XLOC_009063


Basic Information

Item Value
gene id XLOC_009063
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 14062613 ~ 14064350 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00017856
GATTTTAAGCGGAGGTAAACAGTATTATGGCAGAGTCGTCAATATTTACTCGCTGTTTGCGAGTAAATTATGGTCAACGATGTGCAAATGATTGTCCGGATGTGCTCTACAACACCGCAGAGCAAAGCTTGAGAAAGGTTTCAAGTTTTATGCATCTTCCTACCTGTGCAATTATGAAGGTAACATTATGAGATTCAGAGCTAGAAAATTTTATGTGTTACTCCATCCTGTAGCGGACATCCGTCAGAAGATCCATGCCATCATCTGCTAGTTAATAGCTCCTGCTCTTGTGTGGCTGAGAGtgggatatgcaaacatttggttgctttgcttttccagacagcccattactctgaaatgtgtaatgtgtgttgtcacatgaacaattgttttgaatggatcaattatgtgttaagttccatgaaacagaggggtgatttatttatttatttaatacgtaTAAACCCAAATACCTCTCTATGCACGAGTTACAGAAGAAGCACCTGATTCAAGAAAACAACTGATTCAATGTCATTGTTTCTGTTCATctgaataaaatctttttttcaaaatgtt
>TCONS_00019131
TTACTTCCGCGTTTTGACTAAGGCCGCGGTCCAGCTTCCGGTCTGGGTGATTTTAAGCGGAGGTAAACAGTATTATGGCAGAGTCGTCAATATTTACTCGCTGTTTGCGAGTAAATTATGGTCAACGATGTGCAAATGATTGTCCGGATGTGCTCTACAACACCGCAGAGCAAAGCTTGAGAAAGGTTTCAAGTTTTATGCATCTTCCTACCTGTGCAATTATGAAGGTAAGTTCAGCTAGCCTAAAGGCTAACTTTAGCGTTAATACTCTTACGATCCGTCCATCTGCAGCTTTATCACgtaagtaaaaataatcatatgtGTACGTAATTCTGCCTCAAAGGTGCAGGTAAAAACAGGGCAGGAATAATATCTCAGTGAGAGCTCATTACTACCGATAGATCTATGAAGAAATCGGAGTCTCCTCACCAGCTGAGAGTAGGACAGCATAACTTACATGTGAAATTCTGTCCCATTCATACTTTTACTGTTCTAAAGTGACCACCACTGTTTAGTTCGGATAATTACAGAAACACAGATGCTGTCTTAGCTTGTaagcatgattattgagcaagatatattaggaataaaataatacaatgccgTTCCATCCACAACAGACAAATAGCACTGTGTCAATGCTGAGATTTATTGCTGAAACAGTGGAGATGACAGATGCAGTGTAACAGTGTAGATGGCATGCTTTCTATTTAGTcgataacattgtaattaaatgggagggtgacccaaaacaataaggtgtcattagttaatttcacatcaacaatttgtctattgcaatatttattattatttatattaatgaacaaatgcttattcattgtgcttgttaacttacaatgtaatagctaatgttaacaagcatgactttggatttttattcattttcaaattagtttaacaatgctaactattaaatattaaatagttattttaatagtgagcaaatacattaactaatgaaaccttattttaaagtgtgactaaagggagctacttttaattaatttaaattaatgatttactgtgtagtttaatctgatgatattgctgcagatgcctttcaaaagaagatattttgaagaaagctgaaaacctgtaaccattgactaccatagtaggaaaaataactactatgaatatcagtggttgcaagtttccagctttcttcaaagtatttttgtttgtggtaaacatcagaaagaaactcaaacaggtttggaacaagtgaaggatgaggaaatagaattttcagttttgagtgaactgcctttaatgactctttaaaaacctattaatattcttgtttctgttttctagGTAACATTATGAGATTCAGAGCTAGAAAATTTTATGTGTTACTCCATCCTGTAGCGGACATCCGTCAGAAGATCCATGCCATCATCTGCTAGTTAATAGCTCCTGCTCTTGTGTGGCTGAGAGtgggatatgcaaacatttggttgctttgcttttccagacagcccattactctgaaatgtgtaatgtgtgttgtcacatgaacaattgttttgaatggatcaattatgtgttaagttccatgaaacagaggggtgatttatttatttatttaatacgtaTAAACCCAAATACCTCTCTATGCACGAGTTACAGAAGAAGCACCTGATTCAAGAAAACAACTGATTCAATGTCATTGTTTCTGTTCATctgaataaaatctttttttcaaaatgtt

Function

GO:

id name namespace
GO:0044424 obsolete intracellular part cellular_component
GO:0005737 cytoplasm cellular_component
GO:0016887 ATPase activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00017856 False 576 lncRNA 0.38 2 14062613 14064302
TCONS_00019131 True 1738 lncRNA 0.35 1 14062613 14064350

Neighbor

gene id symbol gene type direction distance location
XLOC_009062 NA coding downstream 24386 14034254 ~ 14038227 (-)
XLOC_009061 BX897750.1 coding downstream 238009 13824472 ~ 13824604 (-)
XLOC_009060 zgc:172282 coding downstream 808133 13107342 ~ 13254480 (-)
XLOC_009059 NA coding downstream 1516930 12516188 ~ 12545683 (-)
XLOC_009058 scn4ba coding downstream 1561675 12466852 ~ 12500938 (-)
XLOC_009064 trappc6bl coding upstream 11654 14076004 ~ 14083140 (-)
XLOC_009065 si:ch211-116o3.5 coding upstream 20837 14085187 ~ 14098522 (-)
XLOC_009066 pnkp coding upstream 98843 14163193 ~ 14194208 (-)
XLOC_009067 NA coding upstream 139325 14203675 ~ 14212777 (-)
XLOC_009068 NA coding upstream 164898 14229248 ~ 14232070 (-)
XLOC_009057 NA non-coding downstream 1646475 12410984 ~ 12416138 (-)
XLOC_009051 NA non-coding downstream 2069710 11989063 ~ 11992903 (-)
XLOC_009050 CR848025.1 non-coding downstream 2086353 11976143 ~ 11976260 (-)
XLOC_009069 NA non-coding upstream 181740 14246090 ~ 14248047 (-)
XLOC_009071 BX957341.1 non-coding upstream 251004 14315354 ~ 14315470 (-)
XLOC_009076 CR388387.1 non-coding upstream 571319 14635669 ~ 14635785 (-)
XLOC_009080 CR936977.1 non-coding upstream 818941 14883291 ~ 14884061 (-)

Expression


Co-expression Network