XLOC_008985 (or128-9)


Basic Information

Item Value
gene id XLOC_008985
gene name or128-9
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 5196715 ~ 5198191 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00017720
ACTGTAATGTCCCTCAAATTTTCCATAACGCAGTGATGATGATTTAAATTATTGTATTCATAACGATTATAATGGCTGCCTTAAgacaatattaatatatacaataCGATCTAATGCTTATAAGATCATATTGAAACTATTGTTGAATTTTGTCTGCTCTCTTCCTCAGATCAAAGAAGTTATCAGTTGCTTGTGTGAAAATGGATAATGGAACATACTTTTACTTCATGCTGTTTGAAAATCTTGGGTATATAAGATATGCTTTGTTCACTACAGGACTGATCCTGTactgtgttattatattattcaatgcTGCCATTATTATTACCATATTCCAGGGCCCCTCATTACACCAGCCTATGTACATTCTGATTTCCTGCTTGTCTGTTAACTCTGTGTATGGAACAGCTGGGTTTTTTCCAAGAGTTCTGACAGACTTGCTGTCTGATACACACTTAATCTCCCGTGGAGCATGCATCTTACAATCTATTGTAATAAACTCATACATAACAAATGAGAATACAATCTTAATGCTAATGGCACTTGACAGATTTGTTGCAATTATTAAGCCTCTGCAATATCACAACATAATTACTCCAAGGTTCCTGgctcttttatttcttttaaactgGGCATATTCAATGCTTTGCATCAGtgttattgtcatttttactCTAGAACTGAAAATGTGTGGCAACAAACTATGGAAAGTGTACTGCCACAACTATGAAGTTGTCAAGCTCTCTTGTGTAAACagcattattgttaatattatggGCTTATATATGCTGATAACAACTGTAATCATTCCTTTAAGTTTAATTATATATTCTTATGTTAAAATTCTAATCATTTGTCAAAGAAGTTCATCACAGTTCATGAGAAAATCTTTTCAAACGTGTGTTCCACACATAGTGGTGCTTTTAAATTTCTCAGTTTCTGTCGTATCTGAGATTACTTTGAGTCGAGTTGTCAATCTAAACATGTCTGTAGGGTTGTCAGTTTTTCTATCACTGGAGTTTCTTTTAATACCACCCATCCTCAATCCACTTGTTTATGGGTTAAGTCTGTCAGACATTCGGAAGAAAAATATTTGCCTCAGAAATGGATGCAGGTAGATTATACAAGTTTTAGTTTGGctataaaagaaattaaatgcattaatactgtggttttatgaaaaaaaaacaagctttatAACACCATGCTTTTCATACTATATATGAATTTCAAGGTAGAACATTTAAATGTCTCAACAATGTAAAAGCTCTTTATCTCTATGTCATATTGAATTAATGTGTTAATAAGCATATTAAACTAATTTgccacatactgtatgctggaatGCTCCACAGTCTGAAATATTGATGCTTTTTAGTCTCTTTTCTTTATGTCTCCTTTggcacagtctacattgtaaaaagcactatagaaataaagatgaattgaataaatcagttacaataaaaacaaaatg

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0050896 response to stimulus biological_process
GO:0007608 sensory perception of smell biological_process
GO:0007165 signal transduction biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function
GO:0004984 olfactory receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070806-113 Predicted to enable odorant binding activity and olfactory receptor activity. Predicted to be involved in detection of chemical stimulus involved in sensory perception of smell. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane.

Ensembl:

ensembl_id ENSDARG00000105808

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00017720 True 1477 mRNA 0.32 1 5196715 5198191

Neighbor

gene id symbol gene type direction distance location
XLOC_008984 or126-2 coding downstream 5043 5189408 ~ 5191672 (-)
XLOC_008983 or126-3 coding downstream 12529 5182854 ~ 5184186 (-)
XLOC_008982 or126-4 coding downstream 17816 5175593 ~ 5178899 (-)
XLOC_008981 or126-5 coding downstream 24545 5167690 ~ 5172170 (-)
XLOC_008980 or126-7 coding downstream 31702 5162274 ~ 5165013 (-)
XLOC_008986 or128-8 coding upstream 3863 5202054 ~ 5203371 (-)
XLOC_008987 or128-7 coding upstream 7347 5205538 ~ 5207805 (-)
XLOC_008988 or128-6 coding upstream 12277 5210468 ~ 5212930 (-)
XLOC_008989 or128-5 coding upstream 17616 5215807 ~ 5217706 (-)
XLOC_008990 or128-4 coding upstream 22801 5220992 ~ 5222924 (-)
XLOC_008973 CU467614.1 non-coding downstream 831443 4365158 ~ 4365272 (-)
XLOC_008970 NA non-coding downstream 1021842 4163578 ~ 4174873 (-)
XLOC_008957 NA non-coding downstream 1435758 3754566 ~ 3760957 (-)
XLOC_008952 NA non-coding downstream 2034256 3160438 ~ 3162459 (-)
XLOC_008951 NA non-coding downstream 2080453 3115337 ~ 3116262 (-)
XLOC_008997 FO704791.1 non-coding upstream 184871 5383062 ~ 5383180 (-)
XLOC_009008 NA non-coding upstream 700219 5898410 ~ 5901982 (-)
XLOC_009014 NA non-coding upstream 1770190 6968381 ~ 6976921 (-)
XLOC_009015 CR396585.2 non-coding upstream 1810631 7008822 ~ 7008938 (-)
XLOC_009016 CR396585.1 non-coding upstream 1833906 7032097 ~ 7034722 (-)

Expression


Co-expression Network