XLOC_008996 (or120-1)


Basic Information

Item Value
gene id XLOC_008996
gene name or120-1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 5307128 ~ 5309213 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00017734
CATATGACAAGATAGTCTGGAATTAGCAGGTAAATAGATGTTCTAAGAGTAAAATGCATGAATCAATACACTGTGCGCTGCACATTTGTGAAATAACTTTCTCTCCAACAGGAAAATGAGTCTTTCTAGCCTGAACATTACTCTGTTTTTTACCGGTTATGGACCTCCTAGTGCACTCAATTATGGTGTTTTTGTAATCTCTCTTGTAGTCTATTTTACAACTGTTGTTGCAAATGTAACATTGATGCTGGTGATCTGCTTGGACGCATCTCTTCATAAGcccatgtatgtatttttatttaacctgGCTATTAATGGGCTAATCGGATCCTCTGCTGTACTTCCTAAAATAATGGACAATCTTGTGGATGATATAAAAGATATGCTGTATACCGATTGTATTATACAAGTGTTTTGTATCAACGTTTATGGAACATGTGCTTATGCACTATTGACACTAATGGCATATGATAGGTATGTTTCAATTTGTAAGCCTTTGCAATATCATAATATTATGACTCCGGGTAAAATTAGACTTCTGCTTTTTATAGCATACTTTGTTCCTATCTGCTCTCTGGGCATACAGGTGTATCTTACATCAAGATTGCCTGTGTGCAGGTATACAATAAACAAGTTGTTTTGTGACAATCTAGCCGTAGTTAATCTCTCCTGTGCCAAAAATCCCTGGGCAGACCTTTATGGCATATGTTTGGTAATTCTTTTTGTCGTTCTACCTCTAATCTTTGTCGTTTTTTCATATGTGCAGATATTGTTTGTCTCTTTGAAAGCCTCAGTAAGTGCCCAGAGGAAGGCTTTAAAAACATGCACGCCACACTTGATTACTTTTATCAATTTTTCACTGGCTTCTCTTTTTTCTGTGATATACAATCGATTTAATTTCAGTCTTTCCAAAGAAGTGAATGTGTTCATGTCAGTTCATTTCATACTCATCCCTCCACTTTTACATCCACTTATATATGGAATTAGAACAAAAGAGATAAACAATAGCATTGCAAAAATATTTAGAAGACAAATATTTGCTCTTGGTTTTAATTTGAAGACCGAACAAAGGTGTAATGAAGCACTGTTTATTACTTCAAAATAAATGCCTACGACCGTGTAAAAGCATTGGGAtggcttatttatttatgagGACTTTCtatttattgtacattatatGTATGCATGCAAAAAAGTTACATACAAAGTATGTGTATCTGATGTTCAAATAAACTTTAGTCTGTGAAAATAATGGCCATTACTTGAAACAAAGCATTAGTTTTCTTATTCTCCACTACAATGTCTTAGCAGAGATACACATATTTTGGGGTAAAATGATTGTTTGTGAGCACAAAATTCAATGATCTAAAATGACTTGTTCATATGTATGTGCTTACCTTGACAATTTACtccttaatgttttattaaaccataagaaagATATTACAACCTTGATTTAAAGACATTTGTTCATGTAATTTGCAATTTATTATGCATTTAGTGATTTGGTAAATTATGGAATCAGTTAAAAGCACAAATGCTGTTTGGAGAAGGTGAAGATTAaaacgttttattattattattattattattattattaaaatactttttgcTCAGTTGTATTGGTCTTAAGGATTCTGACAGCAGGAGTAAGTGCAACTGTTATAATCATGTAACAAATGAATGATAACTATTATACAGCAATTATACTTTGGTAAATCGTCACATTTGAGGACTTTTAATGGTGCATCATGTTTGAAGGATGTATGGATCATGCTAATTTCATTGCCCAATGACAGTCAGTTAAcaagagcaaaaaaaaagttataccAAGGTATTCTATTTATCAAGAAGCTTGTTTGCTGTAATACGCATTGTTATTGTTTGTCTGATTGTGCTTTAGACAATATGTGTCAACAGTATTTTGAatgacaaagtttttttttttttttttttttttttaaagggatatatTGTTGTTCACGAGTCCCTTGTTTGTCCCGAACAGTTGAATTGTTTCCTCTAcaacaggggtggccaatcctgttcctggagagccaccttcctgcagatttcaattgctacc

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0050896 response to stimulus biological_process
GO:0007608 sensory perception of smell biological_process
GO:0007165 signal transduction biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function
GO:0004984 olfactory receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070806-15 Predicted to enable G protein-coupled receptor activity and olfactory receptor activity. Predicted to act upstream of or within G protein-coupled receptor signaling pathway and sensory perception of smell. Predicted to be located in plasma membrane. Predicted to be integral component of membrane.

Ensembl:

ensembl_id ENSDARG00000100663

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00017734 True 2086 mRNA 0.33 1 5307128 5309213

Neighbor

gene id symbol gene type direction distance location
XLOC_008995 or127-1 coding downstream 44186 5261649 ~ 5262942 (-)
XLOC_008994 or126-1 coding downstream 54455 5250954 ~ 5252673 (-)
XLOC_008993 or128-1 coding downstream 61376 5242840 ~ 5245752 (-)
XLOC_008992 or128-2 coding downstream 67592 5237596 ~ 5239536 (-)
XLOC_008991 or128-3 coding downstream 76705 5228580 ~ 5230423 (-)
XLOC_008997 FO704791.1 coding upstream 73849 5383062 ~ 5383180 (-)
XLOC_008998 arrb1 coding upstream 81521 5390734 ~ 5467477 (-)
XLOC_008999 atg16l2 coding upstream 185790 5495003 ~ 5524271 (-)
XLOC_009000 atg16l2 coding upstream 232855 5542068 ~ 5563551 (-)
XLOC_009001 wdr62 coding upstream 256428 5565641 ~ 5624456 (-)
XLOC_008973 CU467614.1 non-coding downstream 941856 4365158 ~ 4365272 (-)
XLOC_008970 NA non-coding downstream 1132255 4163578 ~ 4174873 (-)
XLOC_008957 NA non-coding downstream 1546171 3754566 ~ 3760957 (-)
XLOC_008952 NA non-coding downstream 2144669 3160438 ~ 3162459 (-)
XLOC_008951 NA non-coding downstream 2190866 3115337 ~ 3116262 (-)
XLOC_009008 NA non-coding upstream 589197 5898410 ~ 5901982 (-)
XLOC_009014 NA non-coding upstream 1659168 6968381 ~ 6976921 (-)
XLOC_009015 CR396585.2 non-coding upstream 1699609 7008822 ~ 7008938 (-)
XLOC_009016 CR396585.1 non-coding upstream 1722884 7032097 ~ 7034722 (-)

Expression


Co-expression Network