XLOC_009032 (calm3a)


Basic Information

Item Value
gene id XLOC_009032
gene name calm3a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 9234052 ~ 9272328 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00017801
AATCTGCGGCTCactcactcacatgcacacacaaacacacagaggagCAGACCCTGCGTATATACGTCAACctttaaaacacaaaaagctTCTTTCTCCTGATTTTACTCACATTTATCAACCGGGCTTTGTTTAATAATGGCAGATCAGCTGACCGAGGAACAGATTGCTGAGTTTAAGGAGGCGTTCTCACTGTTCGACAAAGACGGCGATGGCACCATCACCACCAAGGAGCTGGGCACAGTGATGCGCTCATTGGGTCAGAACCCGACTGAAGCTGAGCTGCAGGACATGATCAACGAGGTCGACGCTGATGGCAATGGAACTATAGACTTTCCAGAGTTCCTAACCATGATGGCGAGGAAAATGAAGGACACGGACAGTGAAGAGGAAATCCGAGAAGCTTTCAGAGTCTTCGACAAGGATGGAAACGGCTACATCAGTGCAGCTGAGCTCCGTCACGTCATGACCAACCTGGGCGAGAAGTTGACGGATGAGGAAGTGGACGAGATGATCCGAGAGGCGGATATTGATGGAGACGGTCAGGTCAACTATGAAGAGTTTGTCCAAATGATGACTGCAAAGTGAAGAATTGTCTTATTCtgtatctctctttctctcttacaTTGCTTGTCCTACTAAGATCACTCtgtctttaaaaagaaaaaaaatctaaagtttaCTTCAGAGAGTTATTAGAATGTCAAATTCTCTGATctcttaccaaaaaaaaaaaaaacaaaaacaaacgtaTATTAAATTTTAGAAACAATTTGTGGAAAAATACTAGTAGAATCGTCCCAGCAGAAGTGAATGGACCAAGCATAACTGCATGAGCCCTTTTGGAGCAAACGTCTCCAGACCTGACAAACATTTTGAGGACAGAACTTTAGTCGCACACGAGTTGAAGTCCACGCAGCGTTTCAAACGCAGAGAACATCTTCTTTCATGAGTGTTCTTTCATCGCTCAAAAATAgagtacattaaaataattaacctaTAACCTTGATAATGCTAAAACATTGTGGTAAATAGTCCAGGGTCACTGTGCTGCCTTCAATAAAAAGTTAGCAAACACAATTGCGTGTGACCCCTGTGGTGAAGTCATGCTTTCGGGTATTGCCTTCTCCTTTTTAGGGCTCCAAACGGAACAAAAACCGGATGTTTCTGAAGACGTACATATTGTAAAAACCTGACGTCATACTCATACTCTGTAAAATGGCGACGTACGACTTAGAGAGTGTCTTTATGGGCTATAAGGCATGTACTTGGTTGCCAGTGGTTTCTGTTGGCTGGcttaaacctttattttaatgtgGTCTGATGACTTTAAACTTTGTGGGAGCGTCGAGATGCAAAGTGTGTACAGCAGAATGGAAACGTGACGGAATAGCATTACTGTATAAATACATAGTTGCATAGATAATCACAATGCGCTCAGTGTTATGCTTTCAAAATGTACCGTTCTCCAATATTAACGTTTGGTAAGCTTTGCATCGCCTATTGTTCTAGTTAGGTCTGTGACTTTTGTTTGATCCATGGTCTTGAAACGTGCCATAATTTCTCGTAAAGCATTAACTTTGTTGCAAGAGAACTTGTTGTCAATTAAGAAGTATGTTATCAATTTAtgaatatacacacaaatatctctatatctatatatatatatatttgcactttgGTGTAGATTATACATTAAACCACAGAAGAGGAACCTGCTGCTTCTGCTGCTTTTATGGCTCATTTGTCTCTTGCTCTCGTGGGTTTGTCACAATCTCGTCAAGTGCTTCGAATAATTTTCATTTGCGCTCTGCTTGCAAGATGACGATAAACGGTGGAACCCGTGGGTGATTTTCGAGGAGGCGAACAGACAACGTCTCCAATTATGTTGCTAGTAAGACTATGAAGGGCTTGTTATTGGTCTAATAATTGggttatttatttctctttttctaGCCCAACTGTATTACTCACATGGAAGAGCTTCACATTGCTTATCTTACTCTGATAATGGCGGTTTTGTGATGGCAGGGTTAGAAATTGAGCAGCCGGACGGAGAATACTAGACATGTGAAATCTGTATGGATAATATGTTAAATGTGTATCAGTGTTTtccaataaaatatatgtatatgtttatgcATA
>TCONS_00017802
ATGGCAGATCAGCTGACCGAGGAACAGATTGCTGAGTTTAAGGAGGCGTTCTCACTGTTCGACAAAGACGGCGATGGCACCATCACCACCAAGGAGCTGGGCACAGTGATGCGCTCATTGGGTCAGAACCCGACTGAAGCTGAGCTGCAGGACATGATCAACGAGGTCGACGCTGATGGCAATGGAACTATAGACTTTCCAGAGTTCCTAACCATGATGGCGAGGAAAATGAAGGACACGGACAGTGAAGAGGAAATCCGAGAAGCTTTCAGAGTCTTCGACAAGGATGGAAACGGCTACATCAGTGCAGCTGAGCTCCGTCACGTCATGACCAACCTGGGCGAGAAGTTGACGGATGAGGAAGTGGACGAGATGATCCGAGAGGCGGATATTGATGGAGACGGTCAGGTCAACTATGAAGAGTTTGTCCAAATGATGACTGCAAAGTGA

