XLOC_009041 (BX293559.2)


Basic Information

Item Value
gene id XLOC_009041
gene name BX293559.2
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 10973717 ~ 10986106 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00017822
AGCATTTCCTGGTTTGTTAAAGGGTCGAAAAACCCCTACAGCAAATGCCAAAAAAAGACCCAGCAAGTCAACAccagtgcagttttttttttttttttttgataaacaaGACCACTGATAGAACCCCAAAGGCCTCCGATGAGTTAACTCTTTTACAGGCTGGATTAGGACGGAGGACTGTTGCCATCCCAGAAGATGCAAATCACTCAGAGATATCCAAACTTCTTACAGAGACGTATacaaaaatggcatctttggaagGAGCCTGGATGCTCTATAAAGCTGTTGAACACCAAAGACCCTGACACTGAAGTTCCATCAACATCCACTAAATTGGATACATTTAGTAGCAATTTCAAGGATGAATTGGATACTGTGAATTCATTTGTGTCAGTGATGGATCCAATGgTATCTTGTCCAGTGTGTTCTGGCATGTATTCACAAGACTACATTGAAGTACACGCGAGCACCTGCGGGGAAAGATGTGAAAATAGACCAAACATGGATTTGGACATTACTGTGCAAAACCCAGACAAGCAAAGCAGcatTACAGAAGTAATCCACAAACTCAAAGAAGCAATAGATCCTACAACTATTTTCAGTGTCTGCGTCACAAGGGAGGACATGTTTAATCGAGGCTTGATGCAATGGAAACGTCAGAAGTCTTCTCCAAAGAATCCCCTCAGAGTAACATTCATTGGAGAGCCTGGGATAGACTGTGGTGCCCTTATGAAAGAATTCTTGACAGAAATGATGGCTGGGATTGAGGCAAAATTCTTTGAGGGAGGCAATTCTGGGAAAAATCTGAAGTATTCTACCACAGATTTTCAGAATGACAATTATAGGACAATTGGTGAAATCATGGCTGTAAGCATTACACAAGATGGCCCTCCCCCTAACTTTTTTCAGGAGTGGATCTACAATTTCATCTCTTCTGGGGACATTGATAAAGATCAGTTGTCAAAGGCTACAGTTACAGATGCAGATCTGCTAGACCTCATCGAAAAGATTGAGACAGCGGACGCTACAGCTCTTCTTGACCTTTTTGAAAGAATCCTCGGATGTGGGTACACTGGACTTCTAACATGTGAAAGAAAGGAGGACATTCAAAGGTAAATATTATTCTACAATGTTTTTCACGTTTTTTTGCAATCTTTGGATCTGCCTTTATAGTTTTTCTATTTTTTGAATCTTTAATACACCACCGGTCAAacatttggggtcagtaggatttttaaatgtttaaatgttaaaataagcttctcctactcaccaagactgcatttatttaatcaaaaatacagaacaaatggtaaaattgtaaaatattattgcactataaaataactgttcaaaagtagtttctaaccaaatttaatgatttatttcagtttaagattaattttcagcttcattactccagtcttcaaagTCACATAATCCAGGGGTGGGGAACCTTTTTTCCATCAAGggccatttacatttttgtaacattgttTAAGGGCTATACTAAATTATAAGGCTgcttgattatgggaaaaatcataatagcggttattttggtcataattgtaatcacaattatttaaaacgattatcagttgaagtcaaaattattcgcccacctgtgaattttgtttttttttatatataaatatttcccaaataaagtttaacagaggaatttttcacaggattttcttatagtatttttttcttctggagaaagtcttatttgttttatttcagctagaataaaagcaggtttaaatattttgaaacccattgtaatagctcaatattattagccctcttaagcaatatttttgattgtctgcagaagaaactactgttaaacaatggcttgcttaattacccttattaattttttgaatgtcagtttaagctgaatactagtatcttgaaaaatatcttgtaaaatataatgtcctgtcatcatagcaaagataaaagaaatcagttattagaaatgagttattaaatctgttgtttaaaaatgggttgaaaataaatatttccattaAACTGAAACTGGGGGGAAAgggtcgctaataattcaggagggcaaataaatctgattttatatatgcacagttattttcctccctgtaaataaggaaagggaaataaatacaataaaataaaaatataaaacaaactgctttaagcatcttcactgtcaaaaaaaaaaaacttcagctacaaaagtccttcagtcaagagcagtgagagATTTTGTCATGTTgtcagcagcaggaatattgcgcactgCCACTTTAAGAATAGAGCGGCTcagatatggtttctctttctcgtgtcttttgattctcaacttgattgttttttacacaaatgagagttaatatgaataatcactaaacacagcgctctgacacaaatgtgcatgtatttgaccattaaagcgctcgcattaagATGGCATTAGATgcgtgtgctctgctcgtctccgaggctaagtgcgcacacacacagtagTGTGTTTAGaactgtgttgaaaaaaatcttctctccgttaaagagaaattgtgagaaaaaataaacaggggggctaattctgacttcaactgtatatataataataataataataatacaacaacaacaacgtgtAGACCTGCTAGAccttttttaaagctgtttttttacCCCAGAGGTTGCAAATTTTAGTGATGCACAGTTTCAATAATCAATATGAGTTGCTGTAgttgtgctttttaaatatttggtaGCACTTTAATTTAGTGTCTGTGTCACAAAACAGTCAAGTATGCATAATTACAACTAACTTTAAAACAAACCTATTTCTAGCCATATTGTTAGTACATTGTTAATTTTACTCTGTACTTAAATGTTACATCTTAAAAACTGTCCGATTTGAAAGTATATGGTATGTAGAGCACTGTAAACTAAAGTGTAACCTAAATATCAAAATTACATGTTGAATTTGACCATGACTGTCTGCTGCGATATGGTAAACACAGCATATGCTACCCGCTTGCACATGCATGTTCCCGTACCATCACCTTGCCTGCACAGCACTTAGGGACTTACAAAGACTTTTTTAGCATTATGCAGCAGGCTGTTAGCAAAAGCAAAGAATTTGGTCGTTCTTGAGATCAATTTATAGAATAC
>TCONS_00018813
AGCATTTCCTGGTTTGTTAAAGGGTCGAAAAACCCCTACAGCAAATGCCAAAAAAAGACCCAGCAAGTCAACAccagtgcagttttttttttttttttttgataaacaaGACCACTGATAGAACCCCAAAGGCCTCCGATGAGTTAACTCTTTTACAGGCTGGATTAGGACGGAGGACTGTTGCCATCCCAGAAGATGCAAATCACTCAGAGATATCCAAACTTCTTACAGAGACGTATacaaaaatggcatctttggaagGAGCCTGGATGCTCTATAAAGCTGTTGGTGGGTCAGGTCAGCGGAAGTTGAATGTTGTCCCACCAGAAGCTAAAGGATATACAGGATCCTACATCATTAAAACGGCAGGAGGAAAGGGCTCTCTGTATATCCTGCCATTACAGAACAGTCTAGATATCTCCCCTTTACCCTATTCATCAAAAAATGCCAAAAGCACGATGTGCTTAATGCTTTACCGACATGCCAATTCAACTACTGGCTATGCACGTTCAGGAGTGTGAGACAGGGATATGCATTGATAGCAGTGATTGTGAATCGGACCCTGAAGTGCCACCCATTTCTACAAAAGTGAA
>TCONS_00018814
gtgaacttccACTTTAATACTGGAAAACAAAAGCAGCACAGTAGCAGCCCTTAAGTACCATAATTTAAGCATAAATCTAAAGGATAACTCAGATGTTGCAATTGTCCAGAGAATGTCACTTTAGATGAGCAGAGCCCACCTGGATTAttctttaaaacatattaaatatatggCTGACATATTATTATGCTTTTTCTTTCAGAGCATTTCCTGGTTTGTTAAAGGGTCGAAAAACCCCTACAGCAAATGCCAAAAAAAGACCCAGCAAGTCAACAccagtgcagttttttttttttttttttgataaacaaGACCACTGATAGAACCCCAAAGGCCTCCGATGAGTTAACTCTTTTACAGGCTGGATTAGGACGGAGGACTGTTGCCATCCCAGAAGATGCAAATCACTCAGAGATATCCAAACTTCTTACAGAGACGTATacaaaaatggcatctttggaagGAGCCTGGATGCTCTATAAAGCTGTTGGTGGGTCAGGTCAGCGGAAGTTGAATGTTGTCCCACCAGAAGCTAAAGGATATACAGGATCCTACATCATTAAAACGGCAGGAGGAAAGGGCTCTCTGTATATCCTGCCATTACAGAACAGTCTAGATATCTCCCCTTTACCCTATTCATCAAAAAATGCCAAAAGCACGATGTGCTTAATGCTTTACCGACATGCCAATTCAACTACTGGCTATGCACGTTCAGGAGTGTGAGACAGGGATATGCATTGATAGCAGTGATTGTGAATCGGTAAACTtcataatctttttaaaaatttaattgttttatttattttaacacataAAATTAGTCATATTTCATGAAATAATGGtcaattatttttaatacacagtTACTGTTTAATTTGTCTCAGGACCCTGAAGTGCCACCCATTTCTACAAAAGTGAA

