XLOC_009064 (trappc6bl)


Basic Information

Item Value
gene id XLOC_009064
gene name trappc6bl
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 14076004 ~ 14083140 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00017857
CTACAGCAGGTGGCAGTATTGGTTGTCAGAATCGGCGCTACAGCAGGAGAACTGAAGACGGACAAGTGTTTGgttctttataaatgtatttttattccaCACCTGAAGATACGTGCAAGCAGTATGGCAGATGACGCTCTGTTTGAGTTCCTCCACATGGAGATTGTTGCTCATGTTTACAAAGAGCAGGCGACCCGTGATGACATTGATAAGGAGCGAGTGACGTGTGTTTCTACTCTAGAGTTGATGGGCTTCAGAGTTGGACAAGGACTTATTGAAAGgtttacaAAAGACTGCCCCACTTTCAAAGATGACTTGGACATAATGAAGTTCGTATGTAAAGACTTCTGGAGCACTATCTTCAAAAAACAAATCGACAACTTGAGGACCAACCATCAGGGCACATACGTCTTGCAGGATAATAAGTTTGCACTACTCACTCAGTTTTCCAGTGGAAAGCAATACCTTGAAGAGGCCCCTAAATATTTGGCCTTTTCCTGCGGGATGATTCGAGGAGCTCTTTCTAACCTGGGTCTGGAGAGTGTGGTCACTGCTGAGGTTTCTCTAATGCCATCATgcAAGTTCCAGGTTGTTGTTCAGAAACTGTAGGATGGAGAAGAAGAGAAATGAACTTTTATATGTGAATGTGAGTTAGATGAACCTATATTCGACATGTTtacaacatttgtttttcatataatGCGGTTTCGAGTCATATTTTGGTGAGACTGTTTCATAATTCCTCTAAATATTTCGCTCCACCAGATGGATTTGGAAATATATTGATTGTCATAAATTCTACCTCAAGAGCAGACTGGATTATTGTAACAATCATGGAAATATATTTTCACTAACATGACATTTCATAACCTAATATTTTAATACGATACAACATCAGGTCACGTAACTTATTTTGGCCACTTTTATACCTCTTTGGCGAAtaagatattaaaaatgtttaaattagttttgtcctgcatttttattctaaatgtaatttatttctcaaAATTTGGGACTGTTAGTATGCACGGTTATCTTTAAAAgccataatttaataataaaagatcTGATTCATTAATTGAGAAATAAAGAAAATCGTATGGAATGATGTGAGTGGTTGCTGAAGAAACAACTTTTGGGTTTGCTAGTTCAATGACAACAAACAGATTCTTGATTTCACCAGTAGAGGGCAGTCTTCATCAGTCAGATGAAAGCTTAATACAATAACATGCTTTCATAAAAGTTTCCTTTGTATGATCTTGTACAAGCTTCTTGCACTTAAGTTAGTCTTTACTGGTACAGTCTTTGGTACAGTTGTGTTGTGTAGAGCGTGTTTTTGTCATCAAATGCTCAATATCCAGATGAATTTGCAAATCTTCAAATAAATGGAGGATTAAATCTTG
>TCONS_00017858
AGAATCGGCGCTACAGCAGGAGAACTGAAGACGGACAAGTGTTTGgttctttataaatgtatttttattccaCACCTGAAGATACGTGCAAGCAGTATGGCAGATGACGCTCTGTTTGAGTTCCTCCACATGGAGATTGTTGCTCATGTTTACAAAGAGCAGGCGACCCGTGATGACATTGATAAGGAGCGAGTGACGTGTGTTTCTACTCTAGAGTTGATGGGCTTCAGAGTTGGACAAGGACTTATTGAAAGGGCACATACGTCTTGCAGGATAATAAGTTTGCACTACTCACTCAGTTTTCCAGTGGAAAGCAATACCTTGAAGAGGCCCCTAAATATTTGGCCTTTTCCTGCGGGATGATTCGAGGAGCTCTTTCTAACCTGGGTCTGGAGAGTGTGGTCACTGCTGAGGTTTCTCTAATGCCATCATgcAAGTTCCAGGTTGTTGTTCAGAAACTGTAGGATGGAGAAGAAGAGAAATGAACTTTTATATGTGAATGTGAGTTAGATGAACCTATATTCGACATGTTtacaacatttgtttttcatataatGCGGTTTCGAGTCATATTTTGGTGAGACTGTTTCATAATTCCTCTAAATATTTCGCTCCACCAGATGGATTTGGAAATATATTGATTGTCATAAATTCTACCTCAAGAGCAGACTGGATTATTGTAACAATCATGGAAATATATTTTCACTAACATGACATTTCATAACC
>TCONS_00017859
CTACAGCAGGTGGCAGTATTGGTTGTCAGAATCGGCGCTACAGCAGGAGAACTGAAGACGGACAAGTGTTTGgttctttataaatgtatttttattccaCACCTGAAGATACGTGCAAGCAGTATGGCAGATGACGCTCTGTTTGAGTTCCTCCACATGGAGATTGTTGCTCATGTTTACAAAGAGCAGGCGACCCGTGATGACATTGATAAGGAGCGAGTGACGTGTGTTTCTACTCTAGAGTTGATGGGCTTCAGAGTTGGACAAGGACTTATTGAAAGgtttacaAAAGACTGCCCCACTTTCAAAGATGACTTGGACATAATGAAGTTCGTATGTAAAGACTTCTGGAGCACTATCTTCAAAAAACAAATCGACAACTTGAGGACCAACCATCAGGATAATAAGTTTGCACTACTCACTCAGTTTT
>TCONS_00017860
GTGCAAGCAGTAAGtaattttaaaagtgtttacGCTGACGCCACATCATATTTACGGCCAACTAATTGAGCGAGTATCGTTAAATATCGATAGATGTGCAGAATAGCATTAGCTGATCTGTTTGAGCAGAAGTCAACAGTTCTACAGATGCACATTTCTATGTGCTGTATGGCAGATGACGCTCTGTTTGAGTTCCTCCACATGGAGATTGTTGCTCATGTTTACAAAGAGCAGGCGACCCGTGATGACATTGATAAGGAGCGAGTGACGTGTGTTTCTACTCTAGAGTTGATGGGCTTCAGAGTTGGACAAGGACTTATTGAAAG

