XLOC_009058 (scn4ba)


Basic Information

Item Value
gene id XLOC_009058
gene name scn4ba
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 12466852 ~ 12500938 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00017846
ATTCTTTCCTGCGCCGGCAACAGACACAAACCGCCCCCCCTCCACCCCTCCTCTGTCCACTCATCCCAGCATGCGCCACCTATTCGGGGGTAAGACCAACAGACTCTTCCCCGGACTGAAAGCAAAGCTCTGCGGTGCGGCTGTTGCTGAATGAATGCAGCGTTTTCTTGCACCTACAACCGCACTGAGTGAGACAGAATATCAGCGAGACACTGCCGGCAACTGAGAGCCACTGATCTGAAGAGCAGAACAGCAGATCAGGTGCTGCCTCCGTATTTCTTGCTCTTCAGTTCTCCCTCCCTCCTCAGGACACACTGCGAAGGAGGACTGAGGACAGGGAGGTACTCCGCAAGACTTCCCCAGCTGAAAGTCTTTCTGTTTTGATTTTGTGACGGGTCCCGTGTGACCCCTCAACACCTCTCCCTCAGATCTTAAGTATCCTGCCAAAGACACATAGCAGGGGACCAGGAACAGACAGACAGGCACAAGTGAGCAGACGGTCTGACATGGAGTTGCAGGGGAGAAAATCATTCCTGCACAGGTGTGCGAAGTCTGGCGATGTAGTCCATGCAGGTCTGGTCATCACACTTCTAGTTGGAGTCTGGTACTCTCAGGCACTGGAGGTGAGCACAGGGAAGGTCCATTTCATAGAAGTGATGAATGGAAGTTCAGTGTTGTTACCTTGCACTTACGCCAGCTGCATCGGCATTAAAAACCTTTACTTCAGCTGGCAGTTCAAGGACAATGGGACACTAATTAAGCTGTGTGAAGCCGTCATCCCAGGAGAAGGAATAGAGCCTAATGTGAAAATCTACCATGAGCGGGTGGAGTTTGTAGGCACCAGCAAGAAAAGTAACATCTCCATCCTACTGCATAATGTCACGTTCGAGGACCAGGGAGAATATATCTGCTTCGCTCGCAACCCCAAAGAGAAGGACCGCAACCATAGTGCGGTTTTCACTCTTTATGTGGTAGATGAGTTGAGAGTGGTGGACAACACACTGACCCTCATCATTGTGTCTGTGCTCGGTGGGGTCATCGgtctcatcatcctcatcatggTGGTGAAAGCTGTAGTCATTGCTGTTCTAAACAGGGTCCAGGAGAAGAATAAAGAGTGCCTTGTGAGCTCTTCAGGGAACGACAACACAGAAAATGGCCTCCCAGGATCCAAAGCAGACAGCAAACCAACACCAAAGGCATGAGAGGAGCATGTATGTGTACATATATGAGCATATGTATACATGCATTCACATTTATAACAGATTGAAGGAAAGTCATAAAAACGGACAGTTTTATTCTCTTTAtctcaaaaagaaaacaaatgctaCATATAAATGTGTGAACATAAATATATGAACTATATTTTAGATTGTGCTTGAAAAATATAACATGCTGCTGGCTGGATCGCACTCCCTTCACTAAACTGgaaaaaatggaagaaaaattATAATCTTAATGGTTCGGTGTGCTTGCATTCTGCTCTCTCTTGTCAGCaagacacagcacacacacactgccttcTTCACAAACTGCCATATCCTTTCAATGCTAGACAGCACAAGTCCCACAAAACAAAAGGTTTGCGATAAACTTCTCCAGTGCAACTTTAACACATCTTCACACTGCATTCCAAATGACCCTTGGTGGAAGTCAGTAACAAAACAGACTTTACGAAAATAAAGAATTTACACATAAAACCATGGGTGCCTCTAAAAATTGGAAAATGTTTACCACTGATTCAAGCAGCTAACTGAGTCTATTAACCAGTCCCACTAATTTTACAAGTGATTTTAAGGTCATAAAGAGCAGGATGTAAGCACACCCGAAGGCCAGAAACACACTCTACGCAACAACACCCCCCTGTGGAAATGCTGAGAATGCAACAAAAAATAGAGGTTGCGTAGAGTATTTTTCATGCATATGGGTATTTTGTAAAGGAtctgaaagaactttttttttcacagagaTGTAGATAAAGGGTGTATTTCCAGGATCCAGCTGAGCACggtttattctatttatttaattttcctgCTTTAGATAAAACACAGGTGCCTGTAAACGCTTCA

