XLOC_008998 (arrb1)


Basic Information

Item Value
gene id XLOC_008998
gene name arrb1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 5390734 ~ 5467477 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00017736
AAAAGCTTCAGGATTTTCCAAACAGCGTTTGTTTTTCCAACATTCCCACATGAAGGACTCTTAAAGCAGAAGGAATCATCAGCTCTCGCGTGTTGTCTTTCTCTCAGTAGCAGTGGCGGGGTTTGTCTGTTGGCAGGCGGCAGTGGAGATGCTCCTGTAATTGGATTCATCTGGAAAGCGCTCAAACCGCAAGGAGAGCCGCTTAAGTGACAGCGGCTTTCTAACGCAGCATAGTAAATTCCCTTTCTTCCAGTCCTTCTCATCATCCTTCTGCTTTGCCTCTTGCTTCTTCTTTTTCTACTCGGCAACCCTTCCCTCCAGCAGAAGAGTTTTGCGTGAACCGTGTCGCACTCATATCCTCGCGATGGGAGATAAAGGCACAAGGGTGTTCAAGAAGGCAAGTCCCAATGGAAAGTTAACTGTGTACCTTGGTAAGAGGGATTTCGTTGACCACGTGGACCTTGTGGAGCCTGTCGATGGTGTGGTTTTAATTGACCCAGAGTACTTAAAAGAGAGGAAAGtttttgtgACACTGACATGTGCCTTCCGCTATGGACGGGAGGACTTGGATGTTCTTGGCTTGACGTTTCGCAAAGATCTCTTCGTGGCAAACATCCAGGCATTTCCTCCTGTCCCTGAAGAGAAAAAGAGCCTGACACGTCTACAAGAGCGACTGATAAAGAAACTCGGAGAGCATGCCTACCCCTTCACCTTTGAGATTCCTCCAAACTTACCCTGTTCTGTCACATTACAACCAGGGCCAGAAGATACAGGAAAGGCCTGCGGGGTTGACTTTGAAGTCAAAGCTTTCTGTGCAGAGAATGTTGAAGAAAAAATCCACAAAAGGAATTCAGTGCGTCTTGTCATCAGAAAAGTGCAGTACGCTCCGGAGAAGCCGGGCCCGCAGCCAATGGCTGAAACCACAAGGCAGTTTCTCATGTCAGACAAACCTTTACACCTGGAGGCCTCGCTTGACAAAGAGATTTACTATCATGGTGAACCAATCAGCGTCAACGTCCATGttacaaacaacacaaacaagACAGTAAAGAAAATAAAGATTTCAGTGCGTCAGTATGCTGATATCTGCCTCTTCAACACTGCCCAGTACAAGTGTCCAGTGGCGATAGAGGAATCAGATGATATCGTAGCCCCCAGTGCTACATTTTGTAAAGTTTACACCCTCACCCCTTTCCTTGCGAATAACCGAGAGAAGCGTGGCTTGGCTCTGGACGGCAAACTCAAGCACGAAGACACCAATTTAGCCTCGAGTACACTGTTGCGAGAGGGAGCCAACAAGGAGATTCTGGGCATTATTGTATCTTATAAGGTGAAAGTTAAGCTGGTGGTGTCTCGCGGAGGgctGCTGGGAGATCTTGCGTCAAGTGATGTTGCCGTCGAGCTCCCCTTTACATTAATGCATCCTAAACCATTGGAGGAATCGATCTACAGAGATGCCCCAGAAAATGATGCGCCCATTGACACAAACCTCATTGAGTTTGACACAAATGACGATGACATCATCTTCGAGGACTTTGCTCGGCAACGGCTGATCGGGGCAAAAGACGATAAGGATGAAGACGAGGAGGGCGCAGATTCGCCCAAATTGAACGACAGATAG

Function

symbol description
arrb1 Predicted to enable G protein-coupled receptor binding activity. Acts upstream of or within several processes, including endothelial to hematopoietic transition; regulation of microglial cell activation; and regulation of signal transduction. Predicted to be active in several cellular components, including cytoplasmic vesicle; cytosol; and nucleus. Is expressed in neural rod. Orthologous to human ARRB1 (arrestin beta 1).

GO:

id name namespace
GO:0045746 negative regulation of Notch signaling pathway biological_process
GO:0002031 G protein-coupled receptor internalization biological_process
GO:1903978 regulation of microglial cell activation biological_process
GO:0070374 positive regulation of ERK1 and ERK2 cascade biological_process
GO:0035162 embryonic hemopoiesis biological_process
GO:0048368 lateral mesoderm development biological_process
GO:0001919 regulation of receptor recycling biological_process
GO:1900136 regulation of chemokine activity biological_process
GO:0098508 endothelial to hematopoietic transition biological_process
GO:0007165 signal transduction biological_process
GO:0005829 cytosol cellular_component
GO:0005886 plasma membrane cellular_component
GO:0005634 nucleus cellular_component
GO:0031410 cytoplasmic vesicle cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005515 protein binding molecular_function
GO:0001664 G protein-coupled receptor binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060824-1 Predicted to enable G protein-coupled receptor binding activity. Acts upstream of or within several processes, including endothelial to hematopoietic transition; regulation of microglial cell activation; and regulation of signal transduction. Predicted to be active in several cellular components, including cytoplasmic vesicle; cytosol; and nucleus. Is expressed in neural rod. Orthologous to human ARRB1 (arrestin beta 1).

Ensembl:

ensembl_id ENSDARG00000043241

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00017736 True 1621 mRNA 0.48 16 5390734 5467477

Neighbor

gene id symbol gene type direction distance location
XLOC_008997 FO704791.1 coding downstream 7554 5383062 ~ 5383180 (-)
XLOC_008996 or120-1 coding downstream 81521 5307128 ~ 5309213 (-)
XLOC_008995 or127-1 coding downstream 127792 5261649 ~ 5262942 (-)
XLOC_008994 or126-1 coding downstream 138061 5250954 ~ 5252673 (-)
XLOC_008993 or128-1 coding downstream 144982 5242840 ~ 5245752 (-)
XLOC_008999 atg16l2 coding upstream 27526 5495003 ~ 5524271 (-)
XLOC_009000 atg16l2 coding upstream 74591 5542068 ~ 5563551 (-)
XLOC_009001 wdr62 coding upstream 98164 5565641 ~ 5624456 (-)
XLOC_009002 urb1 coding upstream 160400 5627877 ~ 5720666 (-)
XLOC_009003 phkg1a coding upstream 255048 5722525 ~ 5742531 (-)
XLOC_008973 CU467614.1 non-coding downstream 1025462 4365158 ~ 4365272 (-)
XLOC_008970 NA non-coding downstream 1215861 4163578 ~ 4174873 (-)
XLOC_008957 NA non-coding downstream 1629777 3754566 ~ 3760957 (-)
XLOC_008952 NA non-coding downstream 2228275 3160438 ~ 3162459 (-)
XLOC_009008 NA non-coding upstream 430933 5898410 ~ 5901982 (-)
XLOC_009014 NA non-coding upstream 1500904 6968381 ~ 6976921 (-)
XLOC_009015 CR396585.2 non-coding upstream 1541345 7008822 ~ 7008938 (-)
XLOC_009016 CR396585.1 non-coding upstream 1564620 7032097 ~ 7034722 (-)
XLOC_009017 NA non-coding upstream 1596991 7064468 ~ 7065313 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000092_02522204_02531634 ARRB1 coding CI01000092 null 2522123 ~ 2531634 (-)