XLOC_009037 (nars2)


Basic Information

Item Value
gene id XLOC_009037
gene name nars2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 9601637 ~ 9631592 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00017810
AGGACAGCTGCATCTGGAGGTGATGGCAGGGATGTTttactggaatttgataccgcatggcgaacggaaagacatgcatgatcctttaagTGCCTTTTCAGCTGTGTACACATTTGGACCCACGTTCAGAGCAGAGAATTCTCAAAGCAGGAGGCACTTGGCTGAGTTTTATATGGTAGAGGCAGAGATCGCTTTCACAGAGTCACTAGATGACCTTATGAAGGTAATGGAGGACTTATTCAAGGCTGCCACAGAGCATGTGTTTTCAAATTGCACAGAGGATGTGGAGTTATTTCACAAACATGTGGCACCAGGACATCGGGAGCAAGTGGATCCCATGTTGAACAGAAAATTTAATGTTGGGGCTGTGATCTTCAGACTGAACATGAGAAGTTCCTTGTTAAGCACTGCGGAAACACCCCTGTGTTTGTTGTAAACTATCCCTACGAGTTAAAGCCATTCTATGCCAGAGATAACCAGGACCACCCCAGACATACAGCAGCTGCTGTAGACCTCTTGGTTCCTGGTGTCGGGGAGCTTTGTGGTGGATCTCTGAGAGAAGAGAGACTACATCTTTTAACCCAAAGACTATCACAGGCTGGATTGGAGGACACATATGCATGGTATCTACAGCTGAGAGAATTTGGCTCCGTACCTCATGGTGGTTTTGGGATGGGGTTTGAGAGGTacctgcaatgcattctgggactCAACAATATCAAAGATGCGATTCCATTTGCAAGGTTCTCGCACTCCTGCCAGCTTTGATGAAGtcttataaaatgaaaacaatgactg
>TCONS_00017811
ATTCGACTCAGGAAGCGCGTGGAGAGCAGGGTGAATGTCAAAACAGAGACAAACGAAACTAACTATCCGAGCTGTTATAGAAACGCAAGTTTTTAttctcatattttattttattatatccaaATTAACGTTAGTGGGTGTCAACGGCACAGGCATTCAAAAGCGGAAGAAGCAGAGATAAACATCATAATCTGGTTCACTCTCTACACTAGGCTGACAGCATGTCGCTCACATTACAGCGGATTCCTGCTTTCTCCTCGTCGTTATTCTGTCGGTGTAGCTCGAAATTTCTGGACCGACTCTGCAGTCGCATGATTTCCAAGAAAATGAGAGTATCTGATGCGCTTGCATGCAAAGAGACGGGCTCAGATGTTAGAATACAGGGCTGGGTTCGATCGGTCAGGCCACAGAAAGACAATCTCTTCTTACATTTGAATGATGGAAGTTCACTGCAACCACTACAGGTTGTTGCCAGCTCACAACTGAACACCAGAGACCTCACGTTTGGCTGTGCTGTCGACATTACCGGCACATTAGAGAAGAGCCCAAATAAGAGGCAAAACGTGGAGTTACAGGCTCAGAGTATTAAAGTGGTTGGAGAATGTAATCCGATGGACTTTCCTTTTAAGATCAAGGAGCGTCATCCTCTGGAGTATATCAGGCAGTTTCCTCACCTCAGATGCAGAACTAATGCCTTCAGCTCCATGCTCAGGATACGCAGTGAAGCTACAGCCGCAATCCAGTCATTCTTCAGGGATCACGGTTATGTGCAGATTCACACACCAGTCATCACCTCGAATGACTGTGAGGGAGCTGGAGAGCTTTTCCAGGTCGAGcCTACAGGGGATAAAAAGGACTCAGATGACCCACATTTCTTCTCTGTGCCAGCTTATCTAACAGTCTCAGGACAGCTGCATCTGGAGGTGATGGCAGGTGCCTTTTCAGCTGTGTACACATTTGGACCCACGTTCAGAGCAGAGAATTCTCAAAGCAGGAGGCACTTGGCTGAGTTTTATATGGTAGAGGCAGAGATCGCTTTCACAGAGTCACTAGATGACCTTATGAAGGTAATGGAGGACTTATTCAAGGCTGCCACAGAGCATGTGTTTTCAAATTGCACAGAGGATGTGGAGTTATTTCACAAACATGTGGCACCAGGACATCGGGAGCAAGTGGATCCCATGTTGAACAGAAAATTTAATGTCATTTCTTACACCGAGGCGATAGACATTCTCAAGAGCAGCTCACAGAACTTCACATTCAGCCCTGAGTGGGGCTGTGATCTTCAGACTGAACATGAGAAGTTCCTTGTTAAGCACTGCGGAAACACCCCTGTGTTTGTTGTAAACTATCCCTACGAGTTAAAGCCATTCTATGCCAGAGATAACCAGGACCACCCCAGACATACAGCAGCTGCTGTAGACCTCTTGGTTCCTGGTGTCGGGGAGCTTTGTGGTGGATCTCTGAGAGAAGAGAGACTACATCTTTTAACCCAAAGACTATCACAGGCTGGATTGGAGGACACATATGCATGGTATCTACAGCTGAGAGAATTTGGCTCCGTACCTCATGGTGGTTTTGGGATGGGGTTTGAGAGGTacctgcaatgcattctgggactCAACAATATCAAAGATGCGATTCCATTTGCAAGGTTCTCGCACTCCTGCCAGCTTTGATGAAGtcttataaaatgaaaacaa