Function

symbol description
scn4ba Predicted to enable sodium channel regulator activity and transmembrane transporter binding activity. Predicted to be involved in cardiac muscle cell action potential involved in contraction; regulation of sodium ion transmembrane transporter activity; and regulation of ventricular cardiac muscle cell membrane repolarization. Predicted to act upstream of or within ion transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of voltage-gated sodium channel complex. Predicted to be active in plasma membrane. Is expressed in atrium; brain; cardiac ventricle; eye; and musculature system. Human ortholog(s) of this gene implicated in long QT syndrome 10. Orthologous to human SCN4B (sodium voltage-gated channel beta subunit 4).

GO:

id name namespace
GO:0006811 ion transport biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-070615-18 Predicted to enable sodium channel regulator activity and transmembrane transporter binding activity. Predicted to be involved in cardiac muscle cell action potential involved in contraction; regulation of sodium ion transmembrane transporter activity; and regulation of ventricular cardiac muscle cell membrane repolarization. Predicted to act upstream of or within ion transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of voltage-gated sodium channel complex. Predicted to be active in plasma membrane. Is expressed in atrium; brain; cardiac ventricle; eye; and musculature system. Human ortholog(s) of this gene implicated in long QT syndrome 10. Orthologous to human SCN4B (sodium voltage-gated channel beta subunit 4).

Ensembl:

ensembl_id ENSDARG00000099031

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00017846 True 2072 mRNA 0.45 5 12466852 12500938

Neighbor

gene id symbol gene type direction distance location
XLOC_009057 NA coding downstream 50714 12410984 ~ 12416138 (-)
XLOC_009056 tmprss13a coding downstream 106443 12326161 ~ 12360409 (-)
XLOC_009055 fxyd6 coding downstream 147718 12273947 ~ 12319134 (-)
XLOC_009054 si:dkey-36i7.3 coding downstream 195995 12251044 ~ 12270857 (-)
XLOC_009053 dscaml1 coding downstream 236978 12071037 ~ 12229874 (-)
XLOC_009059 NA coding upstream 15250 12516188 ~ 12545683 (-)
XLOC_009060 zgc:172282 coding upstream 606404 13107342 ~ 13254480 (-)
XLOC_009061 BX897750.1 coding upstream 1323534 13824472 ~ 13824604 (-)
XLOC_009062 NA coding upstream 1533316 14034254 ~ 14038227 (-)
XLOC_009063 NA coding upstream 1561675 14062613 ~ 14064350 (-)
XLOC_009051 NA non-coding downstream 473949 11989063 ~ 11992903 (-)
XLOC_009050 CR848025.1 non-coding downstream 490592 11976143 ~ 11976260 (-)
XLOC_009048 NA non-coding downstream 590896 11870184 ~ 11875956 (-)
XLOC_009047 NA non-coding downstream 640971 11818484 ~ 11825881 (-)
XLOC_009068 NA non-coding upstream 1728310 14229248 ~ 14232070 (-)
XLOC_009069 NA non-coding upstream 1745152 14246090 ~ 14248047 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000308_00695140_00699646 SCN4B, SCN4BA coding CI01000308 null 695140 ~ 699901 (+)