XLOC_009044 (rab30)


Basic Information

Item Value
gene id XLOC_009044
gene name rab30
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 11308462 ~ 11341635 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00017825
CGGCTTCCACTGGGAAGCTGTATGACGTCATTATAAAAAAGACGAGGAAACTGGGAACATCGTGCAGCAATGCGAGACGATTCTCCAAATTTGCCGAGGTATTGCCGTTGCTGCAGCACGACTCTTATAGCTTCGATTAAAAGCCTGAAGTAAAGACTGAATGCATTAGGAATCGTAGAAGCAGCGGGGTGAATCCCCTGTGTTCGCTGAGTGTGAGCATGGAGGATTATGATTACTTATTCAAAATTGTGCTGATAGGAAATGCAGGAGTGGGTAAAACCTGCCTGGTGCGACGTTTCACTCAGgGGCTGTTTCCTCCTGGACAGGGTGCCACAATTGGAGTTGATTTTATGATTAAAACTGTGGAAATAAAAGGAGTTAAGGTGAAGCTCCAGATTTGGGACACAGCTGGTCAAGAAAGATTTCGCTCTATAACTCAGAGCTACTACCGCAGTGCCAATGCCCTGATCCTCACCTACGACATCACCTGCGAAGATTCGTTCCGGTGCCTTCCTGAGTGGCTGAGGGAGATTGAGCAGTACGCCAACAACCAAGTGGTGACAATCCTTGTAGGGAATAAGATAGACTTGGCTGATAAGCGAGAAGTCCTTCGTCAACGAGCAGAGGAGTTTGCAGATTCTCAGAGCATGCTTTATCTGGAGACCTCTGCCAAAGAATCAGACAACGTGGAGAAGCTCTTTCTAGATCTGGCCTGCGAACTAATCCGTGAGGCCAAGCAAAACACGTTGGACAACAACGACTCCACTCCCATGCCCGGAGAAGGGAAAAACATCAACTATTTGGGCTGCTGCAGCATGAACTAGTAGACTTGGCCACGCTGTCTGGCTGAGGAGACAACATGGATTGCATACAAAGTGGTTTTATTGTTGGTGGCCACTGTGTAGTTGCACACTACAGTCTACACTAAGGTCTACTTTATTCTTCTTAAATTCTTGGGTATTTTAAAACATCAGTGATGCTGCTTTTAAAGTTGGCATCTGAAGCTTTTATGCTATGGACCATGGCCTTGTTGTTTTACAGTTGTGCTTGCTGGTAGGTCAGACAATGAGATTTTCTAAACTCCTGAACAATGCAACAGTTGGGATTTCCCTGCTGACTTAAGAGCCTATGTATTTTTCATATTAgagatttaaaaaacaacaacaaaattttgaatGCCGATCTTCATCAGTTATTTCACTCACCTGATAAATTGGTTTGtccaaaaatgtgtaatttattcaccctcatctGGTTCCAAATTCATATTAATTCCAACATATACTGAATCAGGAACAGCAAAATTATTTAATGACACCACCTAATTTTCTTGTGGATGAcaggaaaaaaaatgttgtaaagcATTGCAGACATGGGATTGGTTGTTGTGCATTATGACACACTACAGGAAGTGAAATAATTAATCCTGTGTCCTGATGCCTATTTGTTGTTTACAAATCCTCACATCACCTTACCTCAGGCAAATTGTGACGTTATttggagaaaaacaaacaaacaaatgtaatctGAACCTTATGGCAAGCCATATTACTTTAACTGTAGTCTAATTCTTATGAAGCCATATGATGCTTTCAGGTTTGGAACAAtatgaaggtaaatgaatgatgAAACTGTTTGTTTTAGGTTGGCTGCACTGTTAAAGGGGTAATTTACCCAAACCATttacttctgtcatcatttactaaccctCAACTTGATCCAAACTAGTTTGAGTTTTTCTCTTCTGTTCATCACAAAGgaatatatttgtaaaatgttattaactTGTTGTAATTGACATAGTATTTTCTTCCCTTTACTCGGAATGTCAGAAGCTGGGTTTCCATCAACCTGTGCTAATGCACATGTTGATGTATCGCAAATGATGGAAGCAccaaatttgaaatacattttcattGATTTGCAAAA

Function

symbol description
rab30 Predicted to enable GTP binding activity and GTPase activity. Predicted to act upstream of or within Rab protein signal transduction. Predicted to be active in trans-Golgi network. Orthologous to human RAB30 (RAB30, member RAS oncogene family).

GO:

id name namespace
GO:0032482 Rab protein signal transduction biological_process
GO:0005802 trans-Golgi network cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function

KEGG:

id description
ko04031 GTP-binding proteins

ZFIN:

id description
ZDB-GENE-040718-250 Predicted to enable GTP binding activity and GTPase activity. Predicted to act upstream of or within Rab protein signal transduction. Predicted to be active in trans-Golgi network. Orthologous to human RAB30 (RAB30, member RAS oncogene family).

Ensembl:

ensembl_id ENSDARG00000037884

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00017825 True 1929 mRNA 0.41 5 11308462 11341635

Neighbor

gene id symbol gene type direction distance location
XLOC_009043 prcp coding downstream 4771 11218246 ~ 11303691 (-)
XLOC_009042 BX293559.1 coding downstream 208742 11097869 ~ 11099720 (-)
XLOC_009041 BX293559.2 coding downstream 322356 10973717 ~ 10986106 (-)
XLOC_009040 CT573316.3 coding downstream 549361 10756210 ~ 10759101 (-)
XLOC_009038 tenm4 coding downstream 852893 10000553 ~ 10455569 (-)
XLOC_009045 NA coding upstream 73056 11414691 ~ 11423104 (-)
XLOC_009046 fkrp coding upstream 338124 11679759 ~ 11683529 (-)
XLOC_009047 NA coding upstream 476849 11818484 ~ 11825881 (-)
XLOC_009048 NA coding upstream 528549 11870184 ~ 11875956 (-)
XLOC_009049 PRLHR coding upstream 611321 11952956 ~ 11956981 (-)
XLOC_009039 AL807754.1 non-coding downstream 1122293 10186054 ~ 10186169 (-)
XLOC_009031 NA non-coding downstream 2117185 9189153 ~ 9191277 (-)
XLOC_009050 CR848025.1 non-coding upstream 634508 11976143 ~ 11976260 (-)
XLOC_009051 NA non-coding upstream 647428 11989063 ~ 11992903 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000154_00033734_00039582 RAB30.S, RAB30 coding CI01000154 null 33734 ~ 39846 (+)