Function

GO:

id name namespace
GO:0001704 formation of primary germ layer biological_process
GO:0048729 tissue morphogenesis biological_process
GO:0048731 system development biological_process
GO:0051674 localization of cell biological_process
GO:0001708 cell fate specification biological_process
GO:0021532 neural tube patterning biological_process
GO:0048468 cell development biological_process
GO:0035239 tube morphogenesis biological_process
GO:0045103 intermediate filament-based process biological_process
GO:0045104 intermediate filament cytoskeleton organization biological_process
GO:0002009 morphogenesis of an epithelium biological_process
GO:0043583 ear development biological_process
GO:0001756 somitogenesis biological_process
GO:0043009 chordate embryonic development biological_process
GO:0021571 rhombomere 5 development biological_process
GO:0035270 endocrine system development biological_process
GO:0021572 rhombomere 6 development biological_process
GO:0030154 cell differentiation biological_process
GO:0036342 post-anal tail morphogenesis biological_process
GO:0048513 animal organ development biological_process
GO:0035282 segmentation biological_process
GO:0048793 pronephros development biological_process
GO:0071599 otic vesicle development biological_process
GO:0071600 otic vesicle morphogenesis biological_process
GO:0016477 cell migration biological_process
GO:0035295 tube development biological_process
GO:0061448 connective tissue development biological_process
GO:0090596 sensory organ morphogenesis biological_process
GO:0030182 neuron differentiation biological_process
GO:0001501 skeletal system development biological_process
GO:0043049 otic placode formation biological_process
GO:0042471 ear morphogenesis biological_process
GO:0045165 cell fate commitment biological_process
GO:0042472 inner ear morphogenesis biological_process
GO:0009887 animal organ morphogenesis biological_process
GO:0007275 multicellular organism development biological_process
GO:0009888 tissue development biological_process
GO:0071363 cellular response to growth factor stimulus biological_process
GO:0051216 cartilage development biological_process
GO:0060429 epithelium development biological_process
GO:0048562 embryonic organ morphogenesis biological_process
GO:0070848 response to growth factor biological_process
GO:0072175 epithelial tube formation biological_process
GO:0048568 embryonic organ development biological_process
GO:0048839 inner ear development biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0021903 rostrocaudal neural tube patterning biological_process
GO:0021906 hindbrain-spinal cord boundary formation biological_process
GO:0048856 anatomical structure development biological_process
GO:0048863 stem cell differentiation biological_process
GO:0008543 fibroblast growth factor receptor signaling pathway biological_process
GO:0021915 neural tube development biological_process
GO:0048598 embryonic morphogenesis biological_process
GO:0048869 cellular developmental process biological_process
GO:0048870 cell motility biological_process
GO:0048880 sensory system development biological_process
GO:0009952 anterior/posterior pattern specification biological_process
GO:0060485 mesenchyme development biological_process
GO:0071696 ectodermal placode development biological_process
GO:0071697 ectodermal placode morphogenesis biological_process
GO:0007369 gastrulation biological_process
GO:0048646 anatomical structure formation involved in morphogenesis biological_process
GO:1904888 cranial skeletal system development biological_process
GO:0030855 epithelial cell differentiation biological_process
GO:0003002 regionalization biological_process
GO:0035148 tube formation biological_process
GO:0007389 pattern specification process biological_process
GO:0061053 somite development biological_process
GO:0060788 ectodermal placode formation biological_process
GO:0007399 nervous system development biological_process
GO:0032501 multicellular organismal process biological_process
GO:0032502 developmental process biological_process
GO:0007417 central nervous system development biological_process
GO:0007420 brain development biological_process
GO:0007423 sensory organ development biological_process
GO:0044344 cellular response to fibroblast growth factor stimulus biological_process
GO:0022008 neurogenesis biological_process
GO:0030902 hindbrain development biological_process
GO:0048699 generation of neurons biological_process
GO:0060562 epithelial tube morphogenesis biological_process
GO:0048701 embryonic cranial skeleton morphogenesis biological_process
GO:0048702 embryonic neurocranium morphogenesis biological_process
GO:0048704 embryonic skeletal system morphogenesis biological_process
GO:0048705 skeletal system morphogenesis biological_process
GO:0048706 embryonic skeletal system development biological_process
GO:0030916 otic vesicle formation biological_process
GO:0071774 response to fibroblast growth factor biological_process
GO:0060322 head development biological_process
GO:0009790 embryo development biological_process
GO:0009792 embryo development ending in birth or egg hatching biological_process

