XLOC_009019 (gbe1b)


Basic Information

Item Value
gene id XLOC_009019
gene name gbe1b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 7384520 ~ 7598542 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00017782
GGTCTGACGCAAACATGGCAGAATCGGAGAGTAACATTTCAGTTCCTCACTTGAAATCTCTTCTGCAAATGGATCCCTACCTCAAGCCCTTTGAAAAGGACTTCGAGAGGAGGTATGGGCTGTTTGAGAAGCAGCTGGCTTTCTTGGAGGAGGCTGAAGGAGGCTTTGATCATTTCACTCGCAGTTATGAGAGTTTTGGCGTTCAGCGGCTGCAGGACAACAGCCTGGTCTTTAAGGAATGGGCTCCGGCTGCAGAGGCTCTGTTCCTCACTGGAGACTTCAATGGCTGGGATAAGTTTTCCCATCCCTACGCTAAAAAGGAGTTTGGGAAATGGGAGCTTCACATTCCTCCGAAAGAGGACAAGACACCTGCCGTCACTCATAACTCCAAGCTGAAGGTGGTTGTTCACACCAGTGCGGGTGAGCGGCTGTACCGAATCTCTCCTTGGGCAAAGTATGTGACCAGGCATGAGAAGTCCGTCATCTATGATTGGGTGCACTGGGACCCTCCTCAACCTTACATTCACAAGCATCCCCGTCCACAGAAGCCCAGGAGCTTGCGGATATACGAGTCCCATGTTGGCATTGCTTCTCCAGAGGGCAAAATTGCGTCCTACAGCAACTTCACCCACAATGTGCTGCCCCGCATCAAAGATCTGGGTTATAACAGCATTCAGCTGATGGCCATCATGGAGCATGCCTACTATGCTAGCTTCGGTTACCAGGTCACGAGTTTTTTTGCAGCATCAAGCCGTTACGGGACCCCGGAGGAGCTGAAGGAGCTGATTGACGTGGCTCATTCTCTCGGCATCATCGTCCTGCTTGATGTGGTGCACAGCCACGCGTCCAAAAACACAGAGGACGGCCTGAACCTGTTTGACGGCTCCGACTCCTGCTTCTTCCACAGCGGGCCCCGTGGAGAACACAGCCTGTGGGACAGCAGACTCTTCAACTACTCCAGctgGGAGGTGTTGCGTTTTCTCCTGTCGAACTTGCGCTGGTGGATGGAGGAGTACAAGTTTGATGGATTCAGGTTCGACGGAGTCACATCCATGCTCTACCATCATCACGGCATCGGATCTGGATTTTCTGGGGATTATAACGAGTACTTTGGCCTGCAGGTGGATGAGGACTCTCTGGTCTACCTGATGTTGGCGAACCATATTTTACACACTCTCTATGAAGACTGCATCACTATCGCTGAGgaTGTGTCCGGGATGCCTACACTTTGCTGTCCAGTCCAACAAGGAGGTCTGGGTTTTGACTACCGCCTGGCCATGGCCATTCCAGACAAATGGATTCAAATCCTCAAGGAATTCAAGGACGAAGACTGGAACATGGGAAACATTGTGTTTACGATGACCAACAGGCGATATGGAGAGAAATGCATTGCTTACGCCGAGAGCCATGACCAGgcACTGGTGGGAGACAAAACGCTGGCCTTCTGGCTGATGGACAAAGAGATGTACACCAGCATGAGCGCTTTGATTCCCATGAACTCCATTATTGATCGGGGCATCCAGCTTCATAAGATGATCCGACTGCTTACCCACAGCCTGGGAGGAGAGGGATACCTCAACTTCATGGGCAATGAGTTTGGCCATCCAGAGTGGCTGGATTTTCCACGAATCGGCAATAATGAGAGTTATCATTATGCCCGCCGGCAGTATAACCTGGTGGACATGGATCATCTGCGCTACCGGCAGCTGTACGCTTTTGACCGAGACATGAACCGCACGGAGGACAACTACGGCTGGCTGGCTGCTCCACCGGCATACGTCAGTGTCAAGCATGAGGGTGACAAGGTGATCGTATTCGAGAGAGCAAACCTCATCTTCATCTTCAACTTCCACCCTTTCAACAGCTACAGCGACTACAGGGTGGCCGTGGGGCCGGCGGGGAAATATCCTTCACTAAACTCTGATTACAGATATAAAATCAAGCTGGACTCTGATGAGATCCAATATGGAGGCCATGGCAGACTGGATCACAATACTGAGTTCTTCACTGAGGCAATGGGACTTAACAATCGGCCAAACTCTATGATG
>TCONS_00017783
