XLOC_008978 (defbl3)


Basic Information

Item Value
gene id XLOC_008978
gene name defbl3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 5011080 ~ 5016039 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00017713
ATGAGCTACAATACGGGAACTAACATGAGGACTCTGGGACTGATTATTTTTGCTCTGCTGCTGCTGACAGCCAGCCAAGCCAATGATACAGACGTGCAGAGATGGACATGCGGATACCGAGGGCTATGCAGGAAGCACTGCTATGCACGGGAGTATATGATTGGTTATCGAGGCTGCCCTCGCAGATACAGGTGCTGTGCTTTGCGATTTTAACATTTGCGAAGAAGCTCCTGCTTGCCAAGACTGCGTGCAGAACCTGCTGTGTTGATTTACAAATGTTAGCATAATAGCGCGGTCGCATTTGTGAAATTCAAGGTCTGCCGTCAACAACAAGCAGTTTCTGTTGGTCAGTGCTACAAATTCCAGTGACCACCTTGAACATGAGCAGATTCTGCAATGGGAACTTTTCCTACAAAATCGAAACTGTCGATCATTCATATTTGAAATTTGCTGAATTCCTATCTGATTTCCCCTTCGAAATTGAGCAGAGCTACTATAAATGTGACCGCACATGAAGAATGATTTATGCTGCAAAATGTAA

Function

symbol description
defbl3 Predicted to act upstream of or within defense response to bacterium and innate immune response. Predicted to be located in extracellular region. Is expressed in digestive system; gill; integument; muscle cell; and pleuroperitoneal region.

GO:

id name namespace
GO:0045087 innate immune response biological_process
GO:0042742 defense response to bacterium biological_process
GO:0006952 defense response biological_process
GO:0005576 extracellular region cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-070207-3 Predicted to act upstream of or within defense response to bacterium and innate immune response. Predicted to be located in extracellular region. Is expressed in digestive system; gill; integument; muscle cell; and pleuroperitoneal region.

Ensembl:

ensembl_id ENSDARG00000097181

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00017713 True 541 mRNA 0.45 3 5011080 5016039

Neighbor

gene id symbol gene type direction distance location
XLOC_008977 lipt2 coding downstream 41555 4957784 ~ 4969525 (-)
XLOC_008976 eif4h coding downstream 394152 4585266 ~ 4616928 (-)
XLOC_008975 rffl coding downstream 430317 4549240 ~ 4580763 (-)
XLOC_008974 tfdp2 coding downstream 482693 4421797 ~ 4528387 (-)
XLOC_008972 atp1b3b coding downstream 595163 4353161 ~ 4415917 (-)
XLOC_008979 or128-10 coding upstream 139098 5155137 ~ 5157572 (-)
XLOC_008980 or126-7 coding upstream 146235 5162274 ~ 5165013 (-)
XLOC_008981 or126-5 coding upstream 151651 5167690 ~ 5172170 (-)
XLOC_008982 or126-4 coding upstream 159554 5175593 ~ 5178899 (-)
XLOC_008983 or126-3 coding upstream 166815 5182854 ~ 5184186 (-)
XLOC_008973 CU467614.1 non-coding downstream 645808 4365158 ~ 4365272 (-)
XLOC_008970 NA non-coding downstream 836207 4163578 ~ 4174873 (-)
XLOC_008957 NA non-coding downstream 1250123 3754566 ~ 3760957 (-)
XLOC_008952 NA non-coding downstream 1848621 3160438 ~ 3162459 (-)
XLOC_008951 NA non-coding downstream 1894818 3115337 ~ 3116262 (-)
XLOC_008997 FO704791.1 non-coding upstream 367023 5383062 ~ 5383180 (-)
XLOC_009008 NA non-coding upstream 882371 5898410 ~ 5901982 (-)
XLOC_009014 NA non-coding upstream 1952342 6968381 ~ 6976921 (-)
XLOC_009015 CR396585.2 non-coding upstream 1992783 7008822 ~ 7008938 (-)
XLOC_009016 CR396585.1 non-coding upstream 2016058 7032097 ~ 7034722 (-)

Expression


Co-expression Network