XLOC_009013 (mrps22)


Basic Information

Item Value
gene id XLOC_009013
gene name mrps22
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 6948644 ~ 6966245 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00017771
ATATACAGCATGGCTGCGCTCAGCGTTACGAGGTGTTTAGTACGGTCTTACTTCTGCGTTCAATCTGCTCATAAAAATGTGCAAACTTGTTTGCAGACAAGCACACGAATCTTCAGTGTGTCGACAACACGCAATAACTCTGAGAATGTTCTGAAAGCTCAGTTCACAGATAAAGAGGTTCAAGATATTCTGACTAAAATCACTGGTCTCAAACTGGACAAAGTATTTCGACCCATAATCCAGCAACTAACACCACCTAAATACAAGCTTTTGACAGACACTGAGTTAGAggagGCAGTTCATAAGGCAGAGGAACAtgcaaaacatttgctggaaatgCCACCCATTCTGCCAGAGAGGAAGCCAATAGATGATGTGCTGGCTGAAGATCGAATACTGGAGGGCATGGACACTGCTAAATATGTCTTCACTGACATAAACTTTAACATCCCACATAGAGAAAGATTCATAGTTGTGAGAGAGCCGAGTGGAACTCTGAGGAAAGCGTCATGGAATGAAAGAGATAGGATAATACAAATTTACTTTCCTAAAGAGGGTCGCAAGGTCACACCACCACCTGTCTTTAAAGAAGAAAACCTCAGGTTGGTTTTTGAACAGGATAGACATGAGGATGTGCTAAACCAATGTGTTGTCCAGTTTGAGCCAGACTCTGCAGAATTTAACAAAGTGTTCATGCTGACCTATGAAGACATTGACAAGCATGGCAAATACGATCTACTCAGATCCACGCGTTTCTTCGGTGGTTTGGCCTGGCATATGGTTAATGAACGCCGAATTGATGGCCTTCTTGTGGAAATGTTGCAGCGAGACCTAATGCAGGATGCGGTGAAGTTGGTGCGTCTTTTTAATTTAGTACATCCTCAGAGTGAATCTGCAGAGCATGCTCAAAGACAACAAGCCGCTGACCTGGACCTTCTAAAGATCTATGCCCAGTATGAGTCAAGTAGAGCTGGATTCATTGAGCTGGCTGTGCAGACCTATGAGCAGACTAAAGCACTGGGCTCTTTTTGAATGCCTCAAAGTGTTAAAGGGaaaagAGAAACTTCCCATGGTTTGGAACTGCTTGAGGTTGCCTAAATGAAGAGTGATATTTCagtttgaggtgaactatcccttaaataaGGGGAGCTAAATAGTTGTTATGAATGGAATTATCTGTCATATTTCAAATGTTCAAGTCATTTGTATCGTTCTGTACATAATAAAGAACTTTTTGTATAAAAGCCA
>TCONS_00017772
AGCATGGCTGCGCTCAGCGTTACGAGGTGTTTAGTACGGTCTTACTTCTGCGTTCAATCTGCTCATAAAAATGTGCAAACTTGTTTGCAGACAAGCACACGAATCTTCAGTGTGTCGACAACACGCAATAGAAAGATTCATAGTTGTGAGAGAGCCGAGTGGAACTCTGAGGAAAGCGTCATGGAATGAAAGAGATAGGATAATACAAATTTACTTTCCTAAAGAGGGTCGCAAGGTCACACCACCACCTGTCTTTAAAGAAGAAAACCTCAGGTTGGTTTTTGAACAGGATAGACATGAGGATGTGCTAAACCAATGTGTTGTCCAGTTTGAGCCAGACTCTGCAGAATTTAACAAAGTGTTCATGCTGACCTATGAAGACATTGACAAGCATGGCAAATACGATCTACTCAGATCCACGCGTTTCTTCGGTGGTTTGGCCTGGCATATGGTTAATGAACGCCGAATTGATGGCCTTCTTGTGGAAATGTTGCAGCGAGACCTAATGCAGGATGCGGTGAAGTTGGTGCGTCTTTTTAATTTAGTACATCCTCAGAGTGAATCTGCAGAGCATGCTCAAAGACAACAAGCCGCTGACCTGGACCTTCTAAAGATCTATGCCCAGTATGAGTCAAGTAGAGCTGGATTCATTGAGCTGGCTGTGCAGACCTATGAGCAGACTAAAGCACTGGGCTCTTTTTGAATGCCTCAAAGTGTTAAAGGGaaaagAGAAACTTCCCATGGTTTGGAACTGCTTGAGGTTGCCTAAATGAAGAGTGATATTTCagtttgaggtgaactatcccttaaataaGGGGAGCTAAATAGTTGTTATGAATGGAATTATCTGTCATATTTCAAATGTTCAAGTCATTTGTATCGTTCTGTACAT
>TCONS_00017773
ATATACAGCATGGCTGCGCTCAGCGTTACGAGGTGTTTAGTACGGTCTTACTTCTGCGTTCAATCTGCTCATAAAAATGTGCAAACTTGTTTGCAGACAAGCACACGAATCTTCAGTGTGTCGACAACACGCAATAGTGTTCATGCTGACCTATGAAGACATTGACAAGCATGGCAAATACGATCTACTCAGATCCACGCGTTTCTTCGGTGGTTTGGCCTGGCATATGGTTAATGAACGCCGAATTGATGGCCTTCTTGTGGAAATGTTGCAGCGAGACCTAATGCAGGATGCGGTGAAGTTGGTGCGTCTTTTTAATTTAGTACATCCTCAGAGTGAATCTGCAGAGCATGCTCAAAGACAACAAGCCGCTGACCTGGACCTTCTAAAGATCTATGCCCAGTATGAGTCAAGTAGAGCTGGATTCATTGAGCTGGCTGTGCAGACCTATGAGCAGACTAAAGCACTGGGCTCTTTTTGAATGCCTCAAAGTGTTAAAGGGGTAATGCAcacaaaaatatcaaaaatgtaaaaaaaagttaataaataaataaaaacc
>TCONS_00017774
GTTACGAGGTGTTTAGTACGGTCTTACTTCTGCGTTCAATCTGCTCATAAAAATGTGCAAACTTGTTTGCAGACAAGCACACGAATCTTCAGTGTGTCGACAACACGCAATAACTCTGAGAATGTTCTGAAAGCTCAGTTCACAGATAAAGAGGTTCAAGATATTCTGACTAAAATCACTGGTCTCAAACTGGACAAAGTATTTCGACCCATAATCCAGCAACTAACACCACCTAAATACAAGCTTTTGACAGACACTGAGTTAGAggagGAAAGATTCATAGTTGTGAGAGAGCCGAGTGGAACTCTGAGGAAAGCGTCATGGAATGAAAGAGATAGGATAATACAAATTTACTTTCCTAAAGAGGGTC

