XLOC_008982 (or126-4)


Basic Information

Item Value
gene id XLOC_008982
gene name or126-4
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 5175593 ~ 5178899 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00017717
ACTGATACAACTATGTATGCTACTGTTTGAGAATTTCTTGTCATTGATGGTGCTTCTTCATCTACAGATTCCTACTGTGGCTATTCAAATTAATTGATGTTTACGAATAATTTGTTTTCTAATTAGTTTTCAAGCAAACAGTCCATATAATAGTGGCATATTATTCAAGATGCAGTCACTGTGGAAGAATGAGTCCAGCGTCTCAGTCTTTACACTCTCTGCTCTGAGTGAAACAATGGAGAACAGATATGTTTTGTTAACTTTCACCGCATTGTTTTATCCTCTGGTTGTCTTCTGTAATGTAACTGTGATCCTGACTATTTTCTTACATAAGAAGCTTCATGAACCAatgtatgtgtttatatgcaATCTATGTGTAAATGGGGTTTATGGCACTTCTGGATTCTACCCTAAGTTCATGTATGATTTGTTAGCCCAGGATCAAGTGATTTCTTATGCTGGATGTATGATACAGATACTTGTCATTTATTCATATCTTATTTGTGACTTCTCAACACTAACCGTGATGGCGTATGACAGGTACGTGGCAATATGTAGACCACTGGAGTATCATTCAATAATGACTAATCagaaaatttttaaatgtattcttttCTGTTGGCTGCCTGCGATATTTTCCATCTCTTTTCTGATTTTATTGCTAGTTAGGCTGCCTTTATGTGGCTCTACTATCGAAAAGTTATATTGTGAGATTTGGGCAGTGGCGAAACTTTCATGTGTTTCTACAACTGTAAATAACGTGTTTGGGTTCATTGTTATTCTTACTTATTTTGGGCATGCGGTGTTGGTGTTTTGCTCGTACATCTACTTAATGAGAAAGTGCAGGAAATCAATAGAGGACAAGAACAAATTCATACAAACATGTGTGCCGCACATTCTCGCATTGATGAATGTGACAATTGCCATGTTGTTTGATGTACTGTTTACTCGCTATGGCACAAAGAATGTGCCACAAAGTCTGCGTAACTTCATGGCCATGGAATTCCTACTAGTACCACCCATTTTAAACCCTCTCATTTATGGGCTAAAAATGAAAACAGTACGCCAGGAAATTATTAACATGTTTTTCAGGAAAACAACAGAGAATATCTAAGTAAAAGTGAAAAGATCCTGTGCTTCGGGAAAAGATCCGGGAAAATAATTCTAATTGTGAACAAGTTAGCCACAAATGGCTGCATAATACAATGATTTTACCATGAATAAAGCATGTTGTTAGGCAGAAAAATTAAGCAACGTTTGATCAGCTTTCACTTAATAAGAATGTTTCTGGACGTTTTTGGATGGACTTTGTGCATTTAAGCTTAAGCATTCATGTTCATGTAAAATTGTATTTTGCTATAacatccttttattttattttcggctttattaatcctgggtcatcgcagcggaatgaaccgccaaattatccaacatatgttttatgcagcggatgccctcaatcacatacatacactacggacaatttagcttatccaattcacctgtaccacatgtatttggacttgtgaaggaaaccggagcacccagaggaaacccacacgaacaaggggagaacataaagagaaactttacacagaaacgttaactgacccagccgaggctctaaccttgctgtgaggcgtttgtaccacccactgtgccactgcgttgcccaaataagaacttttctgtcataaacgatagtaaaacaacttgtcaaaaataatacaatataatgaaACCCTgtgaacagattaaatacagaaAAGGAGAAAAGGGCGCTATTTtgttatcagctgtcagtcagcaccTGCTCTTTTGCCCAGGGTATCAATTTTTCACAGATATCAATTCATCTGAGCAGCTGCGGGATGTGATGGACTAAATGGTATGTTATGGTGGCTAAACCTTTAAATTAAAAGGACTTGAATCCTCCCATGTTATAGCTGCCACACCAAAGTCTGCTCAAATCATTTTTCTCAGCCTTAAGACCAATTGTCCTGGAGGTAATTTTCTGTCCAGCGTTGTCCTGGTAAAGGCCTTAGCTGAGCAAAGTTCTTGAGAAGTGTCAGCATTCAGGACAACCTTTGGTCTGCCGAGGCCACCTAAATTATGGACTGTTAAATATtgaattacaataaataataataaccagtgttgggcagtagcatcgcaacaagtagtgacgctactagtttaactacatttctcagtagcgtggcggtagcgtcactactttctcaatcaaatagcttttctgtAGCGAACCCTGCTGAAAGatcaagcttaaaccagcctaggggggttggctggttttagctgtttgaccagcctggttttagagggtttttcggccatttccaggctggtttccagccatttccagcctggtcattaggaaaatgaccagccaaatccacctaaaaccagcttgacatagctggacatagctggttttggctgggctacaaacctggctaggctggttaagctgggtttagctggtcatctcccagcctgaccagctaagaccaggctggaaaaggctggaaatgaccaaaaaaccctaaaaccagctaaccagcctaggctggtttaagctgtttttttttttagtagggaACCTATTACTTTaagcaagtagcgcagtagcatccacacaagctacatttacagattgtggatcaataagtgacggcaccgacattcatggagctgtgaggccggtgtatagccgatgaaagtaaatccatatgatggcatTAGGCTAAGGTTGGCATTAATCTTTTAATATTTAGCTTCACCGTCAcattaatgccagattgtgaaaaaaagtggcaaaacaaatcccacagagcctttatcttaatttcattaTACACGTcataatttactatttattttaattgaatttgttagtttaacggaggccagctagtgaagtgctgtgcaggtaaacctcacttctctgacctctaaagatgctTTAGCGACAGACACTGGAGGCCATGGTCTTCagtctccttgttagagcaactgactcccatgtggaaggtcaccagttcgataccagcttgcagcgggttgggtggcgtaggactggcggggttacattagGAAAGACTTAATTGGTGTgatggccaatttaaaggctaagtgtatgcACCTCTAAGTCTCTAGGCCTACTTAGAGACTTTGATGTTacaatgttacagaggacttatttctttgttttaacTTCCAAGTGGCCAATAgcctacgtttgttacgaataaattatgtttaaacacatataaacgactca

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0050896 response to stimulus biological_process
GO:0007608 sensory perception of smell biological_process
GO:0007165 signal transduction biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function
GO:0004984 olfactory receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070806-102 Predicted to enable odorant binding activity and olfactory receptor activity. Predicted to be involved in detection of chemical stimulus involved in sensory perception of smell. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane.

Ensembl:

ensembl_id ENSDARG00000105793

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00017717 True 3307 mRNA 0.40 1 5175593 5178899

Neighbor

gene id symbol gene type direction distance location
XLOC_008981 or126-5 coding downstream 3423 5167690 ~ 5172170 (-)
XLOC_008980 or126-7 coding downstream 10580 5162274 ~ 5165013 (-)
XLOC_008979 or128-10 coding downstream 18021 5155137 ~ 5157572 (-)
XLOC_008978 defbl3 coding downstream 159554 5011080 ~ 5016039 (-)
XLOC_008977 lipt2 coding downstream 206068 4957784 ~ 4969525 (-)
XLOC_008983 or126-3 coding upstream 3955 5182854 ~ 5184186 (-)
XLOC_008984 or126-2 coding upstream 10509 5189408 ~ 5191672 (-)
XLOC_008985 or128-9 coding upstream 17816 5196715 ~ 5198191 (-)
XLOC_008986 or128-8 coding upstream 23155 5202054 ~ 5203371 (-)
XLOC_008987 or128-7 coding upstream 26639 5205538 ~ 5207805 (-)
XLOC_008973 CU467614.1 non-coding downstream 810321 4365158 ~ 4365272 (-)
XLOC_008970 NA non-coding downstream 1000720 4163578 ~ 4174873 (-)
XLOC_008957 NA non-coding downstream 1414636 3754566 ~ 3760957 (-)
XLOC_008952 NA non-coding downstream 2013134 3160438 ~ 3162459 (-)
XLOC_008951 NA non-coding downstream 2059331 3115337 ~ 3116262 (-)
XLOC_008997 FO704791.1 non-coding upstream 204163 5383062 ~ 5383180 (-)
XLOC_009008 NA non-coding upstream 719511 5898410 ~ 5901982 (-)
XLOC_009014 NA non-coding upstream 1789482 6968381 ~ 6976921 (-)
XLOC_009015 CR396585.2 non-coding upstream 1829923 7008822 ~ 7008938 (-)
XLOC_009016 CR396585.1 non-coding upstream 1853198 7032097 ~ 7034722 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000409_00063863_00067440 NA coding CI01000409 null 63252 ~ 67506 (-)