XLOC_009000 (atg16l2)


Basic Information

Item Value
gene id XLOC_009000
gene name atg16l2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 5542068 ~ 5563551 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00017738
CGCTTTCCACAATGGAAAACAGACACACGGGTTCAGGATGACGGCCATGAACTATGACTAGGAAACTGTACCGTTGTTACTGcgctttttattattgtttatgatcATGGCGGCGGCGATAAACTCTGAACCTAAACGCCAGAACGAAACATGGAAGCGTCACATTATCAGACAGCTGAAAAACCGCAACAGGACACAGACGAGCCTCTTCCAGGACATTATACAGTCATATCACAGTCTGCTGGAGAAGTCCAAGCAAAGAGCCCTCATAACCAAAGGCATTCTGGGATCAGGGTCAAGGACCTCACCAGTTCCCTCATCGGAAGATTCGCTGGCCTCCCTAAAGACCACCACCGGTGAGCTTGCATACCAAGTGGTGGAACTGCAGCAGAGAGTCCAGATGAAGGAAGTGACGCTGGATGAACAGCATAACAAGTTGTTTGAGGTTCAAAACCATCTTAGTATTATGACATTAGAACACAGCGAGCTTCAGGAACGCGTGACGGAGGTGCAGACTGGAAACCGACTCCTCAAACAAAAATATGACTCTCTCCTGGAGCAGCACCAGAATATGGAGAAAACATACCGGCAGGAGAAACTCCACAGCGCAGACATCCTGGAGAACATGATCCGACCAAAGCAGCAGGCTGCTGCCCGCATGAACCACCGCAATGAGAAGAGAGTGAGAGCCAGAGAGGCCAGCATTCACAAAGAGCTTCAGGAGGCTGCCAATAAGAATGTCAATATTAATGAAGAGTCTGGAAATGTTTCACCTCCCAACCCGTCATCTCCTCAATGTGAAACTGCAGAGAGGTTGGAAAGATCCCACGGGCCGCTGTTCAGGTCTGCTTCAGCTACGTCTCCCCGCATCATCAGCTCCATCAGGGGTCTTTTTGAGAGGAAGATTCGAGGTAAATCAGTTTGCCGGTCAGAAGAGGATCTCTATATACCATTAGGAGTCTGTCTGGCTGCCAGAGTTCCAACCAAAGCGATTTCTTCACTGGTGC

Function

symbol description
atg16l2 Predicted to be involved in autophagosome assembly and negative stranded viral RNA replication. Predicted to be active in autophagosome membrane. Orthologous to human ATG16L2 (autophagy related 16 like 2).

GO:

id name namespace
GO:0000045 autophagosome assembly biological_process
GO:0039689 negative stranded viral RNA replication biological_process
GO:0000421 autophagosome membrane cellular_component

KEGG:

id description
ko04140 Autophagy - animal
ko04131 Membrane trafficking
ko03029 Mitochondrial biogenesis

ZFIN:

id description
ZDB-GENE-060503-197 Predicted to be involved in autophagosome assembly and negative stranded viral RNA replication. Predicted to be active in autophagosome membrane. Orthologous to human ATG16L2 (autophagy related 16 like 2).

Ensembl:

ensembl_id ENSDARG00000043238

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00017738 True 1007 mRNA 0.49 9 5542068 5563551

Neighbor

gene id symbol gene type direction distance location
XLOC_008999 atg16l2 coding downstream 17797 5495003 ~ 5524271 (-)
XLOC_008998 arrb1 coding downstream 74591 5390734 ~ 5467477 (-)
XLOC_008997 FO704791.1 coding downstream 158888 5383062 ~ 5383180 (-)
XLOC_008996 or120-1 coding downstream 232855 5307128 ~ 5309213 (-)
XLOC_008995 or127-1 coding downstream 279126 5261649 ~ 5262942 (-)
XLOC_009001 wdr62 coding upstream 2090 5565641 ~ 5624456 (-)
XLOC_009002 urb1 coding upstream 64326 5627877 ~ 5720666 (-)
XLOC_009003 phkg1a coding upstream 158974 5722525 ~ 5742531 (-)
XLOC_009004 chchd2 coding upstream 209568 5773119 ~ 5780648 (-)
XLOC_009005 hnrnpl2 coding upstream 220661 5784212 ~ 5799183 (-)
XLOC_008973 CU467614.1 non-coding downstream 1176796 4365158 ~ 4365272 (-)
XLOC_008970 NA non-coding downstream 1367195 4163578 ~ 4174873 (-)
XLOC_008957 NA non-coding downstream 1781111 3754566 ~ 3760957 (-)
XLOC_008952 NA non-coding downstream 2379609 3160438 ~ 3162459 (-)
XLOC_009008 NA non-coding upstream 334859 5898410 ~ 5901982 (-)
XLOC_009014 NA non-coding upstream 1404830 6968381 ~ 6976921 (-)
XLOC_009015 CR396585.2 non-coding upstream 1445271 7008822 ~ 7008938 (-)
XLOC_009016 CR396585.1 non-coding upstream 1468546 7032097 ~ 7034722 (-)
XLOC_009017 NA non-coding upstream 1500917 7064468 ~ 7065313 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000092_02602158_02608405 NA coding CI01000092 null 2601686 ~ 2608405 (-)