Function

symbol description
nars2 Predicted to enable ATP binding activity; asparagine-tRNA ligase activity; and nucleic acid binding activity. Predicted to act upstream of or within asparaginyl-tRNA aminoacylation. Is expressed in female organism. Human ortholog(s) of this gene implicated in autosomal recessive nonsyndromic deafness 94 and combined oxidative phosphorylation deficiency 24. Orthologous to human NARS2 (asparaginyl-tRNA synthetase 2, mitochondrial).

GO:

id name namespace
GO:0006418 tRNA aminoacylation for protein translation biological_process
GO:0006421 asparaginyl-tRNA aminoacylation biological_process
GO:0004812 aminoacyl-tRNA ligase activity molecular_function
GO:0004816 asparagine-tRNA ligase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060929-596 Predicted to enable ATP binding activity; asparagine-tRNA ligase activity; and nucleic acid binding activity. Predicted to act upstream of or within asparaginyl-tRNA aminoacylation. Is expressed in female organism. Human ortholog(s) of this gene implicated in autosomal recessive nonsyndromic deafness 94 and combined oxidative phosphorylation deficiency 24. Orthologous to human NARS2 (asparaginyl-tRNA synthetase 2, mitochondrial).

Ensembl:

ensembl_id ENSDARG00000098441

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00017810 False 798 nonsense_mediated_decay 0.46 9 9601637 9619953
TCONS_00017811 True 1703 mRNA 0.46 14 9601643 9631592

Neighbor

gene id symbol gene type direction distance location
XLOC_009036 gab2 coding downstream 8105 9444982 ~ 9593532 (-)
XLOC_009035 sacs coding downstream 180156 9367101 ~ 9421481 (-)
XLOC_009034 trappc4 coding downstream 279667 9315177 ~ 9321970 (-)
XLOC_009033 si:ch211-261a10.5 coding downstream 306708 9278992 ~ 9294929 (-)
XLOC_009032 calm3a coding downstream 329309 9234052 ~ 9272328 (-)
XLOC_009038 tenm4 coding upstream 368961 10000553 ~ 10455569 (-)
XLOC_009039 AL807754.1 coding upstream 554462 10186054 ~ 10186169 (-)
XLOC_009040 CT573316.3 coding upstream 1124618 10756210 ~ 10759101 (-)
XLOC_009041 BX293559.2 coding upstream 1342125 10973717 ~ 10986106 (-)
XLOC_009042 BX293559.1 coding upstream 1466277 11097869 ~ 11099720 (-)
XLOC_009031 NA non-coding downstream 410360 9189153 ~ 9191277 (-)
XLOC_009028 CR847977.1 non-coding downstream 613878 8987643 ~ 8987759 (-)
XLOC_009025 NA non-coding downstream 999543 8599591 ~ 8602094 (-)
XLOC_009023 NA non-coding downstream 1207036 8350029 ~ 8394601 (-)
XLOC_009017 NA non-coding downstream 2536324 7064468 ~ 7065313 (-)
XLOC_009045 NA non-coding upstream 1783099 11414691 ~ 11423104 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000154_00583484_00594396 NARS2 coding CI01000154 null 583484 ~ 594431 (+)