XLOC_009046 (fkrp)


Basic Information

Item Value
gene id XLOC_009046
gene name fkrp
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 11679759 ~ 11683529 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00017826
GTTTTTGGTGTTTGTGCTTGTCTGCGCCTCGGTGACAGGAGTAGACCATCCTTCCCACCAACATAAAGGGTATCCCGTCAAAAGGAACGTATTGGAGTTCCCATACAATACATTTGGATCCTAGTTTGGGATCTGTAAAAGCAAGTTAGCTACACCTATAGCATTTAATTAACGGACTATGGAGAACTAAAGCCAATCTGGTTGATAATGGAGTCAGTCCATCAGTCTTTTTTCCTGAATGGGATCAGCTGACAGAGAGGAAGACATGAGTGGAAACTGATCAAGTCAAAGATGCTTCATCAAATATTCACCTCAAACACTGTCCACTTTCAGCATCACTTTTGGCCAGACTAGGATGTTATGACATTCAGAATAATCTGAGATTTCATTTACTCTTTCTGCCATAAAACCACAAGAGCCATAATGCGTATCAGTTTTTGCCAGGCTCTGTTAACTGGAGCAATCATTTTAAACTTGCTCATCTTGTATTATGTCTCGCGGGCTCAGCAGCAAATGATGGAGAAGCGTCGAGAGCAAGGTAAAGGCTTAAAGAAAGCCTCTCTTCCTGTGTCAGGCCTAGGAGCGATGGGTAACCTCGTTGGTGGAAGCATGGTTGGAGGTGTTAAATTAGGAGGTCTTGAGGGAAACATGCGTGGTCCACGCGTCACGATCCTGGTTCGGGAATTTGAAGATTTTGAAAACTATGTTGGTGATGTTGCACGCTCCTTTCTGCGGCAGAGACCAGAATTACCCTTCCTCGCAGTTGCTGAAAATTCACCGTACCCTCCTTTGGCTCTTCCAGAGGGAGCACGGCTGCTGGTGATGTCCCCAAGTCCTGACCAGCCTCCACAAACTCACCGTCCCGAGTTCAACGTGCAGACAGAGTTTTCTTTGTTAGTTCCTGATGGTGTGGAGCTGGACCATGGTCGACAAGTTGAGCGTCTCATTCGGGAGCTGGAAGGGGAAGGTGGTGGGCCGGTCCGACTGGTTGCTGCACCAGTGCTGACCCGCTCTTCAGTGCAGTGCCTTCATCTTCGGGTCAATCTGCGGGAATGGACTGCCACTTACAGCCCTGCGGCCTCAGGGAGCAGTGGTAGCGTCTGCACAGCTCTGCAGGGAGACGCTGTTGTTCTTATTCGCACCGAGGACCTCTTCAATCTCTCAGTTCCCTTAGGGCGCCCCCTGATGTCTTCCTTGTTTGTCCAAACTTCTCTTCGAGGCTGGAaggtcaaactcctggagggacCTTCATTCTCAGCCAGTCATCGGCCTTTGTTTAGCTCTGCACACAACCAGTGGAAAGCTGATAGTCGCCTGAAAGATGCCACTAATCACCTCATGCGCAGCTTTGGCCTGAAGCGCCTGATCTTGCCTGATGGTAGAGATCAGTGGTTTGGCTGCAGTAAAGAGACTGCGCGATGTTTCGGGACAGTTCGAGATGACACACCGGAATATCTTTACATTGAGCGCTGGACTCCACCTTGCTGCTTACGTGCCCTCAGAGAGACCACTAAATACGTGATCAACATTCTCGAAAGCTCTGGTGTGCGCTACTGGCTGGAAGGGGGATCCTTATTGGGAGCTGCCAGACACCAAGATATAATCCCATGGGACTATGATGTAGACTTGGGCATCTACTTGGAGGATGTCCCAAATTGCGACTACCTAAAGAATCTTGACTCTGGTTCTCTGGTTGATGCTAACGGCTATGTGTGGGAGCGAGCTGTTGAAGGCGATTTCTACCGTGTTCAGTACAGCGAAACCAACCATTTGCATGTTGATTTATGGCCATTTTACCCCCGTAATGGAGTTATGACCAGGGACACTTGGACTGAGCACAAACAAGATGTGGAGTTCTCAGAGCATTTCCTGCAACCCCTGGTGCCAATGCCATTTGCTGGCATTACCACTTATGGTCCGAACAACCATCGTGCCTTCTTGGAACTCAAATTTGGAGAAGGGGTTATTGAGAACCCCCAGTACCCAAACCCTGCCAAGAAAAGACTAGACAGAAGTCGCACATTTGGATCGTAGCAATCAGGAAGTTattgtgtgtgttatttattgtGTGTGCATTGTTTGGGAAGTCATACATCtcttaatatactgtatgtaaaagtACAGATAGTCAAAGTATGTACTTTTCTACACTGGTATATCCCAGACATGTCACAAAGACT
