XLOC_009020 (bach1a)


Basic Information

Item Value
gene id XLOC_009020
gene name bach1a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 8170884 ~ 8191992 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00017784
CTTTCAGACGCAAACGCAGTACGTGCTGTGCGTGCTATGACGCGCACTCTCGCTGCAGCACTGCACAGTCACATGACAGGCGTGTAGACATTATGGAGCCTTTTCTCTGTCAAACTTTAATCCGATTTAACTTTTAGACTGCAAAAGCGATGGACAAAGCTGGAATTTTGACGGCTTCTGATGTCCAGTGATATGTCAGCTAAAGCCCTGCGTCATGTCTGTGGATGGCCCCCGGACCTCTGTTTTCACCTTCCAGTCCGCTGTTCACAGCCATCATGTTCTGCGCTCGCTGGAGGAGCTCAGACAGAAAGAGCTCTTGTGTGATGTGACGGTTGAAGTGGAGCGCAGGAGCTTTCGAGCACACTCTTCTGTGCTGGCTTCCTGCAGCCACTATTTTTACACCAGACTGACAAACCACAGCCAAGCAAACCCCACTGTCAGCTTGCCGGATGAGGTCACGGTGGAAGGATTTGAGCCTCTTCTGCAGTTCGCCTACACTGCGAAACTTCACTTCACAAAAGAAAACATCCTGGAGATCCAAAGGTGTGCCCGAGTTCTTGGATTTCAAAACCTTGATGAAGCCTGCTTTGAATTCCTCGTCCCCAGGTTTTCTGCCAAAGGTGGAACCTCTAAAAAAGGGaacggcaaaagcaagagccAGGTTTCTCATGAGAATTCCCAAGCCATCTCCAGTCCTAATGATCAAAACCCTGAAACTGGAGAAGATCACATACCTCGGGATGCAGGAAGTGTCATGCCAGCTGCACCTCCATCATCCTCTGTAGAAAGTCCAAAAGAATGTCCTACCATCTCAAATGAGAAAGACATGCAGTTAGAGTTATCCACGCTCTACGCAAGACCATCTTCATACCACATGAGTGATGGTCAAGACCAGTTTTGCTTGCAGAACTGTGGCCCTCAGTTGCCTTCCTCTTCAATGGCGCCTGGACAAGTTTGTCCATTCCTGTCTGTTTCAACCACCAATGACAACGAGAAACTGCCTTCAGCTGCAGCTGCCTGTGGTGGCGGGGACATTTTAGCAATGGAGGAGGAATTCCAGAAGGAATTAGCTATGGACATCCATTGTGAACCGTGTACTGATAGCATAGCCAACACAACGGCAGGCCACTTTGACCAAGAAGAAGGATCTCTACTGCCGTCCTCCAACTGCAGCCAACTCTGTCCTCTGAATTCTACAGAATCCATTGGGGTTTTGGATGGGATTTCCAGTTCTCCAGACCTCGATGGCATTGGCACCAACAACAATGAGGCGTTTGAGTCCAACGAACAGACGTTTTCTGAACTGACTCCTAAAGATAGCAGCAATGAACGAAGCACAGTGGAAAGGGAAGTTGCTGAACATCTTGCGAAAGGTTTTTGGCCGGATTTGAGTTCCTCTTTGAATGAGCCTCTGCCGCTGGAGTCCATCGACCAGGCATCTGCAGGAAATGGCTCGGACTTCCACTGGCTGAAGCATCTGGATCTGGGAGCTGCGCCCGATGATTGTCCTTTCCTGAGAGACCTGAGCTCCAACAACAGACCAGATTCTGGAGGGGATGCTCTGTCTAAAGAGGACACCAGAGACAGTGCCTGCTTGTCCCCCATTAACTCCAGGGAAAACTCTGAGTGTGATTCGGATGGAGACTGTAAACCATGTGGCAGCAGCGAACAACCACAGGAGGAGGTGGATTTGCCTTTCCTTGTGGAGCAGATTTCCAGCATGACCCGGAGAGCGTTCCTGCAGATGTTGAAACGCGAGCAGCTGACCCCAGAACAGCTGGAGTATGTTCAAGATGTAAGACGGCGGAGTAAGAATCGCGTGGCTGCGCAGCGCTGTCGCAAGAGGAAGTTAGACTGCATTTACCGTCTGGAAGGAGACATCAAGAAACtgAAATGCGAAAGGGAGAAACTGCTTCAAGACCACAACCAGCTGAAGCTCAGCATGGAGGACTTGCGTCAGAAGCTGTCAGGTCTGTGTCAGAGTCTCAGCCTTGACTCTTCACCGCAGTCCGAGCAACTGCAAGCACTGGTCAGGTACGTCTCCTCCGACTGTCCTACATCCATCCTCCTCACCCCCATGGCCTCCCCGAGCCTGGCTGGCCCAGAGCGGGACGCCCAAGCAAACGCCTCCCTGGATGCCTTTCTGGCAGAAACATGTCCTGAAGGAGACACCGTAGCACTCAGGTCTCCCTCTGCCTTCCTGGAAGAGCACGATCAGAGCACTGTTACAGATCCTGCTCTATGACGTACAAACAGATCAAAGCAGCCTGAGATTGGTCTGGGATTGGTCGTTACTCAGGAGCTTACCTTTCTGCTGCCGCCAGTTACACTTTTATGAGCATGACTTTCTTAATAGGTGCACTTTCGTAATGTTTCTAAAGTATGGATGTGACTCAGTTTTGCACTACTACTAGGAGTTTGTATGGAAATGCGACTAAGCCTTTTGCTCCTTGTTTGCTGTTACGTCGTAtattagggttgtcatgatactgggaTTCAATactaatcgatactgaaattttaaaaacgtccatttcttGCTAACATTTGAGCTCTGTTAAGTACATTCTTAAAcatcgctgatttgccattgtgtccacgtgctcaacagaaatgactgattgGTTGTGAAGGTCATTTGTCTGCAGATCACTCGtttgtcagcttatagacaaaccagctgatcgacgtgactttgaaacactccagtgtccctgtatctgtggttacacttaaacagcggtgagttcggtgagcTGATGGCCTTCACGGCCACAGTCATATCTGTTTActtgaacacgtgaacacaatggcaaatcagcgctgtttaagaatgtgTTCAACATCGCTCAAATGTTCGCAGTAAATGGACGTTTTCAGTAAAATTTCAGCATCAATTGacatcgaattccagtatcggaTTCCAGTGTACCCAATCGTATAAGGGGTCATTCTTTTTATGTTGGATATTTTCAACTTTCTTTGGCTTTTCCTAAAGTGtcatttctgtcattaattacccTCATGTCGTTCATAACCTTTGCTCATCTTCAGAGCAAAAATTACGATATTTTAAATCTGAGAGTTTTTTGACCATTCATAAAAACAGGGTTCCCATAATTTCATGAGCAGCAGTTTCAGGGATCTTTTTAAAGCACCActtattttaaatcaagcacctttgtAATTCATACCCTCATATATGTAGCAAAATGAAAGTCcttactgtacttaacatttcacttgcacttaatatttacactaaaaagtcattttcaaatgtttttaatattttaaatattccaTATTCAAAGAACTTTTATAAAATTGGTTAAATTAAGGAATTGTAAAATTCAAATGCGGTTTCTGAAATATGAatcaaatgtgcattatttgtcagtgttattgtgcAAGAtttatgtgtaagatttttattgAAGATTTTCTCACTTTTTTCATTCTGATTTTGACAATTAagtacaattgttgaaataaaaccatatacagattttatttcaaatttatttcaagcactttcaaggatctactgtatgtttgtttttaagcacTAAGTAGTCCAtgtgtctgaaattcaagtacttttaagtactttcaacaaccatgtaaatagcaagGGTCAAGAAACCCAGAGTCCAGATCAGGAatcaaaaacatcctcaaaaacATTAGCAGTGGTGCAACTGTATTGTTTAATTAGGAatattttttatgcaaaataaatcaACGAATAACAACAAATAA
>TCONS_00017785
AATCCTCAGTAATGCAGTGTTGGCGTCTCTGTTTTCTACCCAGGTGGATTTGCCTTTCCTTGTGGAGCAGATTTCCAGCATGACCCGGAGAGCGTTCCTGCAGATGTTGAAACGCGAGCAGCTGACCCCAGAACAGCTGGAGTATGTTCAAGATGTAAGACGGCGGAGTAAGAATCGCGTGGCTGCGCAGCGCTGTCGCAAGAGGAAGTTAGACTGCATTTACCGTCTGGAAGGAGACATCAAGAAACtgAAATGCGAAAGGGAGAAACTGCTTCAAGACCACAACCAGCTGAAGCTCAGCATGGAGGACTTGCGTCAGAAGCTGTCAGGTCTGTGTCAGAGTCTCAGCCTTGACTCTTCACCGCAGTCCGAGCAACTGCAAGCACTGGTCAGGTACGTCTCCTCCGACTGTCCTACATCCATCCTCCTCACCCCCATGGCCTCCCCGAGCCTGGCTGGCCCAGAGCGGGACGCCCAAGCAAACGCCTCCCTGGATGCCTTTCTGGCAGAAACATGTCCTGAAGGAGACACCGTAGCACTCAGGTCTCCCTCTGCCTTCCTGGAAGAGCACGATCAGAGCACTGTTACAGATCCTGCTCTATGACGTACAAACAGATCAAAGCAGCCTGAGATTGGTCTGGGATTGGTCGTTACTCAGGAGCTTACCTTTCTGCTGCCGCCAGTTACACTTTTATGAGCATGACTTTCTTAATAGGTGCACTTTCGTAATGTTTCTAAAGTATGGATGTGACTCAGTTTTGCACTACTACTAGGAGTTTGTATGGAAATGCGACTAAGCCTTTTGCTCCTTGTTTGCTGTTACGTCGTAtattagggttgtcatgatactgggaTTCAATactaatcgatactgaaattttaaaaacgtccatttcttGCTAACATTTGAGCTCTGTTAAGTACATTCTTAAAcatcgctgatttgccattgtgtccacgtgctcaacagaaatgactgattgGTTGTGAAGGTCATTTGTCTGCAGATCACTCGtttgtcagcttatagacaaaccagctgatcgacgtgactttgaaacactccagtgtccctgtatctgtggttacacttaaacagcggtgagttcggtgagcTGATGGCCTTCACGGCCACAGTCATATCTGTTTActtgaacacgtgaacacaatggcaaatcagcgctgtttaagaatgtgTTCAACATCGCTCAAATGTTCGCAGTAAATGGACGTTTTCAGTAAAATTTCAGCATCAATTGacatcgaattccagtatcggaTTCCAGTGTACCCAATCGTATAAGGGGTCATTCTTTTTATGTTGGATATTTTCAACTTTCTTTGGCTTTTCCTAAAGTGtcatttctgtcattaattacccTCATGTCGTTCATAACCTTTGCTCATCTTCAGAGCAAAAATTACGATATTTTAAATCTGAGAGTTTTTTGACCATTCATAAAAACAGGGTTCCCATAATTTCATGAGCAGCAGTTTCAGGGATCTTTTTAAAGCACCActtattttaaatcaagcacctttgtAATTCATACCCTCATATATGTAGCAAAATGAAAGTCcttactgtacttaacatttcacttgcacttaatatttacactaaaaagtcattttcaaatgtttttaatattttaaatattccaTATTCAAAGAACTTTTATAAAATTGGTTAAATTAAGGAATTGTAAAATTCAAATGCGGTTTCTGAAATATGAatcaaatgtgcattatttgtcagtgttattgtgcAAGAtttatgtgtaagatttttattgAAGATTTTCTCACTTTTTTCATTCTGATTTTGACAATTAagtacaattgttgaaataaaaccatatacagattttatttcaaatttatttcaagcactttcaaggatctactgtatgtttgtttttaagcacTAAGTAGTCCAtgtgtctgaaattcaagtacttttaagtactttcaacaaccatgtaaatagcaagGGTCAAGAAACCCAGAGTCCAGATCAGGAatcaaaaacatcctcaaaaacATTAGCAGTGGTGCAACTGTATTGTTTAATTAGGAatattttttatgcaaaataaatcaACG
>TCONS_00017786
GGACAAAGCTGGAATTTTGACGGCTTCTGATGTCCAGTGATATGTCAGCTAAAGCCCTGCGTCATGTCTGTGGATGGCCCCCGGACCTCTGTTTTCACCTTCCAGTCCGCTGTTCACAGCCATCATGTTCTGCGCTCGCTGGAGGAGCTCAGACAGAAAGAGCTCTTGTGTGATGTGACGGTTGAAGTGGAGCGCAGGAGCTTTCGAGCACACTCTTCTGTGCTGGCTTCCTGCAGCCACTATTTTTACACCAGACTGACAAACCACAGCCAAGCAAACCCCACTGTCAGCTTGCCGGATGAGtctatgcaggttctgttcactaaagtagacatcattggCATCCGCGTCTCAGGCCCGGTTCTAGCCAACCACAGAAGGGTGGGCTGACATAAATCCCAGGTCACGGTGGAAGGATTTGAGCCTCTTCTGCAGTTCGCCTACACTGCGAAACTTCACTTCACAAAAGAAAACATCCTGGAGATCCAAAGGTGTGCCCGAGTTCTTGGATTTCAAAACCTTGATGAAGCCTGCT
>TCONS_00017787
CTTTCAGACGCAAACGCAGTACGTGCTGTGCGTGCTATGACGCGCACTCTCGCTGCAGCACTGCACAGTCACATGACAGGCGTGTAGACATTATGGAGCCTTTTCTCTGTCAAACTTTAATCCGATTTAACTTTTAGACTGCAAAAGCGATGGACAAAGCTGGAATTTTGACGGCTTCTGATGTCCAGTGATATGTCAGCTAAAGCCCTGCGTCATGTCTGTGGATGGCCCCCGGACCTCTGTTTTCACCTTCCAGTCCGCTGTTCACAGCCATCATGTTCTGCGCTCGCTGGAGGAGCTCAGACAGAAAGAGCTCTTGTGTGATGTGACGGTTGAAGTGGAGCGCAGGAGCTTTCGAGCACACTCTTCTGTGCTGGCTTCCTGCAGCCACTATTTTTACACCAGACTGACAAACCACAGCCAAGCAAACCCCACTGTCAGCTTGCCGGATGAGtctatgcaggttctgttcactaaagtagacatcattggCATCCGCGTCTCAGGCCCGGTTCTAGCCAACCACAGAAGGGTGGGCTGACATAAATCCCAGGTGGGCAGTTTTTTCGGGGTGGGGTTAGGAGATGGATTAGcgtaaatattaatgtaataatgtttATGCTTTGAGTTGCATATTATATTAAGTCAAAAGAAGCACAAATATGGATTCAATGAAGGTTTATGTTAAATCCAGTCAACATTCAGAATGTCCACAAAgtcaag