ATCGATCCGCCTCTCCGCCTTCCCTCAAATCCCCTAGTCCTTCCCTTAAAGCCCCACACCGTCATTAAAAGAGCAAACATTAAAACACGAGCCCACAAAGCGACATCCTCCAGTCTCCGTAAGGACAGGACATAAAAACACCAGCTTGTGCTTTAAAACACACTGCAAAACCACAAACGCTGCACACTGCTGCCTATAAAAGCAGCACTCTCAACCTTCAATCGAGACAGTCGCTGCTCGATTGCTCTGGTCTGACGCAAACATGGCAGAATCGGAGAGTAACATTTCAGTTCCTCACTTGAAATCTCTTCTGCAAATGGATCCCTACCTCAAGCCCTTTGAAAAGGACTTCGAGAGGAGGTATGGGCTGTTTGAGAAGCAGCTGGCTTTCTTGGAGGAGGCTGAAGGAGGCTTTGATCATTTCACTCGCAGTTATGAGAGTTTTGGCGTTCAGCGGCTGCAGGACAACAGCCTGGTCTTTAAGGAATGGGCTCCGGCTGCAGAGGCTCTGTTCCTCACTGGAGACTTCAATGGCTGGGATAAGTTTTCCCATCCCTACGCTAAAAAGGAGTTTGGGAAATGGGAGCTTCACATTCCTCCGAAAGAGGACAAGACACCTGCCGTCACTCATAACTCCAAGCTGAAGGTGGTTGTTCACACCAGTGCGGGTGAGCGGCTGTACCGAATCTCTCCTTGGGCAAAGTATGTGACCAGGCATGAGAAGTCCGTCATCTATGATTGGGTGCACTGGGACCCTCCTCAACCTTACATTCACAAGCATCCCCGTCCACAGAAGCCCAGGAGCTTGCGGATATACGAGTCCCATGTTGGCATTGCTTCTCCAGAGGGCAAAATTGCGTCCTACAGCAACTTCACCCACAATGTGCTGCCCCGCATCAAAGATCTGGGTTATAACAGCATTCAGCTGATGGCCATCATGGAGCATGCCTACTATGCTAGCTTCGGTTACCAGGTCACGAGTTTTTTTGCAGCATCAAGCCGTTACGGGACCCCGGAGGAGCTGAAGGAGCTGATTGACGTGGCTCATTCTCTCGGCATCATCGTCCTGCTTGATGTGGTGCACAGCCACGCGTCCAAAAACACAGAGGACGGCCTGAACCTGTTTGACGGCTCCGACTCCTGCTTCTTCCACAGCGGGCCCCGTGGAGAACACAGCCTGTGGGACAGCAGACTCTTCAACTACTCCAGctgGGAGGTGTTGCGTTTTCTCCTGTCGAACTTGCGCTGGTGGATGGAGGAGTACAAGTTTGATGGATTCAGGTTCGACGGAGTCACATCCATGCTCTACCATCATCACGGCATCGGATCTGGATTTTCTGGGGATTATAACGAGTACTTTGGCCTGCAGGTGGATGAGGACTCTCTGGTCTACCTGATGTTGGCGAACCATATTTTACACACTCTCTATGAAGACTGCATCACTATCGCTGAGgaTGTGTCCGGGATGCCTACACTTTGCTGTCCAGTCCAACAAGGAGGTCTGGGTTTTGACTACCGCCTGGCCATGGCCATTCCAGACAAATGGATTCAAATCCTCAAGGAATTCAAGGACGAAGACTGGAACATGGGAAACATTGTGTTTACGATGACCAACAGGCGATATGGAGAGAAATGCATTGCTTACGCCGAGAGCCATGACCAGgcACTGGTGGGAGACAAAACGCTGGCCTTCTGGCTGATGGACAAAGAGATGTACACCAGCATGAGCGCTTTGATTCCCATGAACTCCATTATTGATCGGGGCATCCAGCTTCATAAGATGATCCGACTGCTTACCCACAGCCTGGGAGGAGAGGGATACCTCAACTTCATGGGCAATGAGTTTGGCCATCCAGAGTGGCTGGATTTTCCACGAATCGGCAATAATGAGAGTTATCATTATGCCCGCCGGCAGTATAACCTGGTGGACATGGATCATCTGCGCTACCGGCAGCTGTACGCTTTTGACCGAGACATGAACCGCACGGAGGACAACTACGGCTGGCTGGCTGCTCCACCGGCATACGTCAGTGTCAAGCATGAGGGTGACAAGGTGATCGTATTCGAGAGAGCAAACCTCATCTTCATCTTCAACTTCCACCCTTTCAACAGCTACAGCGACTACAGGGTGGCCGTGGGGCCGGCGGGGAAATATCCTTCACTAAACTCTGATTACAGGTCACAAGCTGAGTGTTTTTACTGGAAGCTACAGCTAGGATGAATGAATGTGTGGTGTGGAAACCAATGTTCACTCAGACATTTCACAGTCGAATAGAAATGGAAAGTAACAAGTGATTTATATATGATCTTTCAAaacagaagattttttttgtaaagtatagTTCTTGTTTTATGTATACATTTAAGATCTAAAGcttaaatatgtaatatgtatttaAGTCAGAATCActttcgtttatttatttttagctaattatcccaaCCACTCTCATATAATTTGTTCAGAGACCCCTCTTTTACGTGAGTCTAATCTGCTGTAATTTGtctaatgacccagtctgttgtgattggttgactgggttcagtgcgagacagagagaaatggccACCGTGGATATGAATAAGCAGAAAGTATGTGAAAGCCCAATGCAAGattgcaataaagcaatgcaggtaaacaccagcatattattCTACTCATAACCCTAACCCCGAGtaacaacacacattcagtattattcCACACAGTAGCAAATGTTGAACTATAGTGAAAATTGGCCGCGCTGCATGTGTGTATGAAGAGCTGATAGttgccatagcaaagacaaatggCAGAAGGCCACGAATTCAGTAAAGCATTTAAATTGGTAAATGAAGATGCATATGTCacgttttcaacatggttttagacgcaatatgtgaataaccccatacagatttaacctgacaGATGAATTACAAGCactgattaaaaatacataaggTTTATAGGTTTGTATGCGGAAAATTTaagtttgtgaggccgccacggacacccCCTTTG