>TCONS_00017827
CACTGTCCACTTTCAGCATCACTTTTGGCCAGACTAGGATGTTAATGTTGAGGTTTTCACTAATTTGGACATGTTATGACATTCAGAATAATCTGAGATTTCATTTACTCTTTCTGCCATAAAACCACAAGAGCCATAATGCGTATCAGTTTTTGCCAGGCTCTGTTAACTGGAGCAATCATTTTAAACTTGCTCATCTTGTATTATGTCTCGCGGGCTCAGCAGCAAATGATGGAGAAGCGTCGAGAGCAAGGTAAAGGCTTAAAGAAAGCCTCTCTTCCTGTGTCAGGCCTAGGAGCGATGGGTAACCTCGTTGGTGGAAGCATGGTTGGAGGTGTTAAATTAGGAGGTCTTGAGGGAAACATGCGTGGTCCACGCGTCACGATCCTGGTTCGGGAATTTGAAGATTTTGAAAACTATGTTGGTGATGTTGCACGCTCCTTTCTGCGGCAGAGACCAGAATTACCCTTCCTCGCAGTTGCTGAAAATTCACCGTACCCTCCTTTGGCTCTTCCAGAGGGAGCACGGCTGCTGGTGATGTCCCCAAGTCCTGACCAGCCTCCACAAACTCACCGTCCCGAGTTCAACGTGCAGACAGAGTTTTCTTTGTTAGTTCCTGATGGTGTGGAGCTGGACCATGGTCGACAAGTTGAGCGTCTCATTCGGGAGCTGGAAGGGGAAGGTGGTGGGCCGGTCCGACTGGTTGCTGCACCAGTGCTGACCCGCTCTTCAGTGCAGTGCCTTCATCTTCGGGTCAATCTGCGGGAATGGACTGCCACTTACAGCCCTGCGGCCTCAGGGAGCAGTGGTAGCGTCTGCACAGCTCTGCAGGGAGACGCTGTTGTTCTTATTCGCACCGAGGACCTCTTCAATCTCTCAGTTCCCTTAGGGCGCCCCCTGATGTCTTCCTTGTTTGTCCAAACTTCTCTTCGAGGCTGGAaggtcaaactcctggagggacCTTCATTCTCAGCCAGTCATCGGCCTTTGTTTAGCTCTGCACACAACCAGTGGAAAGCTGATAGTCGCCTGAAAGATGCCACTAATCACCTCATGCGCAGCTTTGGCCTGAAGCGCCTGATCTTGCCTGATGGTAGAGATCAGTGGTTTGGCTGCAGTAAAGAGACTGCGCGATGTTTCGGGACAGTTCGAGATGACACACCGGAATATCTTTACATTGAGCGCTGGACTCCACCTTGCTGCTTACGTGCCCTCAGAGAGACCACTAAATACGTGATCAACATTCTCGAAAGCTCTGGTGTGCGCTACTGGCTGGAAGGGGGATCCTTATTGGGAGCTGCCAGACACCAAGATATAATCCCATGGGACTATGATGTAGACTTGGGCATCTACTTGGAGGATGTCCCAAATTGCGACTACCTAAAGAATCTTGACTCTGGTTCTCTGGTTGATGCTAACGGCTATGTGTGGGAGCGAGCTGTTGAAGGCGATTTCTACCGTGTTCAGTACAGCGAAACCAACCATTTGCATGTTGATTTATGGCCATTTTACCCCCGTAATGGAGTTATGACCAGGGACACTTGGACTGAGCACAAACAAGATGTGGAGTTCTCAGAGCATTTCCTGCAACCCCTGGTGCCAATGCCATTTGCTGGCATTACCACTTATGGTCCGAACAACCATCGTGCCTTCTTGGAACTCAAATTTGGAGAAGGGGTTATTGAGAACCCCCAGTACCCAAACCCTGCCAAGAAAAGACTAGACAGAAGTCGCACATTTGGATCGTAGCAATCAGGAAGTTattgtgtgtgttatttattgtGTGTGCATTGTTTGGGAAGTCA

