XLOC_009024 (npas1)


Basic Information

Item Value
gene id XLOC_009024
gene name npas1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 8424711 ~ 8517555 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00017791
ctcttttactctGTGTGCTAATCAGCATTTGAAAGGCAGCTTTGACAGTGAGAAAGAAAAGTGAGGGCAGTGGGGAGGAGGGAGTGTAAACGAGAAAGAAAcgagagagtgaaagagagagagagaggtagggGCCGTACAagcatttcttttatatttactaGCGATTgagggaagagagagagagcgagggaCCGAGAGAGGGAGCGGGTGAAGTGACGACCGGTGCGTGCAGCTTTCCCAAGaggaaatgaaaagaaaagaacgAGGAAAGAGAGAGAGCCAACGCAGGGAGCACGCCAGAGAAGGAAACAGACTCGCATCCTCCAACTCCAGTCATATCTGAGACGATCCCGCTTGGAAAGTGAGGGAGGAGAGAGCCGCCGCTGCTgccgctacacacacacacacgcacacactcttgCGGCTGCAGACCGCTGTGTGTTCGCCTGCTCTTTTGTGCCAGCAGCTGGGATTGTTCTTGGCCCCGTCTGACCCCCTTGTCACCCCccgtgtgagagtgtgtgtttgcatgtgagcGCGAGGGGTCCTGGAACGTGGACTGAGTCGAAAGGGGAGGGTCACGGTTCGGGGTTGGGGGTTCTGATCGGGACAGGTCCAAGACTTCTAAGGAAGAGGAGGAGGGAAACATCTGCCACCCAAACAGCTGCTCGGAGGTGGACATGCACATCAGGTGAGTCCGTTTACATCAGCAAAACACAACTTCTTCCTGTTCTGGTCTCTATGAACACATGCCGGACTGTCACATCTGACAGCTTCAACTTTTAAGATATGAGCTTCTTCCCCCTTAAACTTGTTGATGGCTTTGCGCCTGCATGGGGGGCTCGCCTTCCTGGGAAAGTTTTTGGGAAAGACACTTTGCTCATAAGTGCACTTGTCTTTCCGCCTCAATGACGAAGGTATTGGGAGCGCAGGGGAGGAATGCTGGGGTTAATTGTGCGGACCGCCTCGGCTCGCTTTCAAACATCATCTCTCACTTAATTAGTGGATTTTACAAGATTAGTGTGCTTTGCATTGACGCTGTGTTCTGGGGAAGGTAGTGAATGGTAGGCGGCCGTCTTCTGATATCTGATGTCTTTGGATTAAACGGCTTCTTCTTAATGACTGGATTTGTATTAGGAATGAGCTCTTCTCTTAGGGGTCTCGGACTGACATAGCCTCGGCCAATCACTGCCTGAGTTAGAGGTGGCGGCCCATCGGGGTCGTGATGGCGGCCATGCCGTTCGTCAGCGAGGGCAAGTGTGTGTCCGTCGAGTGGGACTTTCTTCAGGGGCTTCTCGCCAAACCACCCACCTTACCCtgCTTGCAGAACTTGAGGAAGGAGAAGTCCCGCAATGCAGCTCGTTCTCGGCGAGGCAAAGAGAACTTTGAGTTCTTCGAGCTGGCCAAGATGCTCCCCCTCCCTGGGGCAATAACCAGCCAGCTGGACAAGGCCTCCATAATCCGCCTCACCATCAGCTACCTGCACATGAGACACTTCGCCAGCCAGGGAGACCCGCCCTGGAGCCCCCTAATGGAAGGAGAGAACAACTGCAGCAAGGtgcgaAGAACAAGTCATTCATTGGTCACTGACATATTCGAACAGCATTTGGGAGCTCATCTACTGCAGTCTCTGGATGGATTTGTGTTTGTGGTCAGTCAAGAAGGCAGATTTCTTTACATCTCAGAGACCGTCTCCATCTACCTTGGCCTTTCACAGGTGGAGTTGACTGGCAGCAGTGTGTTCGATTACATCCACCCTGCGGATCATGTGGAGATGGCGGAGCGTCTGGGCATCAGGCCACACCTGCGGGCAGAGGCCGGCTGTCAGACGTCCCATGAAAGTGCTTCAAGCTCAGCATCCACGTCCTCGCTGGCTGGCACTCCAGAACCAGCACCACACAGTCCTTGTTCTCCAGTCAGGGAGTTGTCGGAACGTGGCTTCTTCATCCGGATGAAATCCACACTCACCAAACGTGGCCTCCACGTTAAATCCTCGGGCTATAAAGTGATTCATGTGACAGGTCGGATTCGATGTCGGCCAGCACTGGTGCCCAGCTCCTCCCGAGCCTTACATCGGCCAATGGGATTGGTCGCTCTGGCTCACACACTTCCACCCTCCACGCTCAATGAGGTGCGCATGGAAAGCCACATGTTTGTTTTCAGAGTCAACATGGATCTGCAGGTCACCTACTGTGAAAACAGGATTTCAGAGTATATGGACCTGAGCCCAGCTGAAGTGGTTGGACATACCTGCTATCACTTCATTCATGCTGAAGACCTGGACACCGTCAGGCAGAGCCATGAAGACTTGCTGCGGAAAGGGCAGGTTGTGACCGGATATTACCGTTGGCTGCAGAGGAGAGGAGGTTATCTGTGGATTCAGTCCTGCGCCACCGTTTCTATTAACCACAAAGCACCCCATGAGCGTAATGTCATCTGGGTCAACTATGTGCTCAGTCGGCCAGAGCTGGCAGACATGCCTCTGGACTTATTACAACTTCCAGAAAGCCTGAGGGCAGAGCGGCTTCAAGCAAGCTCCTCCCCGCGCGACATGTCTCCAAAGACACAAGGTATGCTCTTAGCCCCATACACAATTATACATCCACACATCGATAATAAGTTACTACGCTGAGTTGTCTCTTTTTCTAGGCTCTACTGGGACGCAACCATTGAAAAGCAGGTCTGAAACAGACCTCAAAGGAAAGGAAGCCTTCTCACACAATACTTCCAGTCAATCAGAGAACACTAGGAAAAGATTGCACCAGACTGACTCTGAGAGTGGGCCACCCGAGGCAAGGAGACGGATGGAGGTGTTTCGTCAGAGAGAGGACAGCCCGTGTACCTCCTCGGACCAAGCCAGTGACAGCGAGGTGGAAGAGGATGATGAGAGGGAGAGCGAGTGGGACCACAATCCCTCCAGCAAACGGGTGAAGAATGAAGAGGGGGCTTCAAAACAAGGCAACGGGGCTAACGGAGCAGGTAAGATCCACAATGGCCGTGCTGTGATCCAGCATCTTAAGAGTGTGGTGACCAGTTCCGGATCAAACATTAAGACTGAACAAGAAGTGTTGGGCACAACTGTAGGTGCAGGTTCTGGGAGGCGATGGAGTCAACCTCTGCTTGGCAATGGCGGACCTAATGGCAGCAGTCCACCTTCCCAGCCTCCAAATTCCACCCCGACAGAAGCTCCACCCAAGGGTCTATTCAGCCCACCCTCCCCAACCCTGTCTCCACCCATCCCAGCATCATCCCTACCCAGAGATGACCGGTCCATTCATGGAGGACGTGCTTCCGACTTTGAGCTACTGCAGAGACTAACTGCAAGTGGGGCTGCAGGACGTGTTCTTTTTCATCCCCTGGCTCTCGGCCCGCAGGGACCTCAGAGTCTCTACGCTCCAAGTACGATTCGCTACGCCCCACCTGAGATGCCCACAATTCACACTGAAGGTCACCGCTCAGACCATGGAGCCAAAACTCCCACTTTCTTTCCTCACCTGCAAAGGATCACATCTCTGCCTCCCTTCAGTGGCTTTTCTCCAGCCGAACCCACCTTTCCTCCAACTCTGCCCTTCTGTATGAACGGTCTGAGGGGGGCCGCAGGGACAGATGAGGATTGAGAAAGACAGAAAATTATGTCAAGGAGAGGTGGGAGGGGTAGCAAAGGACAGGGCATAATGTTGAGAGAGGAACTACAGAAGTACTTGAGGTTTGTAAGTCTTCCCAAACTCCTCTCCAGACCTTTCTCTGGTAATTTGTTATTGTGTCTTCCTCTTTTTGGAAAAACAGTCAAAGCCATACTGAAACATATGAAGGAAATCATGCAACTTACAGAAAGGAGTCAGAATTGAGGCCAGAATCACTGGGACCATACAGGCTGTCAATGGGATGGAGAACAGTGGACATTGTCCTATGCCCTTTGATGAGGGGTTGTACATGGCGAGGTTCTACCTGTCCCTCAGAGAGATGGGCCTACCTATAGAAGTCCCCTTTAATATAAGGAACCACACAGGAATATGCAAGAATGGACAAAAAGCAGCATGGCGGCAATTGCCAAATAAGACATCCCTAAGGAAACAATAAATAAGCACAGTCCATGTCCCTGGCTGACAGAGGGATCGAACTGAAAATTAAACTTAGAAAAGTGTagacttttcatttttgtaaaaaaaaaaaagaagaagaagaattgtctGTAAACGTCTAAAAAAATTcacttgaaaaataattaattcaaggTCATAGCCATATACAGCATAGAGAACACTGAGATGAAAGACTTCATACGTGCAAATGCTCCaaaagaattttctttttttcataagTCATGAGCAAATATCATGGACTAATATTCCTATAAGAAATTTGTGGGATTTTTTGGGTgggattggggggggggggggtgaagtGTATCTATTTGTCATGTATCATGTCCAAGCACTTATAGTATATTGTCACATACACATAGCACTTCATCCATGGCCAGAATTTCAAGGTGTCCGATTGTGTAAAACCACAAGAATTACATTTACAATAGATGCGGCAGAAATATGGCAATAATTCTGGCAATCTGTAATATTTTCTTCAAAAAATGCCTGTTGAATACCAGAACCTGTCATGAACATATCCAGGTAAATTTACTCAAATTCAAATTCCACTCAAATAAAGAAAATGCTTCATCACCATTTTCACAGACAAGACTGTTTATAAAACAGTCTAACCAAGCTGAAAACTACTCAACATACCTCTACATCTGACCGCACTCTACATCTCTACATACCTCTACATCTTCATCTCATCTCTACCTGTACATCTGATTAATGCAATTATCCTAGTAGATCACCCTGATGTGtaacacttaaaaatataaaataaaaataaaataataggctTATCTTGAGATTCATCCCACTTTTTAGGATCAAGATGCCTGTTTTAAAGCAAACTGATTTGTCTAGCTGAATTGACACTGTTCCATTAACAGGAAAGCTGAGGTCTGATTTTAGCCCTGTCTCGAATGTATCTTTACAACAttgtcaactaaaaaaaaaaattattgctttTTAGCTGATgtctgtttcagaaaggaggttcaGTAAAACCTTTATATATTAACTCTTAAATGAGG
>TCONS_00017792
agagagagcgagggaCCGAGAGAGGGAGCGGGTGAAGTGACGACCGGTGCGTGCAGCTTTCCCAAGaggaaatgaaaagaaaagaacgAGGAAAGAGAGAGAGCCAACGCAGGGAGCACGCCAGAGAAGGAAACAGACTCGCATCCTCCAACTCCAGTCATATCTGAGACGATCCCGCTTGGAAAGTGAGGGAGGAGAGAGCCGCCGCTGCTgccgctacacacacacacacgcacacactcttgCGGCTGCAGACCGCTGTGTGTTCGCCTGCTCTTTTGTGCCAGCAGCTGGGATTGTTCTTGGCCCCGTCTGACCCCCTTGTCACCCCccgtgtgagagtgtgtgtttgcatgtgagcGCGAGGGGTCCTGGAACGTGGACTGAGTCGAAAGGGGAGGGTCACGGTTCGGGGTTGGGGGTTCTGATCGGGACAGGTCCAAGACTTCTAAGGAAGAGGAGGAGGGAAACATCTGCCACCCAAACAGCTGCTCGGAGGTGGACATGCACATCAGCTCTTCTCTTAGGGGTCTCGGACTGACATAGCCTCGGCCAATCACTGCCTGAGTTAGAGGTGGCGGCCCATCGGGGTCGTGATGGCGGCCATGCCGTTCGTCAGCGAGGGCAAGTGTGTGTCCGTCGAGTGGGACTTTCTTCAGGGGCTTCTCGCCAAACCACCCACCTTACCCtgCTTGCAGAACTTGAGGAAGGAGAAGTCCCGCAATGCAGCTCGTTCTCGGCGAGGCAAAGAGAACTTTGAGTTCTTCGAGCTGGCCAAGATGCTCCCCCTCCCTGGGGCAATAACCAGCCAGCTGGACAAGGCCTCCATAATCCGCCTCACCATCAGCTACCTGCACATGAGACACTTCGCCAGCCAGGGAGACCCGCCCTGGAGCCCCCTAATGGAAGGAGAGAACAACTGCAGCAAGGtgcgaAGAACAAGTCATTCATTGGTCACTGACATATTCGAACAGCATTTGGGAGCTCATCTACTGCAGTCTCTGGATGGATTTGTGTTTGTGGTCAGTCAAGAAGGCAGATTTCTTTACATCTCAGAGACCGTCTCCATCTACCTTGGCCTTTCACAGGTGGAGTTGACTGGCAGCAGTGTGTTCGATTACATCCACCCTGCGGATCATGTGGAGATGGCGGAGCGTCTGGGCATCAGGCCACACCTGCGGGCAGAGGCCGGCTGTCAGACGTCCCATGAAAGTGCTTCAAGCTCAGCATCCACGTCCTCGCTGGCTGGCACTCCAGAACCAGCACCACACAGTCCTTGTTCTCCAGTCAGGGAGTTGTCGGAACGTGGCTTCTTCATCCGGATGAAATCCACACTCACCAAACGTGGCCTCCACGTTAAATCCTCGGGCTATAAAGTGATTCATGTGACAGGTCGGATTCGATGTCGGCCAGCACTGGTGCCCAGCTCCTCCCGAGCCTTACATCGGCCAATGGGATTGGTCGCTCTGGCTCACACACTTCCACCCTCCACGCTCAATGAGGTGCGCATGGAAAGCCACATGTTTGTTTTCAGAGTCAACATGGATCTGCAGGTCACCTACTGTGAAAACAGGATTTCAGAGTATATGGACCTGAGCCCAGCTGAAGTGGTTGGACATACCTGCTATCACTTCATTCATGCTGAAGACCTGGACACCGTCAGGCAGAGCCATGAAGACTTGCTGCGGAAAGGGCAGGTTGTGACCGGATATTACCGTTGGCTGCAGAGGAGAGGAGGTTATCTGTGGATTCAGTCCTGCGCCACCGTTTCTATTAACCACAAAGCACCCCATGAGCGTAATGTCATCTGGGTCAACTATGTGCTCAGTCGGCCAGAGCTGGCAGACATGCCTCTGGACTTATTACAACTTCCAGAAAGCCTGAGGGCAGAGCGGCTTCAAGCAAGCTCCTCCCCGCGCGACATGTCTCCAAAGACACAAGGCTCTACTGGGACGCAACCATTGAAAAGCAGGTCTGAAACAGACCTCAAAGGAAAGGAAGCCTTCTCACACAATACTTCCAGTCAATCAGAGAACACTAGGAAAAGATTGCACCAGACTGACTCTGAGAGTGGGCCACCCGAGGCAAGGAGACGGATGGAGGTGTTTCGTCAGAGAGAGGACAGCCCGTGTACCTCCTCGGACCAAGCCAGTGACAGCGAGGTGGAAGAGGATGATGAGAGGGAGAGCGAGTGGGACCACAATCCCTCCAGCAAACGGGTGAAGAATGAAGAGGGGGCTTCAAAACAAGGCAACGGGGCTAACGGAGCAGGTAAGATCCACAATGGCCGTGCTGTGATCCAGCATCTTAAGAGTGTGGTGACCAGTTCCGGATCAAACATTAAGACTGAACAAGAAGTGTTGGGCACAACTGTAGGTGCAGGTTCTGGGAGGCGATGGAGTCAACCTCTGCTTGGCAATGGCGGACCTAATGGCAGCAGTCCACCTTCCCAGCCTCCAAATTCCACCCCGACAGAAGCTCCACCCAAGGGTCTATTCAGCCCACCCTCCCCAACCCTGTCTCCACCCATCCCAGCATCATCCCTACCCAGAGATGACCGGTCCATTCATGGAGGACGTGCTTCCGACTTTGAGCTACTGCAGAGACTAACTGCAAGTGGGGCTGCAGGACGTGTTCTTTTTCATCCCCTGGCTCTCGGCCCGCAGGGACCTCAGAGTCTCTACGCTCCAAGTACGATTCGCTACGCCCCACCTGAGATGCCCACAATTCACACTGAAGGTCACCGCTCAGACCATGGAGCCAAAACTCCCACTTTCTTTCCTCACCTGCAAAGGATCACATCTCTGCCTCCCTTCAGTGGCTTTTCTCCAGCCGAACCCACCTTTCCTCCAACTCTGCCCTTCTGTATGAACGGTCTGAGGGGGGCCGCAGGGACAGATGAGGATTGAGAAAGACAGAAAATTATGTCAAGGAGAGGTGGGAGGGGTAGCAAAGGACAGGGCATAATGTTGAGAGAGGAACTACAGAAGTACTTGAGGTTTGTAAGTCTTCCCAAACTCCTCTCCAGACCTTTCTCTGGTAATTTGTTATTGTGTCTTCCTCTTTTTGGAAAAACAGTCAAAGCCATACTGAAACATATGAAGGAAATCATGCAACTTACAGAAAGGAGTCAGAATTGAGGCCAGAATCACTGGGACCATACAGGCTGTCAATGGGATGGAGAACAGTGGACATTGTCCTATGCCCTTTGATGAGGGGTTGTACATGGCGAGGTTCTACCTGTCCCTCAGAGAGATGGGCCTACCTATAGAAGTCCCCTTTAATATAAGGAACCACACAGGAATATGCAAGAATGGACAAAAAGCAGCATGGCGGCAATTGCCAAATAAGACATCCCTAAGGAAACAATAAATAAGCACAGTCCATGTCCCTGGCTGACAGAGGGATCGAACTGAAAATTAAACTTAGAAAAGTGTagacttttcatttttgt