Function

symbol description
gbe1b Predicted to enable 1,4-alpha-glucan branching enzyme activity. Predicted to be involved in glycogen biosynthetic process. Predicted to be active in cytoplasm. Human ortholog(s) of this gene implicated in glycogen storage disease IV and pulmonary tuberculosis. Orthologous to human GBE1 (1,4-alpha-glucan branching enzyme 1).

GO:

id name namespace
GO:0005975 carbohydrate metabolic process biological_process
GO:0005978 glycogen biosynthetic process biological_process
GO:0005737 cytoplasm cellular_component
GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds molecular_function
GO:0043169 cation binding molecular_function
GO:0003824 catalytic activity molecular_function
GO:0003844 1,4-alpha-glucan branching enzyme activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-110914-16 Predicted to enable 1,4-alpha-glucan branching enzyme activity. Predicted to be involved in glycogen biosynthetic process. Predicted to be active in cytoplasm. Human ortholog(s) of this gene implicated in glycogen storage disease IV and pulmonary tuberculosis. Orthologous to human GBE1 (1,4-alpha-glucan branching enzyme 1).

Ensembl:

ensembl_id ENSDARG00000099524

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00017782 False 2048 mRNA 0.51 15 7384520 7598294
TCONS_00017783 True 3004 mRNA 0.47 14 7409313 7598542

Neighbor

gene id symbol gene type direction distance location
XLOC_009018 SLC7A1 coding downstream 46983 7299756 ~ 7337537 (-)
XLOC_009017 NA coding downstream 319207 7064468 ~ 7065313 (-)
XLOC_009016 CR396585.1 coding downstream 349798 7032097 ~ 7034722 (-)
XLOC_009015 CR396585.2 coding downstream 375582 7008822 ~ 7008938 (-)
XLOC_009014 NA coding downstream 407599 6968381 ~ 6976921 (-)
XLOC_009020 bach1a coding upstream 572342 8170884 ~ 8191992 (-)
XLOC_009021 tnfrsf19 coding upstream 636989 8235531 ~ 8309217 (-)
XLOC_009022 si:ch211-113p18.3 coding upstream 716390 8314932 ~ 8319988 (-)
XLOC_009023 NA coding upstream 751487 8350029 ~ 8394601 (-)
XLOC_009024 npas1 coding upstream 826169 8424711 ~ 8517555 (-)
XLOC_009008 NA non-coding downstream 1482538 5898410 ~ 5901982 (-)
XLOC_009025 NA non-coding upstream 1001049 8599591 ~ 8602094 (-)
XLOC_009028 CR847977.1 non-coding upstream 1389101 8987643 ~ 8987759 (-)
XLOC_009031 NA non-coding upstream 1590611 9189153 ~ 9191277 (-)
XLOC_009039 AL807754.1 non-coding upstream 2587512 10186054 ~ 10186169 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000308_01300803_01359626 NA coding CI01000308 null 1300619 ~ 1360097 (-)