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000117441

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00017822 False 3174 lncRNA 0.35 10 10973717 10985904
TCONS_00018813 False 593 lncRNA 0.43 4 10984265 10985904
TCONS_00018814 True 919 lncRNA 0.38 3 10984265 10986106

Neighbor

gene id symbol gene type direction distance location
XLOC_009040 CT573316.3 coding downstream 214616 10756210 ~ 10759101 (-)
XLOC_009038 tenm4 coding downstream 518148 10000553 ~ 10455569 (-)
XLOC_009039 AL807754.1 coding downstream 787548 10186054 ~ 10186169 (-)
XLOC_009037 nars2 coding downstream 1342125 9601637 ~ 9631592 (-)
XLOC_009036 gab2 coding downstream 1380185 9444982 ~ 9593532 (-)
XLOC_009042 BX293559.1 coding upstream 111763 11097869 ~ 11099720 (-)
XLOC_009043 prcp coding upstream 232140 11218246 ~ 11303691 (-)
XLOC_009044 rab30 coding upstream 322356 11308462 ~ 11341635 (-)
XLOC_009045 NA coding upstream 428585 11414691 ~ 11423104 (-)
XLOC_009046 fkrp coding upstream 693653 11679759 ~ 11683529 (-)
XLOC_009031 NA non-coding downstream 1782440 9189153 ~ 9191277 (-)
XLOC_009028 CR847977.1 non-coding downstream 1985958 8987643 ~ 8987759 (-)
XLOC_009025 NA non-coding downstream 2371623 8599591 ~ 8602094 (-)
XLOC_009047 NA non-coding upstream 832378 11818484 ~ 11825881 (-)
XLOC_009048 NA non-coding upstream 884078 11870184 ~ 11875956 (-)
XLOC_009050 CR848025.1 non-coding upstream 990037 11976143 ~ 11976260 (-)

Expression


Co-expression Network