Function

symbol description
npas1 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Orthologous to human NPAS1 (neuronal PAS domain protein 1).

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:0046983 protein dimerization activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060503-934 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Orthologous to human NPAS1 (neuronal PAS domain protein 1).

Ensembl:

ensembl_id ENSDARG00000015876

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00017791 False 5128 mRNA 0.49 11 8424711 8517555
TCONS_00017792 True 3454 mRNA 0.53 12 8425674 8517376

Neighbor

gene id symbol gene type direction distance location
XLOC_009023 NA coding downstream 30110 8350029 ~ 8394601 (-)
XLOC_009022 si:ch211-113p18.3 coding downstream 104723 8314932 ~ 8319988 (-)
XLOC_009021 tnfrsf19 coding downstream 115494 8235531 ~ 8309217 (-)
XLOC_009020 bach1a coding downstream 232719 8170884 ~ 8191992 (-)
XLOC_009019 gbe1b coding downstream 826169 7384520 ~ 7598542 (-)
XLOC_009025 NA coding upstream 82036 8599591 ~ 8602094 (-)
XLOC_009026 arhgap35a coding upstream 86922 8604477 ~ 8763106 (-)
XLOC_009027 rab4b coding upstream 296200 8813755 ~ 8856785 (-)
XLOC_009028 CR847977.1 coding upstream 470088 8987643 ~ 8987759 (-)
XLOC_009029 rhoub coding upstream 473022 8990577 ~ 9002155 (-)
XLOC_009017 NA non-coding downstream 1359398 7064468 ~ 7065313 (-)
XLOC_009016 CR396585.1 non-coding downstream 1389989 7032097 ~ 7034722 (-)
XLOC_009015 CR396585.2 non-coding downstream 1415773 7008822 ~ 7008938 (-)
XLOC_009014 NA non-coding downstream 1447790 6968381 ~ 6976921 (-)
XLOC_009031 NA non-coding upstream 671598 9189153 ~ 9191277 (-)
XLOC_009039 AL807754.1 non-coding upstream 1668499 10186054 ~ 10186169 (-)
XLOC_009040 CT573316.3 non-coding upstream 2238655 10756210 ~ 10759101 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000154_01134763_01169402 NPAS1 coding CI01000154 null 1134763 ~ 1169416 (+)