Function

symbol description
bach1a Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in nucleus. Is expressed in head. Orthologous to human BACH1 (BTB domain and CNC homolog 1).

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060421-7601 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in nucleus. Is expressed in head. Orthologous to human BACH1 (BTB domain and CNC homolog 1).

Ensembl:

ensembl_id ENSDARG00000062553

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00017784 False 3762 mRNA 0.45 5 8170884 8191992
TCONS_00017785 False 2106 mRNA 0.41 2 8170899 8177919
TCONS_00017786 False 535 mRNA 0.52 4 8186823 8191841
TCONS_00017787 True 723 mRNA 0.47 3 8189108 8191992

Neighbor

gene id symbol gene type direction distance location
XLOC_009019 gbe1b coding downstream 572342 7384520 ~ 7598542 (-)
XLOC_009018 SLC7A1 coding downstream 833347 7299756 ~ 7337537 (-)
XLOC_009017 NA coding downstream 1105571 7064468 ~ 7065313 (-)
XLOC_009016 CR396585.1 coding downstream 1136162 7032097 ~ 7034722 (-)
XLOC_009015 CR396585.2 coding downstream 1161946 7008822 ~ 7008938 (-)
XLOC_009021 tnfrsf19 coding upstream 43539 8235531 ~ 8309217 (-)
XLOC_009022 si:ch211-113p18.3 coding upstream 122940 8314932 ~ 8319988 (-)
XLOC_009023 NA coding upstream 158037 8350029 ~ 8394601 (-)
XLOC_009024 npas1 coding upstream 232719 8424711 ~ 8517555 (-)
XLOC_009025 NA coding upstream 407599 8599591 ~ 8602094 (-)
XLOC_009014 NA non-coding downstream 1193963 6968381 ~ 6976921 (-)
XLOC_009008 NA non-coding downstream 2268902 5898410 ~ 5901982 (-)
XLOC_009028 CR847977.1 non-coding upstream 795651 8987643 ~ 8987759 (-)
XLOC_009031 NA non-coding upstream 997161 9189153 ~ 9191277 (-)
XLOC_009039 AL807754.1 non-coding upstream 1994062 10186054 ~ 10186169 (-)

Expression


Co-expression Network