Function

symbol description
fkrp Acts upstream of or within several processes, including muscle cell development; regulation of protein glycosylation; and vasculogenesis. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi apparatus. Is expressed in several structures, including cloacal chamber; immature eye; nervous system; neural keel; and otic vesicle. Used to study muscular dystrophy. Human ortholog(s) of this gene implicated in dilated cardiomyopathy and muscular dystrophy (multiple). Orthologous to human FKRP (fukutin related protein).

GO:

id name namespace
GO:0048747 muscle fiber development biological_process
GO:0035269 protein O-linked mannosylation biological_process
GO:0030198 extracellular matrix organization biological_process
GO:0001570 vasculogenesis biological_process
GO:0014706 striated muscle tissue development biological_process
GO:0060049 regulation of protein glycosylation biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003674 molecular_function molecular_function

KEGG:

id description
ko00515 Mannose type O-glycan biosynthesis
ko01003 Glycosyltransferases
ko04131 Membrane trafficking

ZFIN:

id description
ZDB-GENE-070412-4 Acts upstream of or within several processes, including muscle cell development; regulation of protein glycosylation; and vasculogenesis. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi apparatus. Is expressed in several structures, including cloacal chamber; immature eye; nervous system; neural keel; and otic vesicle. Used to study muscular dystrophy. Human ortholog(s) of this gene implicated in dilated cardiomyopathy and muscular dystrophy (multiple). Orthologous to human FKRP (fukutin related protein).

Ensembl:

ensembl_id ENSDARG00000100467

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00017826 False 2180 mRNA 0.48 3 11679759 11683529
TCONS_00017827 True 1805 mRNA 0.50 1 11679849 11681653

Neighbor

gene id symbol gene type direction distance location
XLOC_009045 NA coding downstream 256655 11414691 ~ 11423104 (-)
XLOC_009044 rab30 coding downstream 338124 11308462 ~ 11341635 (-)
XLOC_009043 prcp coding downstream 376068 11218246 ~ 11303691 (-)
XLOC_009042 BX293559.1 coding downstream 580039 11097869 ~ 11099720 (-)
XLOC_009041 BX293559.2 coding downstream 693653 10973717 ~ 10986106 (-)
XLOC_009047 NA coding upstream 134955 11818484 ~ 11825881 (-)
XLOC_009048 NA coding upstream 186655 11870184 ~ 11875956 (-)
XLOC_009049 PRLHR coding upstream 269427 11952956 ~ 11956981 (-)
XLOC_009050 CR848025.1 coding upstream 292614 11976143 ~ 11976260 (-)
XLOC_009051 NA coding upstream 305534 11989063 ~ 11992903 (-)
XLOC_009040 CT573316.3 non-coding downstream 920658 10756210 ~ 10759101 (-)
XLOC_009039 AL807754.1 non-coding downstream 1493590 10186054 ~ 10186169 (-)
XLOC_009057 NA non-coding upstream 727455 12410984 ~ 12416138 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000308_01132580_01134190 FKRP coding CI01000308 null 1132025 ~ 1134414 (+)
rainbow trout (Oncorhynchus mykiss) LOC110503493 LOC107566082 coding NC_048588.1 CM023242.2 4174020 ~ 4176885 (-)