XLOC_008987 (or128-7)


Basic Information

Item Value
gene id XLOC_008987
gene name or128-7
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 5205538 ~ 5207805 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00017722
ACAGAAGAACTACTGTAATGTCTCTTAAATTCTTTGAAAATGCAGTGATTATCACTTAAATTACTGTattcataatgataataatggcTTTCTTAAgacaatattaatatatacaatataaactAAAGCTTAAAAGATCATATTTAAACTAAAGTATTGATTTATAAGGTGTTGAACTTTCTCTGCTCTCTTCCTCAGATCATTTGCTTGTGTGAAAATGGATAATGGAACATACTTTTACTTCATGTTGTTTGAAAATCTTGGGTATATAAGATATGCTTTGTTCACTTCAGGATTGATTCTGTACTGTGTTATCATACTATTCAATgctgtcattattattactatattttggAACCGCACTTTACACCAGCCTATGTACATTCTGATTTCCTGCTTGTCTGTTAACTCTGTGTATGGAACAGCTGGCTTTTTTCCAAGAGTTCTGACTGACTTGTTGTCTGATGCACACTCAATCTCTCGTGAAGCATGCGTCTTACAATCTATTGTAATTAACTCATACATAGCAAATGAGAATACAATCTTAATGCTAATGGCTCTTGACAGATTTGTTGCAATTAGTAAGCCTCTGCAATATCACAACATAATTACTCCAAGGTTCCTGgctcttttatttcttttaaactgGGCATATTCAATGTTTTGTTTCTGTGTTGTTGCAATTTTTTCTTCAGGGCTGAAAATGTGTGGCAACAAACTATGGAAAGTGTACTGCCACAACTATGAAGTTGTCAAGCTGTCTTGtgtaaacaacattattattaatataatgggCTTGTATGTGCTGGCAACAACTGTAATCATTCCTTTAAGTTTAATTATATATTCTTATGTGAAAATTCTAATCATTTGTCGAAGAAGTTCATCACAGTTCATGAGAAAATCTTTTCAAACGTGTGTTCCACACATAGTGGTGCTTTTAAATTTCTCAGTTTCTGTCGTATCTGAGATTACTTTGAGTCGAGTTGTCAATCTAAACATGTCTGTAGGGTTGTCAGTTTTTCTGTCACTGGAGTTTCTTTTAATACCACCCATCCTCAATCCACTTGTTTATGGGTTAAGTCTGTCAGATATTCGGAAGAAAAATATTTGCCTCAGAAATGTATGCAGGTAGATTATACAAGTTTTAGTTTGGCtgtaaaattaaatgcatttatactCTGGTTTTAGGTAAAAAACAAGCTTTATAACACCATGCTTTTCATACTATTTATGAATTTCAAGTTCGAACATTTTAATGTGTCAGAAATGTAAATGCTCTTTATCTTTATGTCACATTGAATTAATGTGTTAATAAGCATATTAAACTAATTTGCCACATACTGTTTGCTGGAATGCTCCACAGTCTGAAATATTGTTACAGCTTTTTAGTCTCTTGTCTTTGTCTATGTCTGCTTTGGCACAGTCtttattgtaaaaagcactatagaaataaagatgaattgaataaatcagttacaataaaaacataatgtgTTCTCTATTTACCAAACTCAAACCTACATTCAGTGTAGCCTATGTTGAGAATTAGAGATCATAATTATGCTTTAAATAGCTTTCTAAATAGTATTATAGCCTATATAATTTGCTCACCAAATATCGACACAGACTAAGCAACAAAAATATTACTTTCTTAGCTCAAATGTAGTTTTTCCCTCTAACATTTGCTCTGGCTGACACGTGACTCTACTTTTTCATATGTGGAATAAGGAATAAAATGAGTATATGTGAAAAGAATCAATTGATTTGTAACTATCCCTTAGTCTAGCACTTTCTGTTAGGATCctctttgtgttaaaaaaaaaatccttgttcAAGGGGAAACTGAAACTTTATCTTTAAAAGGCCTATAATACCAGAGTTGTCTGAGCATGCTTTTTATCTGTATGTTTAGAATGTCCTTTTCTTCGTTttatttttctcagtggcttgcactatcaccttacagcaagaaggttactagtATGAGTCCCAGcaggaggcatttctgtgtggagttaccCCTGGATTTTCTGGTTTACCCCTAAAGCCTGGTTTTTAcatctgcgtcgagtgatcggcgtgacctaCAGTGCAAGCCTTGCTcgttgccgtgcatttatacttctacatGCTGTATGTGTTCCTCTGTAATACCACTTCTGAAACGCTatctggcagtgaggtgtttcttcgctggtgttttctttttttcctgaatgcttccttaatgtacactCATAActtattaaaagaataagcacaata

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0050896 response to stimulus biological_process
GO:0007608 sensory perception of smell biological_process
GO:0007165 signal transduction biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function
GO:0004984 olfactory receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070806-111 Predicted to enable odorant binding activity and olfactory receptor activity. Predicted to be involved in detection of chemical stimulus involved in sensory perception of smell. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane.

Ensembl:

ensembl_id ENSDARG00000095222

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00017722 True 2268 mRNA 0.34 1 5205538 5207805

Neighbor

gene id symbol gene type direction distance location
XLOC_008986 or128-8 coding downstream 2167 5202054 ~ 5203371 (-)
XLOC_008985 or128-9 coding downstream 7347 5196715 ~ 5198191 (-)
XLOC_008984 or126-2 coding downstream 13866 5189408 ~ 5191672 (-)
XLOC_008983 or126-3 coding downstream 21352 5182854 ~ 5184186 (-)
XLOC_008982 or126-4 coding downstream 26639 5175593 ~ 5178899 (-)
XLOC_008988 or128-6 coding upstream 2663 5210468 ~ 5212930 (-)
XLOC_008989 or128-5 coding upstream 8002 5215807 ~ 5217706 (-)
XLOC_008990 or128-4 coding upstream 13187 5220992 ~ 5222924 (-)
XLOC_008991 or128-3 coding upstream 20775 5228580 ~ 5230423 (-)
XLOC_008992 or128-2 coding upstream 29791 5237596 ~ 5239536 (-)
XLOC_008973 CU467614.1 non-coding downstream 840266 4365158 ~ 4365272 (-)
XLOC_008970 NA non-coding downstream 1030665 4163578 ~ 4174873 (-)
XLOC_008957 NA non-coding downstream 1444581 3754566 ~ 3760957 (-)
XLOC_008952 NA non-coding downstream 2043079 3160438 ~ 3162459 (-)
XLOC_008951 NA non-coding downstream 2089276 3115337 ~ 3116262 (-)
XLOC_008997 FO704791.1 non-coding upstream 175257 5383062 ~ 5383180 (-)
XLOC_009008 NA non-coding upstream 690605 5898410 ~ 5901982 (-)
XLOC_009014 NA non-coding upstream 1760576 6968381 ~ 6976921 (-)
XLOC_009015 CR396585.2 non-coding upstream 1801017 7008822 ~ 7008938 (-)
XLOC_009016 CR396585.1 non-coding upstream 1824292 7032097 ~ 7034722 (-)

Expression


Co-expression Network