XLOC_009003 (phkg1a)


Basic Information

Item Value
gene id XLOC_009003
gene name phkg1a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 5722525 ~ 5742531 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00017745
ATTCACAGTTGCCCTTTCGGCGCTGTGTTGTCGAAGGCTGCAGACCCGTCATATCTGAGACTGTTTATTAATACAGGAAGACTGGGACATGGACTGACAGCTCGAAGGAGAGCGCAGCTGTTGAATCGAGGGGGAAACGCGGACTGTAACAGGAGAGTCTATAATAATGACCAAAGAAGATGAAATTCCAGACTGGGCCGGAGCTCAAGACTTTTATCAGAAATATGATCCTAAAGAGATCCTTGGAAGgggTGTAAGCAGTGTGGTTCGACGCTGCATTCATAAGCGCACCACTCAGGAATATGCCGTAAAAGTCATAGACATTACGCCATCAGATAAGATGAACACTGAGGAGATCGAGGAGATCAGGAACGCCACAATTAAGGAGATCGACATCCTGAAGAAAGTCTGTGGCCAAGAAAACATCATTCAGCTGAAGGATTGCTTCGAAACTAAAGCTTTTTTCTTCTTGGTGTTTGACTTGATGAAGAAAGGAGAgctttttgattacctgactgAGAAGGTTACGCTCAGTGAAAAAGAGACAAGGAAGATCATGCGCTCCCTGTTGGAAGTGGTTCAGTTCCTTCACTCCCAGAATATTGTACACAGGGATCTGAAGCCGGAGAACATCCTTCTGGATGACAATATGAACATCAAACTCACCGATTTCGGCTTTGCTGTGCAGATTGCACCAGGACAAAAACTCAACGAGGTGTGTGGAACGCCAGGATATTTGGCTCCAGAGATTATCGAATGCTCAATGGATCCTCATCACCAGGGCTATGGAGCTGCTGTTGATCTCTGGAGTGCAGGGGTGATCATGTTCACCCTTCTTGCAGGTTCTCCTCCATTCTGGCACAGGAAGCAGATGCTGATGCTGCGTATGATCCTGGCAGGAAATTACCAGTTCACCTCTCCGGAGTGGGATGACCGGTCAGACACCGTCAAAGACCTGATCTCCAAGATGTTGGTGGTAAATCCAGAGAAACGTTTCACTGCCACGGACGCCCTAAACCACCCTTTCTTTCAGCAGTATGTAGTCGCAGAGGTGCGACATTTCAGCCCATACAGGAAGTTCAAGGTCATCTGCATGACAGTTCTGGCAACAATGCGCATTTACTGCAATTATCGAAGAGCCAAACCAGTTACTAAAGAAGTGATCAAGAGCGACCCCTATGCAGTAAAGCCTATTCGCAAACTCATCGACGCCTGTGCGTTCAAGATTTATGGCCACTGGGTGAAGAAGGGCCAGACGCAGAACAGAGCGGCCCTGTTTGAGAACAGTCCGAAAGCTATCCTGCTTTCTCTCGCTGCCGAATCAGTGGATTCATCTCTCAGAATGATGTAAGGCGTGTTGAAAAGACATCAGTGCTTTATACTGTATAACATCGTGAGTTGTTTCGATAACTTCCCAGTGCCCACGCATGAATGAGTACACCTCCTTTGAAAAGTAATGTTTTTATCCATTTACCAGTGAAACTGGACACTATTCATCGGTGCATTTTAACATTTAGAGTTGTTAAAAAAAGAGTGGGGTCACATTACATCTTTAAGATGAGGaaaaataatggatttattttactaAAACTTACTAAAATTTActaaaactaaatacatttacatttagtcatttagcagacgcttttctccaaagcgacttacaaatgaggacaaggaagcaatttacacaactataagagcaacaatgaataagtgctataggcaagtttcaggtctgtaaagtctaagatggaaagtattagtagtattagtttttttttttttttttgggtacagttagtgtgatattcagagaggcaattgcagattaggaagtgaagtggagactaaatagttgagtttttagtcgtttcttgaaaatagcgagtgactctgctgttctgatgcagttagggagttcattccaacagctgggcagattgagcgtgagcgttcgcgatagtgatttcttccctctttgggatggaaccacgaggtgacgttcattcacagaacgcaagtttctggaggacacataaatctgcagcagtgagagcagataagaaggagcaaggccagaagtcactttgtaggcaaacatcagagctttgaatttgatgcgagcagcaactggcagccagtgcaaacggactagcagcggagtgacatgtgctcgtttaggttcattgaagaccactcgtgctgctgcgttctggagcagttgaagaggcttaatagagttagctggaagcccagctagtagagagttgcagtaatccagtttggagagaacaagagcttgaacaaggagttgagcacCTGTACCTAATTTTTCTAgttaacttaatatttattttatattttctccaAATATTAATTGTCATGTACCAATGTTTTGCACCAggatcttacttttttttttgttggattaCGTCCAGTTttgtcttcagtactgactaaacaaTCCAATAAACCCGATTTTCCACAAGTGTCAAATTGTACATCATCCCATCAGTTTAAAAGTGAGAAATGTACTCATTTACTCTAGgcactataaataattaatttcattcatcctTTTTCCCACAAGGATTTTAACAATTGGCTTAAATGTTGTTATTGAAAGCTTTTGTGAAACTGAAAGCTTTGTCTATTGAACCTATATATCTGAAGTTCTCCTGCTAGTGTTGATCATTTTTTCTGTTTGataaattatttgaaataataaaacaaaaatttaaaa
>TCONS_00017746
cttaaaGGAGAGTCTATAATAATGACCAAAGAAGATGAAATTCCAGACTGGGCCGGAGCTCAAGACTTTTATCAGAAATATGATCCTAAAGAGATCCTTGGAAGgggTGTAAGCAGTGTGGTTCGACGCTGCATTCATAAGCGCACCACTCAGGAATATGCCGTAAAAGTCATAGACATTACGCCATCAGATAAGATGAACACTGAGGAGATCGAGGAGATCAGGAACGCCACAATTAAGGAGATCGACATCCTGAAGAAAGTCTGTGGCCAAGAAAACATCATTCAGCTGAAGGATTGCTTCGAAACTAAAGCTTTTTTCTTCTTGGTGTTTGACTTGATGAAGAAAGGAGAgctttttgattacctgactgAGAAGGTTACGCTCAGTGAAAAAGAGACAAGGAAGATCATGCGCTCCCTGTTGGAAGTGGTTCAGTTCCTTCACTCCCAGAATATTGTACACAGGGATCTGAAGCCGGAGAACATCCTTCTGGATGACAATATGAACATCAAACTCACCGATTTCGGCTTTGCTGTGCAGATTGCACCAGGACAAAAACTCAACGAGGTGTGTGGAACGCCAGGATATTTGGCTCCAGAGATTATCGAATGCTCAATGGATCCTCATCACCAGGGCTATGGAGCTGCTGTTGATCTCTGGAGTGCAGGGGTGATCATGTTCACCCTTCTTGCAGGTTCTCCTCCATTCTGGCACAGGAAGCAGATGCTGATGCTGCGTATGATCCTGGCAGGAAATTACCAGTTCACCTCTCCGGAGTGGGATGACCGGTCAGACACCGTCAAAGACCTGATCTCCAAGATGTTGGTGGTAAATCCAGAGAAACGTTTCACTGCCACGGACGCCCTAAACCACCCTTTCTTTCAGCAGTATGTAGTCGCAGAGGTGCGACATTTCAGCCCATACAGGAAGTTCAAGGTCATCTGCATGACAGTTCTGGCAACAATGCGCATTTACTGCAATTATCGAAGAGCCAAACCAGTTACTAAAGAAGTGATCAAGAGCGACCCCTATGCAGTAAAGCCTATTCGCAAACTCATCGACGCCTGTGCGTTCAAGATTTATGGCCACTGGGTGAAGAAGGGCCAGACGCAGAACAGAGCGGCCCTGTTTGAGAACAGTCCGAAAGCTATCCTGCTTTCTCTCGCTGCCGAATCAGTGGATTCATCTCTCAGAATGATGTAAGGCGTGT