Function

symbol description
trappc6bl Predicted to be involved in endoplasmic reticulum to Golgi vesicle-mediated transport. Predicted to act upstream of or within Golgi vesicle transport and regulation of GTPase activity. Predicted to be located in endoplasmic reticulum. Predicted to be part of TRAPP complex. Predicted to be active in cis-Golgi network and trans-Golgi network. Orthologous to human TRAPPC6A (trafficking protein particle complex subunit 6A).

GO:

id name namespace
GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport biological_process
GO:0048193 Golgi vesicle transport biological_process
GO:0043087 regulation of GTPase activity biological_process
GO:0005801 cis-Golgi network cellular_component
GO:0005802 trans-Golgi network cellular_component
GO:0030008 TRAPP complex cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1602 Predicted to be involved in endoplasmic reticulum to Golgi vesicle-mediated transport. Predicted to act upstream of or within Golgi vesicle transport and regulation of GTPase activity. Predicted to be located in endoplasmic reticulum. Predicted to be part of TRAPP complex. Predicted to be active in cis-Golgi network and trans-Golgi network. Orthologous to human TRAPPC6A (trafficking protein particle complex subunit 6A).

Ensembl:

ensembl_id ENSDARG00000033171

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00017857 False 1406 mRNA 0.37 7 14076004 14083140
TCONS_00017858 False 726 nonsense_mediated_decay 0.40 6 14076539 14083113
TCONS_00017859 False 430 mRNA 0.43 5 14079937 14083140
TCONS_00017860 True 326 mRNA 0.42 3 14082178 14083028

Neighbor

gene id symbol gene type direction distance location
XLOC_009063 NA coding downstream 11654 14062613 ~ 14064350 (-)
XLOC_009062 NA coding downstream 37777 14034254 ~ 14038227 (-)
XLOC_009061 BX897750.1 coding downstream 251400 13824472 ~ 13824604 (-)
XLOC_009060 zgc:172282 coding downstream 821524 13107342 ~ 13254480 (-)
XLOC_009059 NA coding downstream 1530321 12516188 ~ 12545683 (-)
XLOC_009065 si:ch211-116o3.5 coding upstream 2047 14085187 ~ 14098522 (-)
XLOC_009066 pnkp coding upstream 80053 14163193 ~ 14194208 (-)
XLOC_009067 NA coding upstream 120535 14203675 ~ 14212777 (-)
XLOC_009068 NA coding upstream 146108 14229248 ~ 14232070 (-)
XLOC_009069 NA coding upstream 162950 14246090 ~ 14248047 (-)
XLOC_009057 NA non-coding downstream 1659866 12410984 ~ 12416138 (-)
XLOC_009051 NA non-coding downstream 2083101 11989063 ~ 11992903 (-)
XLOC_009071 BX957341.1 non-coding upstream 232214 14315354 ~ 14315470 (-)
XLOC_009076 CR388387.1 non-coding upstream 552529 14635669 ~ 14635785 (-)
XLOC_009080 CR936977.1 non-coding upstream 800151 14883291 ~ 14884061 (-)

Expression


Co-expression Network