	downstream	190285	4163578 ~ 4174873 (-)
XLOC_008969	ANO7	coding	downstream	212576	4128560 ~ 4152582 (-)
XLOC_008968	rnf168	coding	downstream	241059	4101254 ~ 4124099 (-)
XLOC_008967	si:dkey-83h2.3	coding	downstream	270270	4085623 ~ 4094888 (-)
XLOC_008974	tfdp2	coding	upstream	56525	4421797 ~ 4528387 (-)
XLOC_008975	rffl	coding	upstream	183968	4549240 ~ 4580763 (-)
XLOC_008976	eif4h	coding	upstream	219994	4585266 ~ 4616928 (-)
XLOC_008977	lipt2	coding	upstream	592512	4957784 ~ 4969525 (-)
XLOC_008978	defbl3	coding	upstream	645808	5011080 ~ 5016039 (-)
XLOC_008957	NA	non-coding	downstream	604201	3754566 ~ 3760957 (-)
XLOC_008952	NA	non-coding	downstream	1202699	3160438 ~ 3162459 (-)
XLOC_008951	NA	non-coding	downstream	1248896	3115337 ~ 3116262 (-)
XLOC_008946	CABZ01086029.1	non-coding	downstream	1434137	2918257 ~ 2931021 (-)
XLOC_008997	FO704791.1	non-coding	upstream	1017790	5383062 ~ 5383180 (-)
XLOC_009008	NA	non-coding	upstream	1533138	5898410 ~ 5901982 (-)
XLOC_009014	NA	non-coding	upstream	2603109	6968381 ~ 6976921 (-)
XLOC_009015	CR396585.2	non-coding	upstream	2643550	7008822 ~ 7008938 (-)
XLOC_009016	CR396585.1	non-coding	upstream	2666825	7032097 ~ 7034722 (-)

Expression

Co-expression Network