XLOC_009007 (brwd1)


Basic Information

Item Value
gene id XLOC_009007
gene name brwd1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 5828994 ~ 5895124 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00017755
GCCGAACATAAAGCGGGAGCAATCGTGGAGGCGCACGAAGCCTGCAATCGAcgttaaataattatataatttacaaacTACACATAAAGTTCGTCTCCAAACACCGTAGTCTTTGAGCTATGGCCGATACCACAGCCAGAAATGGGAGTATTTCACCCCTCGAATCGGAGTTATATTACTTGATATCGCGCTATCTGAGCACGGGGCCGTGTCGGAAAGCGGCCGAGGCTCTGGTGTGTGAACTGGAGGAAAATCAGCTCCTTCCACGTCGGTTGGATTGGGAAGGAAATGAACACCCGAGATCTTATGAAGATTTGGTCACAGCCAACAggcatattgcaccagaccacctTTTGCAGATATGCAAGCAAATCGGTCCGGTTCTGGACCGAGAGGTCCCGTCTGGTGTGCCAGGAGTGCACTCTCTACTGGGGGCCGGGAGACACTCTTTACTCCGAACATCAAAAGGTGAGATCAGACTGCTGCGCTAGCAGATGGAAAACCTCTACATTCGCAGCCCTTCACAGAGGGAGACCACCAGAGAGGCCTTTAAACTGCAAGGATGCAAATATTGTGGAGGTGTGCCGAGGCAGAGAGCTCACAGGAGCCCAGCGCTTCAGCTCCATCAACCCTGTCAGCAATTATCAGCACATGAAGATGCACAGGAGGATCCTGGGACATCTCTCTGCTGTGTACTGTATCGCCTTTGATCGAACAGGTTCCAGGATTTTTACGGGTTCCGACGATGCCTTGGTGAAGATCTGGTCCTCGTTTGACGGAAGGCTTCACTCCACTCTCAGAGGACATTACGCTGAGATATCAGACCTCGCTGTTAACTTTGAGAATACTCTTATTGCGGCGGGGAGCTGCGACAAAACCATTCGAGTCTGGTGCCTTCGTACATGTGCCCCAGTGGCAGTCCTGCAGGGCCACAGTGGGTCTATTACCTCTTTACAGTTCTCTCCATTTGTCAAGGGCTCCAAAAGGTACATGGTGTCCACAGGAACTGATGCAACTGTCTGTTTCTGGCAGTGGgatgtaaataataatgaattcagtgATCGTCAGCACAAGTTTACAGAGAGGCCGAGACCTGGTGTCCAGACCGTCTGCTCTTCCTTCAGCCCTGGTGGCATGTTCCTTGCAACAGGAAGCACAGATGATGTCATCAGGATCTACTACCTGGGCAGTGGCAGTCCAGAAAAACTAGCTGAGCTCGACTCTCACACAgaCAAGGTGGACAGCATCCAGTTCTGTCATTCTGGGGAGAGGTTTGTGAGTGGTAGTCGAGATGGCACTGCCCGCATATGGAGACTGCATCAGAGACATCAGTGGAAGAGCGTTTTATTGGACATGTCTGCCACTCTTCCAGGGTCTGCACCTTTAACAGACGATGAAAATTTCTTCAAACCCAAAGTGACCATGGTGTCCTGGGATCGCCACGACAACACAGTCATTACCGCCGTCAACAATCATCTCCTCAAAGTGTGGAACTCCTACACTGGACAGCTGCTGCACGTCCTTAAAGGTCATGAGGCGGAGGTGTTTGTTTTGGAGCCGCATCCCTATGACCCTCGCATCATGCTCTCTGCTGGTCATGATGGCAATGTCTTTGTATGGGACCTCATCAAGGGCACCAAAACCATGCATTACTTTAATATGATCGAAGGTCAAGGACATGGTGCTGTATTTGACTGCAAGTTCACCCCTGATGGCCATCGCTTTGCGATGACAGACTCTCATGGACATCTGGTTATTTTTGGCTTTGGAAGCTCCAAGCCTTATGAGAAGCTTCCAGACCAGGTGTTTTTTCACACCGACTACCGGCCGCTGATCCGGGACACCAATGGTTTTGTTCTGGATGAGCAGACCCAGCAGGCACCACACCTGATGCCGCCTCCCTTCCTGGTTGACGTGGATGGAAACCCTCACCCTCCCAGATTCCAAAGACTGGTCCCAGGAAGAGAAAATATTGCAGATGAGCATCTTGTTCCTCAACTTGGCTATGTTGCTACAAGTGATGGAGAGGTGGTGGAGCAGGTGATCAGTCAGCAGTCTGCAGAGAGCGAGGAGGTTCGTCACAGCGCTCTGGATTTTGCCATTCGTCAGCTTCGAGAGCATCAAGACAGACAGTCTGGCGCTCCGGGAGAGGCTGGTGTTCCTGCTGCTGCCCGTGTGCCAGAACCAGGAACTCCCCGCAGAGTGTCAGTAAACGAGCGCATGGAGGTTCAGTCTCCACCTAATGTAGGTTTGCGGCGCAGTGGACAGGTGGAGGGAGTCCGGCAGATGCACCAGAACGCTCCACGCAGTCAGATGGCCACCGAGAGAGACCTTCAGGCCTGGAGACGCAGGGTCGTGATTCCTGAGCTGACCCCAAGTggatacagGGCGCAGGAGTCATTCAGAATAGCCAAAGGTGATGAGGAGGTGAATCTTTACAACACCAAGAAAAGGAGAGTGACCCACTCCACATTCAGGGATGATTCTGATGAAGAAGGGCCGTGCCTGAAACGTACACAGTCTCGCAAACGGCAGAAGAATCAGGAGCGCAAAGAGAATCTGGCTGAAGAGTACATTGAGTTTTCATGTGAAGAGGGAGAGGAGACGGCATCTTCTGAGGCCAGTGAAGTGGAAGGGAGTGACATTGATTCATCCGCCGAAGATGAAGAGGAATGGAAGAGTGATAGCTCAAGCCGCTCCTCCAGTGATTATTCCGACTGGACGGCAGATGCAGGAATAAGTGTGCGAACGTCAGATTCTTCTAGACGACGCACTACCCGCAGGATCAGCAGCTCTgaagaggaggatgaggaggatgatgaggaggaagaagagCCAGCAGATGAGGAGCCGGCTGTAGGTGAAGAGGAGACGTCATCCCCTAGAAAGCACAAAAAAGCCAAAAGCAAAACACCAAAGcaCTCTAAACCAAGGCCATCCATTAACAGAGAGATATCGAATGAGTTCCGTCCTCCAGCTTGGATTACTGACGTTGTTCCCCGAAAGTCCCCATTTGTCCCTCAAATGGGAGATGAGGTCATCTATTTCCGTCAGGGTCATGAGGCATATGTGGATGCAGTCTGTCGCATGAACCTGTACCCAATAAACCTAGACAAACAGCCATGGAAGAAGATGCAGTTAAGAgACCAAGAGTTTGTGAAAATAACAGGGATCAAATATGAAGTTTGCCCTCCAACATTATGCTGTCTGAAACTGACCCAGATTGACCCTGGAACTGGCAAAATAACAGACCGAACCTTTTCAATAAAATATCATGATATGGCAGACGTAATAGATTTTCTGGTATTACGTCAAAGCTACGATGAGGCGCGAAACAGAGTGTGGACTTCGAATGACCGTTTTCGCTCTGTGATCGATGACGCCTGGTGGTTTGGGGCCATAGTTTGTCATGAGCCATATCAATCTGAATATCCCGACAGCCATTTTCAGTGCTTCAAAGTCAAGTGGGACAATGGCGAGACCGAAAAGCTGAGTCCATGGGACGTAGAAGCTATTCCTGAAAATGCTGAACAGCCGGAGTCGGCGAGTGCTGGAGTACCAGTGACAGATGAGGAGATGATGGATATCCTGTATAAACCTCAAAGGGGTGAATGGGGGGACAGGGGTCGGGAACAAGAGAGCGCACGCATCATTGCAGGAATAGAGCAGCTTATGACTGTGGATATTACAGCTCCTTTCTCTGGTCCGGTTGACCTCACTCAGTATCCTACATATTGTACTGTCATTGCATATCCCACCGATCTGAACACCATCAAACTGCGGCTCAAGCACAACTTCTACAGGAGGCTATCGGCACTAATCTGGGATGTGAAACACATTGAACAAAATGCCAAGACCTTCAATGAACCTCGCAGCAAGATTGCACAATCTGCCAAAATCATAACAAATGTTCTCATTAAGTTCATCAGTAAACTTCACTGCACAGACATTATGGAGATCTATAATGCTGTTGAGAACATGGAGTACTCTGACGATGAGGAAATGGATGACATTGATGCACCGGGAACCTCAGCCGGACAAAGACTTCGCCAGCCATCAGTGGAGGTTGTGCTGGACAGGGATGCTTGGAAGGACCATTGTAAACGTTTACTGGACTACATGTTTGAGTGTGAGGATTCGGAGCCTTTCCGGGATCCCGTAGATCAAAGCGATTATCCAGATTACACTAATATAATTGACACTCCTATGGACCTTGGAACTGTGCGCCAGACTCTTGAAGAAGACCGATATGAAAACCCAATAGACGTTTGTAAGGACATCAGGCTTATTTTTGCCAATGCTAAAGCCTATACGCCAAACAAACGGTCTAAGATTTACAGTATGACTTTGCGTCTGTCCGCATTTTTTGAGGAGAACATACGCAAAATAATTTCCGACTACAAGACTGCCATCAAAAGTAGCTTGAAGCTACGGCGCAGTCAGAGATGCAGGAAGAAGTCGCAACATCAGGAGTCTGTTTCTTTCAGCCAAGGATCCACACGTCAAAAGAGGGCTACTATAAAAACTCAGGAAAACACAGAACAGTCTACAGCCAAATCTACCTCAGCCAAAGTGTCTGGACCAGAGCGTCGCAGAGCCCACGAAGCCAAGGAAACCTTCAGACGGAGTAGCTCATCTTCTTCTGGATCTGATCAGGACAGCAAACAGTCTTTGAGTCAGtcagatgaggatgatgaacaTTCGTCTTCATCACGTGCCATGAGACGCGAGACTAGGGCCACAAGAAAAAAAGCTGCACAGAATAAAGGAGCGAAATCAAGAAGACCAGAGAGCCACGTCAAGATGAATGGGCGCAGCAGGTCACATGAGCGTCAGAAACCAAGAACATCTAGTGATTCTGACCACGAACCATCGCAAGGCTCAGACGAAGCTTCAGAGAATGAGTCTTCACCTTCTGTCAGCCGCCGACCGAGGACACGCAAGACTGCCATGGCTGCAGTCAATAAAATGAAACTCATTGATACCTTGGGAGATGAGGAAGGCACGGATGATGAAGGTGGTGGTGGCAGCACCCGACCCGCAACCCGTGCTAGCAAACGCTCCGCTGTCATTCAGAGCAGTTCTGATTCAGATGACGAGGAGGAGGCGGCGGCCTCACAAGAGGAGTCGAATGAAAGTGGTTCTTCAGCCAGTGAAGGAGAGAAAAGTGCTGGCAGCGCAGACAGTGACTCCTCTTCCCACAGCAAAAAGAACAGCAGAACTGCTGGACGGAGACCATGTAGACGACCAGCAGAGAAAAAGGAAACTTCTCCGTTAACTAATGGACATGGCACCAAACGTCAGTGGGAGGAAAGTGATGACAATTCAGAAGATGGGGGTAGTCCGATTGAAAGTGAGAATTTGGAGTCTGACAACGACCTTGTTGTCAGGCGAAAGTCCACCAGGAGGACTGCAAAAGCTGCtgtcagtaaaataaaaaaaattaataatactgATGCTGAAGAGGAGGAAAATTGCACCAGGGATAGACGTCAGAAGCATCGGTCAATAACGCAGGAGTCTGAAAATAGTTCAGATGAGGAAGTTGAGACGACCAAAACTCTCAAGCACCCCCATCAGAATGGAAGAAAGGTGGATGCGAAAGAACTGAAGAGGTGTAAAGCACCATCAGAACGCCAAGAACAATCTCCTGCCGCGAAACAGAAAACTACCCACAAGAAATCTTCAGCCACGGATGCATGCATGTCAACAACCCAGGATTCAGAAGAACTCAGTGATGATGTGGAAAAATCAGTCACTCACAGGAAAAGAATTGCATCAGAAGATGAAGAGAATCAAAGTGATGACGCAGATCAAAGAAGGGTTCCCAAAAACAGAAACCGGTCATCCAATGCTCGCAAACAGAAGCTCTGTGCGAGTTCGGATGAATCCAGTTCGGAAAGCGATGAAAAGGCAGACCGAGGACGAATAAAGAGTGAGGGCACTTCTTCAGACGAATGGCAAAAGAGTGACACATCAGAAGAAGACAAGAAGACACATCCACAGAGAAAGCCTTGCCCTACGGTTGCATCCAAAGGAGTCTCTTTGAGAACTCGTCCCAAGAAGAACTACATTATGGAGGACTCCGAAGAAGAATTTAGTCCTAAGATGGACGTGCAAGCAAAGAATGGAGTAAAAAATCAGCAGGCCAACTCCCGGACAAGAAAACCTTCAGGTGGCGGATTCAAAAGGAAACACGGTGGCTCCTCCGAGTCAGACGCAGACAGCAAAAGCAGTAGGAGCAGTGATGGTAATAAGCTTGCGGAAGCTCAAAGAAAAAGTGCAAAACGCTTCAAGCAATTAATGGGCTCGACGGACTCTGAGAGCGATTTTGAAACTAGGTGCAAATCAGAGAATGGTCGGGCGCAAAGGTCTCAGGGGAAGCTTCCTACAGTGTCCCGACAACGACGAAAGCAAAGTGAAAGCGACAAAGGGAGCAATGATAACGGAAGCAATTTTGAGAGCGAAGAATCTGAATCAGAAGCAAGCTCAGGTTCACGAAGCAGTCCAAAGAGAAGGCTGAGAGACCGTGACCGAGGAACCGCACGCTCGAGGAAACCTCGCAGGGTTGTTTCCGATGACGATAGTGACGTGTCGTTTGAGAAACCTCGTCGAGGCAGGCGCATCCAGACCAGAAACAAAGGCAAACGGACTGTGAATTACCAAGACAGTGAATGAAGGACAGTCGAGCCATGCAAAAGACACTAACTGAAGACCTTGAAGACACTTGATTGTCCCAACATTAAACAATGGTAGTAGCACTGGAGTCCTAGATATACTGTGAATCGGTTTCATTCAgggatattatttatattttctatgaAAAAAATAAGCATAACAAATGAACTATAAATAAGATGTATTTGATCTACTGGTTTGGCTGTTCAAACCAGCCCCACTCTGTGATTCGGCCAACAGGAAAGACTGCAAAGAGAAGCATTGTTTGCTTGGGTGCTATCTTAATATACCTCCTGTTTAATCGAGCATATTTGCTGGCTTGCACTAAAAGGCACACTGTAATGAGGTATTTTATACACTAGTTCTGCATTAGAAACTCAGGGGTCAACTACGTTTACCATGTTCTCAGAGttgcatttgtttgtttcaatCTTTAGTTCTAGGATTCTAGCGTCGTGTTTTTGACATGAGTATTTAGGTCCAAACACAGTTTGCGAAAAAGAACAAGTCGTCTTTGACTTTGACACAAACTCTGTATCGTCACTGTTAAATGAATTGTTGAGCCAAATTGTACAAACATTCTTCTTCCAGTCATCCTTTTGGTTCCTTTTCGATTGATTTTCGTTGACCATCTTTCCAGGTTTCTGAGAATCAGTTTTTGTAGCAAAGcgttgtatatttaaaaaaaaaataataattcctctGTCAAGCattacttttgttttgtatgCGTTTGAAATGATTTGCCATGCCATGAACTATGAATTGGTACCTATTTGCTAAGTACAGTAAATCAAGAGAGTACTTCCAGCAAAGTACTGTGATTTCTCATATTGGGAAGATGTTTTAGTGATCTGTTGCGTACTTTCAGTATTAATTACTTTTCAGACTTAACTTATGAACAGCAATTAACTTTTGTACACAGTCTTTGAATTGTGCATCGCAGTTGATGTAATGCagttgtcagttggcattttgcttaatgttttttttttttcataagagCTTCTTTAATACAAGTTTGAATGAGGATGTTGAGCCTGTTGGCCgtttaagagagagagagggataacTTCCATTAAATAAAGTACTGTTTCAGGTTGGAATGCGAATCTGTTTTTCACTTGTTTCAATAAATCTTTCATTGAGCAGATGCAGGAcaaattaaatgtcattttttgt
>TCONS_00017756
atgccaactgacccagctgaagctcgatccaAGTTATATTACTTGATATCGCGCTATCTGAGCACGGGGCCGTGTCGGAAAGCGGCCGAGCTCCTTCCACGTCGGTTGGATTGGGAAGGAAATGAACACCCGAGATCTTATGAAGATTTGGTCACAGCCAACAggcatattgcaccagaccacctTTTGCAGATATGCAAGCAAATCGGTCCGGTTCTGGACCGAGAGGTCCCGTCTGGTGTGCCAGGAGTGCACTCTCTACTGGGGGCCGGGAGACACTCTTTACTCCGAACATCAAAAGGTGAGATCAGGTGA