Function

symbol description
phkg1a Predicted to enable ATP binding activity; calmodulin binding activity; and phosphorylase kinase activity. Acts upstream of or within angiogenesis. Predicted to be part of phosphorylase kinase complex. Orthologous to human PHKG1 (phosphorylase kinase catalytic subunit gamma 1).

GO:

id name namespace
GO:0001525 angiogenesis biological_process
GO:0006468 protein phosphorylation biological_process
GO:0005978 glycogen biosynthetic process biological_process
GO:0016310 phosphorylation biological_process
GO:0005964 phosphorylase kinase complex cellular_component
GO:0016740 transferase activity molecular_function
GO:0005516 calmodulin binding molecular_function
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function
GO:0004689 phosphorylase kinase activity molecular_function
GO:0016301 kinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-061103-385 Predicted to enable ATP binding activity; calmodulin binding activity; and phosphorylase kinase activity. Acts upstream of or within angiogenesis. Predicted to be part of phosphorylase kinase complex. Orthologous to human PHKG1 (phosphorylase kinase catalytic subunit gamma 1).

Ensembl:

ensembl_id ENSDARG00000030604

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00017745 False 2746 mRNA 0.42 10 5722525 5742531
TCONS_00017746 True 1213 mRNA 0.47 9 5723913 5740358

Neighbor

gene id symbol gene type direction distance location
XLOC_009002 urb1 coding downstream 1859 5627877 ~ 5720666 (-)
XLOC_009001 wdr62 coding downstream 98069 5565641 ~ 5624456 (-)
XLOC_009000 atg16l2 coding downstream 158974 5542068 ~ 5563551 (-)
XLOC_008999 atg16l2 coding downstream 198254 5495003 ~ 5524271 (-)
XLOC_008998 arrb1 coding downstream 255048 5390734 ~ 5467477 (-)
XLOC_009004 chchd2 coding upstream 30588 5773119 ~ 5780648 (-)
XLOC_009005 hnrnpl2 coding upstream 41681 5784212 ~ 5799183 (-)
XLOC_009006 rbp2a coding upstream 60927 5803458 ~ 5815006 (-)
XLOC_009007 brwd1 coding upstream 86463 5828994 ~ 5895124 (-)
XLOC_009008 NA coding upstream 155879 5898410 ~ 5901982 (-)
XLOC_008997 FO704791.1 non-coding downstream 339345 5383062 ~ 5383180 (-)
XLOC_008973 CU467614.1 non-coding downstream 1357253 4365158 ~ 4365272 (-)
XLOC_008970 NA non-coding downstream 1547652 4163578 ~ 4174873 (-)
XLOC_008957 NA non-coding downstream 1961568 3754566 ~ 3760957 (-)
XLOC_008952 NA non-coding downstream 2560066 3160438 ~ 3162459 (-)
XLOC_009014 NA non-coding upstream 1225850 6968381 ~ 6976921 (-)
XLOC_009015 CR396585.2 non-coding upstream 1266291 7008822 ~ 7008938 (-)
XLOC_009016 CR396585.1 non-coding upstream 1289566 7032097 ~ 7034722 (-)
XLOC_009017 NA non-coding upstream 1321937 7064468 ~ 7065313 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000092_02851435_02865690 PHKG1B, PHKG1, PHKG1A coding CI01000092 null 2850442 ~ 2865690 (-)
bowfin (Amia calva) AMCG00005702 phkg1,LOC107677094,LOC107747678 coding CM030142.1 CM030142.1 7989356 ~ 7999100 (-)