Function

symbol description
mrps22 Predicted to be a structural constituent of ribosome. Predicted to be part of mitochondrial small ribosomal subunit. Human ortholog(s) of this gene implicated in combined oxidative phosphorylation deficiency 5 and ovarian dysgenesis 7. Orthologous to human MRPS22 (mitochondrial ribosomal protein S22).

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005763 mitochondrial small ribosomal subunit cellular_component
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
ko03011 Ribosome
ko03029 Mitochondrial biogenesis

ZFIN:

id description
ZDB-GENE-070615-31 Predicted to be a structural constituent of ribosome. Predicted to be part of mitochondrial small ribosomal subunit. Human ortholog(s) of this gene implicated in combined oxidative phosphorylation deficiency 5 and ovarian dysgenesis 7. Orthologous to human MRPS22 (mitochondrial ribosomal protein S22).

Ensembl:

ensembl_id ENSDARG00000018073

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00017771 False 1248 mRNA 0.42 9 6948644 6966245
TCONS_00017772 False 892 nonsense_mediated_decay 0.43 7 6948671 6966239
TCONS_00017773 False 559 nonsense_mediated_decay 0.43 4 6948893 6966245
TCONS_00017774 True 370 mRNA 0.40 3 6963632 6966221

Neighbor

gene id symbol gene type direction distance location
XLOC_009012 ech1 coding downstream 2358 6926987 ~ 6946286 (-)
XLOC_009011 meis3 coding downstream 85327 6838039 ~ 6863317 (-)
XLOC_009010 atm coding downstream 297651 6514964 ~ 6650993 (-)
XLOC_009009 dscamb coding downstream 544201 6138423 ~ 6404443 (-)
XLOC_009008 NA coding downstream 1046662 5898410 ~ 5901982 (-)
XLOC_009014 NA coding upstream 2136 6968381 ~ 6976921 (-)
XLOC_009015 CR396585.2 coding upstream 42577 7008822 ~ 7008938 (-)
XLOC_009016 CR396585.1 coding upstream 65852 7032097 ~ 7034722 (-)
XLOC_009017 NA coding upstream 98223 7064468 ~ 7065313 (-)
XLOC_009018 SLC7A1 coding upstream 333511 7299756 ~ 7337537 (-)
XLOC_008997 FO704791.1 non-coding downstream 1565464 5383062 ~ 5383180 (-)
XLOC_008973 CU467614.1 non-coding downstream 2583372 4365158 ~ 4365272 (-)
XLOC_008970 NA non-coding downstream 2773771 4163578 ~ 4174873 (-)
XLOC_008957 NA non-coding downstream 3187687 3754566 ~ 3760957 (-)
XLOC_009023 NA non-coding upstream 1383784 8350029 ~ 8394601 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000363_00476704_00479718 NA coding CI01000363 null 476704 ~ 480108 (+)