Function

symbol description
brwd1 Predicted to be involved in cytoskeleton organization; regulation of cell shape; and regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human BRWD1 (bromodomain and WD repeat domain containing 1).

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0007010 cytoskeleton organization biological_process
GO:0008286 insulin receptor signaling pathway biological_process
GO:0008360 regulation of cell shape biological_process
GO:0005634 nucleus cellular_component
GO:0005158 insulin receptor binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-041111-120 Predicted to be involved in cytoskeleton organization; regulation of cell shape; and regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human BRWD1 (bromodomain and WD repeat domain containing 1).

Ensembl:

ensembl_id ENSDARG00000074747

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00017755 False 7860 mRNA 0.47 42 5828994 5892650
TCONS_00017756 True 315 mRNA 0.53 4 5887848 5895124

Neighbor

gene id symbol gene type direction distance location
XLOC_009006 rbp2a coding downstream 13988 5803458 ~ 5815006 (-)
XLOC_009005 hnrnpl2 coding downstream 29811 5784212 ~ 5799183 (-)
XLOC_009004 chchd2 coding downstream 48346 5773119 ~ 5780648 (-)
XLOC_009003 phkg1a coding downstream 86463 5722525 ~ 5742531 (-)
XLOC_009002 urb1 coding downstream 108328 5627877 ~ 5720666 (-)
XLOC_009008 NA coding upstream 3286 5898410 ~ 5901982 (-)
XLOC_009009 dscamb coding upstream 243299 6138423 ~ 6404443 (-)
XLOC_009010 atm coding upstream 619840 6514964 ~ 6650993 (-)
XLOC_009011 meis3 coding upstream 942915 6838039 ~ 6863317 (-)
XLOC_009012 ech1 coding upstream 1031863 6926987 ~ 6946286 (-)
XLOC_008997 FO704791.1 non-coding downstream 445814 5383062 ~ 5383180 (-)
XLOC_008973 CU467614.1 non-coding downstream 1463722 4365158 ~ 4365272 (-)
XLOC_008970 NA non-coding downstream 1654121 4163578 ~ 4174873 (-)
XLOC_008957 NA non-coding downstream 2068037 3754566 ~ 3760957 (-)
XLOC_008952 NA non-coding downstream 2666535 3160438 ~ 3162459 (-)
XLOC_009014 NA non-coding upstream 1073257 6968381 ~ 6976921 (-)
XLOC_009015 CR396585.2 non-coding upstream 1113698 7008822 ~ 7008938 (-)
XLOC_009016 CR396585.1 non-coding upstream 1136973 7032097 ~ 7034722 (-)
XLOC_009017 NA non-coding upstream 1169344 7064468 ~ 7065313 (-)

Expression


Co-expression Network