XLOC_009021 (tnfrsf19)


Basic Information

Item Value
gene id XLOC_009021
gene name tnfrsf19
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 8235531 ~ 8309217 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00017788
cacatacacactcacacactcactcgccGCTTTTAGGAGCTCGCAGGAGgacttttctctttctctttctcgtATCGGAGTGTCTGGCATTTGGGATTTACTCATGGAGTGAGTGACCGGGGCTGTTTAAAGCGCCTTTGTCTCGGACTTGTCTGCAGCTTTGATGTTCTTGCAGATGGGAGATCAGATTACAGGAATCAGACCGCAGGCTTTCATTTGAGGAGCTGTTCATCCAGCGCGGGACCCGGACAGACTCTGGATCTTCAACCCTTACTGAGCGCAGATCACCGGAGACCGACACACCGTGTCAGAATGCCGCAGGCTCAGATCCTCTCCAGGTTTCCTCTTCAGAGGATACTCATCCTTCCACTGTGTGTTCTGTTTGCAGTGATGGCAGAGGAGAGAAGAGACTGCAGGGAACAGGAATACAAGGATAAGTTTGGGAGCTGTATTCCCTGCCGGCAGTGCGACGCTGGACAAGAGCTCTCCAAGGAATGTGGCTTTGGCTATGGGGAGGATGCCCAGTGTGTGCCCTGCAGAGCCAGTCGCTTCAAAGAGGACCGCAGCCTGCAGAAATGCAAGCCCTGTCTGGACTGCTCGCTGCTCAACCGCTTCCAGAAGGGGAACTGCTCCACTACAAACAACGCCGTGTGTGGAGACTGTCTGCCCGGGTTTTACAGAAAGACAAAGTTACGTGGATTTCAGGATATGGAGTGTATCCCGTGTGGAGATCCACCACCACCATATGAAACTCACTgtATGGGCCGGGTGAATCTGGTGCCTCTGCCGTCGACAGTGAGCAGTCCTCGAGACATGGCTCTGGCCGCTGTGATCTGCAGTGCTCTGGCCACTGTCCTCCTGGCGCTCTTCATCCTCTGTGTGATCTACTGTAAGAGACAGCTGCTGGAGAAGAAACCAGTATCCATGAGGGCTCATGAGGGCCCGTTCCTGGGCTCGGAGTTGTCTTGTTTGGACCGGAGAGTGCTGGAGTTGTCCCAGAGACCCTGCTGTCACTGCACTCATGGATCAGAGCAGACGTGTGGTGGCGTTCAGCTGGTGTCGTCTGTGTGTTGTGAGGATGTCTGGAGTCAAAACAGAAGACGAGATGCTCCAGCCTTTCACTCACACTGCAGAATCTCTGACAATGGCAGGCTGACGAACGAGTCGGTGGGCAGTCAGACTGATATGGCCTGTGCTCCTGATGAAGTCTGGCCGCTCGTTCAGTCCAGAAGAACCACAGACAGTCTCCAGACCAACCAGAGGTGCTCCTCATGTGAAGAGGATGAGGAAGAAGTGCAGATCTCAGATCAGCGAACTGCAGAGGAGCCTGAGGATGCCTCACACAAACCACTAATACAGCAGACCACTGACACTGAAGGATGAGCTGCTTTAATCTCAGCGCCTGTTGTTCTCGGAGAGCCTTTCTGACGGTGGAAGAAGCAAAAGGAAGATCCAACCTCAGATTAAAGCAGGCCACACACACTGAAGACAACGGCTGACGAAAGACACTTTATTAACGTCTAAACAAAACCACACTCCACGTTTAGCACTGACTGCTTATGCAGTCAACCTGAATGGATTCTGCTATAGATCAAACTGCGCCTAtatatgtatctgtgtgtgtggtcagttgTAAAAGACTGGGTTTTCATCTAATGATTCAAActttgtttttcaaaattgtgaGCTTACAGTTGCAGTtctgactttttcttttttcttataaaggctcgtacacactgGGAAGCTTTCGCTCATGTTTATCGTCAACGTTTTTCTGGATTGAAAGCCAGGTGATTTTCATTGCTGTTAAGCAGAGTGAACAGGCATAATCACCCCCTGACATTAGATGGCAGTGAAACAGTccatctgtgtcgttataatggcgtcgacaaacttgtgACTCTTTTTGTTCCGACACAATGCAAATAGCAGCTCCACATTCATCTTGCCTCGGTGCATCATCGTCTACATTGAATGAAAGTGAAGCTGGAATCGTTTCCGTTTTGTGCTTGAGCACCTCCAAGTGGTGTTCCAAGTGGCATGTAAACAAAGGTGCCAATTGTTTTAGACGTGGccgtcaaaacaaacaaacatgaggtatttttttattaaaaatgacgATTTTATGCCTGGCCTTTTGCACATTGGTACACACGTTCACATTTGCTCCCTTTGTTTAGTCATGCAGTGTTAAACCAAAAATGCATCGCAATTTGAACGGACCTTAAtgataaatgatttaatttacttagaattattagccccccccttgacatttttttattttttattatatttcccaaatggtgtttaacagagcaagaaaaatttcacagtatgtctgataatattttctcttctggagaaagtcttatttgttttattttggctagaataagagcatatttaaatttttttataaaccatttttaggtaaaaaattattagccccttatataaagctatattttttcgatagtctacagaacaaaccatcgttatacatcaacttgcctaattaccctaacctggggTGCGtgtcccaaaaccatcgttagccaactaaggttgcaagttctgtTATTACACGCATAGTTTATTGATTAACCGTTTCCCAAATAcgtcgctccaacgaacattcgcaaagtgcgtcgcaaacttgagcactcgcaactacacctctggagctgtagttagaaacatagttactgaatgtgttctattcccacttatcccccctatacCCTATTCATTTTGAACATTcaaacattcaaagttggaattttaaattaaaaaagcattaaggtcatctctcttaggtgtaatttgcttccaAACTATTTGGGGGGTTAATATTttagggggcctaataattcggacttaaactgtatatgcaaatttaaatgacagaaaacaaTTCTAACAATAGTCAGAATAGTTAGGTGTAAACCTAAATTTGAAGAATAAACATTAGAATTGCTCAAAATAAAGTCTGAATTGTGCTAAATAGTTGGATTGGGATGAAAACCTAAACAATTTCAGTTGTTAGAAATAAAAGTTGCAATTATgaaataaaagaagaagaaacgAAATGAGCAGATTTGAGAAATCAAGTTGTGTGTATGTTCACCAGCCTGTTGAATTGTAGATATTGTATCATAGGAAATAGAAGgacaatatttttataatgtagatACTCATCCTGTGCCTTCAGTCTCGCTGTATGGTCTTTTCTTATAGAAATCGACTCATCAAATGTTTTCAATAAAGTTTTACAAACCTTA
>TCONS_00017789
ctcacacactcactcgccGCTTTTAGGAGCTCGCAGGAGgacttttctctttctctttctcgtATCGGAGTGTCTGGCATTTGGGATTTACTCATGGAGTGAGTGACCGGGGCTGTTTAAAGCGCCTTTGTCTCGGACTTGTCTGCAGCTTTGATGTTCTTGCAGATGGGAGATCAGATTACAGGAATCAGACCGCAGGCTTTCATTTGAGGAGCTGTTCATCCAGCGCGGGACCCGGACAGACTCTGGATCTTCAACCCTTACTGAGCGCAGATCACCGGAGACCGACACACCGTTTGGAGGGATAATGGCAAGCAGTGTCCTCCATTAATCATTCATCAAAGGATTTGTGCTTTCACAGTGTCAGAATGCCGCAGGCTCAGATCCTCTCCAGGTTTCCTCTTCAGAGGATACTCATCCTTCCACTGTGTGTTCTGTTTGCAGTGATGGCAGAGGAGAGAAGAGACTGCAGGGAACAGGAATACAAGGATAAGTTTGGGAGCTGTATTCCCTGCCGGCAGTGCGACGCTGGACAAGAGCTCTCCAAGGAATGTGGCTTTGGCTATGGGGAGGATGCCCAGTGTGTGCCCTGCAGAGCCAGTCGCTTCAAAGAGGACCGCAGCCTGCAGAAATGCAAGCCCTGTCTGGACTGCTCGCTGCTCAACCGCTTCCAGAAGGGGAACTGCTCCACTACAAACAACGCCGTGTGTGGAGACTGTCTGCCCGG

Function

symbol description
tnfrsf19 Predicted to enable signaling receptor activity. Acts upstream of or within establishment of endothelial blood-brain barrier; posterior lateral line neuromast deposition; and sprouting angiogenesis. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Is expressed in otic vesicle; posterior lateral line primordium; and tectal ventricle. Orthologous to human TNFRSF19 (TNF receptor superfamily member 19).

GO:

id name namespace
GO:0002040 sprouting angiogenesis biological_process
GO:0046330 positive regulation of JNK cascade biological_process
GO:0043123 positive regulation of I-kappaB kinase/NF-kappaB signaling biological_process
GO:0014045 establishment of endothelial blood-brain barrier biological_process
GO:0048916 posterior lateral line development biological_process
GO:0048922 posterior lateral line neuromast deposition biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0038023 signaling receptor activity molecular_function
GO:0005515 protein binding molecular_function

KEGG:

id description
ko04060 Cytokine-cytokine receptor interaction
ko04050 Cytokine receptors

ZFIN:

id description
ZDB-GENE-030131-6760 Predicted to enable signaling receptor activity. Acts upstream of or within establishment of endothelial blood-brain barrier; posterior lateral line neuromast deposition; and sprouting angiogenesis. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Is expressed in otic vesicle; posterior lateral line primordium; and tectal ventricle. Orthologous to human TNFRSF19 (TNF receptor superfamily member 19).

Ensembl:

ensembl_id ENSDARG00000041869

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00017788 False 3287 mRNA 0.44 10 8235531 8309217
TCONS_00017789 True 727 mRNA 0.53 4 8277999 8309207

Neighbor

gene id symbol gene type direction distance location
XLOC_009020 bach1a coding downstream 43539 8170884 ~ 8191992 (-)
XLOC_009019 gbe1b coding downstream 636989 7384520 ~ 7598542 (-)
XLOC_009018 SLC7A1 coding downstream 897994 7299756 ~ 7337537 (-)
XLOC_009017 NA coding downstream 1170218 7064468 ~ 7065313 (-)
XLOC_009016 CR396585.1 coding downstream 1200809 7032097 ~ 7034722 (-)
XLOC_009022 si:ch211-113p18.3 coding upstream 5715 8314932 ~ 8319988 (-)
XLOC_009023 NA coding upstream 40812 8350029 ~ 8394601 (-)
XLOC_009024 npas1 coding upstream 115494 8424711 ~ 8517555 (-)
XLOC_009025 NA coding upstream 290374 8599591 ~ 8602094 (-)
XLOC_009026 arhgap35a coding upstream 295260 8604477 ~ 8763106 (-)
XLOC_009015 CR396585.2 non-coding downstream 1226593 7008822 ~ 7008938 (-)
XLOC_009014 NA non-coding downstream 1258610 6968381 ~ 6976921 (-)
XLOC_009008 NA non-coding downstream 2333549 5898410 ~ 5901982 (-)
XLOC_009028 CR847977.1 non-coding upstream 678426 8987643 ~ 8987759 (-)
XLOC_009031 NA non-coding upstream 879936 9189153 ~ 9191277 (-)
XLOC_009039 AL807754.1 non-coding upstream 1876837 10186054 ~ 10186169 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000308_01699956_01730072 TNFRSF19 coding CI01000308 null 1699956 ~ 1730072 (-)