Function

symbol description
calm3a Predicted to enable calcium ion binding activity. Human ortholog(s) of this gene implicated in familial hypertrophic cardiomyopathy. Orthologous to human CALM3 (calmodulin 3).

GO:

id name namespace
GO:0019722 calcium-mediated signaling biological_process
GO:0005509 calcium ion binding molecular_function
GO:0046872 metal ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-5590 Predicted to enable calcium ion binding activity. Human ortholog(s) of this gene implicated in familial hypertrophic cardiomyopathy. Orthologous to human CALM3 (calmodulin 3).

Ensembl:

ensembl_id ENSDARG00000100825

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00017801 False 2145 mRNA 0.40 6 9234052 9272328
TCONS_00017802 True 450 mRNA 0.51 6 9235609 9257136

Neighbor

gene id symbol gene type direction distance location
XLOC_009031 NA coding downstream 42775 9189153 ~ 9191277 (-)
XLOC_009030 rtn2a coding downstream 202056 9010891 ~ 9031996 (-)
XLOC_009029 rhoub coding downstream 231897 8990577 ~ 9002155 (-)
XLOC_009028 CR847977.1 coding downstream 246293 8987643 ~ 8987759 (-)
XLOC_009027 rab4b coding downstream 377267 8813755 ~ 8856785 (-)
XLOC_009033 si:ch211-261a10.5 coding upstream 6664 9278992 ~ 9294929 (-)
XLOC_009034 trappc4 coding upstream 42849 9315177 ~ 9321970 (-)
XLOC_009035 sacs coding upstream 94773 9367101 ~ 9421481 (-)
XLOC_009036 gab2 coding upstream 172654 9444982 ~ 9593532 (-)
XLOC_009037 nars2 coding upstream 329309 9601637 ~ 9631592 (-)
XLOC_009025 NA non-coding downstream 631958 8599591 ~ 8602094 (-)
XLOC_009023 NA non-coding downstream 839451 8350029 ~ 8394601 (-)
XLOC_009017 NA non-coding downstream 2168739 7064468 ~ 7065313 (-)
XLOC_009039 AL807754.1 non-coding upstream 913726 10186054 ~ 10186169 (-)
XLOC_009040 CT573316.3 non-coding upstream 1483882 10756210 ~ 10759101 (-)
XLOC_009041 BX293559.2 non-coding upstream 1701389 10973717 ~ 10986106 (-)
XLOC_009042 BX293559.1 non-coding upstream 1825541 11097869 ~ 11099720 (-)
XLOC_009045 NA non-coding upstream 2142363 11414691 ~ 11423104 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00015367 calm1,LOC102293206,LOC102778633,LOC107396020 coding CM030132.1 CM030132.1 8479116 ~ 8481362 (-)