XLOC_009065 (si:ch211-116o3.5)


Basic Information

Item Value
gene id XLOC_009065
gene name si:ch211-116o3.5
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 14085187 ~ 14098522 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00017861
ttaaataaaaatacacattaaaagagtttaaataaacgcACAGCTATTATTCACgaacaacaataaatgtaataCGGGCCGCTAATCTCTGCCTATGCCAGGTTTCAGAGTTCAGGCAAATGGTCATTCTACCCTGACTTTCATTTCTATGAGGAATCAAGAGGAAAAGGCTCAGTATGAAGTAAACAGATGTTCTCAGTGTGCTGATAACGTTGAAAATCGTTCGCTATCATCAGACATctacatgtttttacgcagtcgGTCATTCGGCGAATGCACCGCGTCTCATCGGATTGGGAGGCGTTTTCGATGAATCCCTGCAGCACTACAGTATGTGCAGGAGAAGGCCTACAACTTAACAGTGGGTTGCATGTATAGGGGCCTCAACCAGGGTGAAGACCATGAACCTGAACGAGAAGAAGCCCAACAAGTGGTGGACAGAACCGGACACATTTGCCATGCTGGCCCTCATAGAGCAGATGGGACTGGTCCATGAGCTGGACAAGAAGCGCCAGCGGAACGAATCCCTCTTCCGACGCTTGAGGCTCAGTCTGGCAAAGCGTGGCATCCACTTCACCGTCACCCAGATCCGCAACCGCTGGAAGAGCCTTAAACACAAGTATCGTAAGATCAAACTGGCCAGCTACCGAAGTCCTGCTGCACGCCTCTCCGCCGTCGAGTCTTTCCGCTACTTCCACATGCTGGATCATATGCTGGTGCGCAGACCAAAGACGGGAAGCAGGGAGGACGGCCTCATCGATGGACATGCTTTGCTGGGACGGTCACTCGCAGACCTGGACGACCATGCAGACAGTCCGTGGCCTGAAGGTCTAATCCCTAAATGTGATCTTGAGAGCATGCCTTCTACCCTTGAACCTGAAGTAGACAAGAGTCTAAATCCAGAAGACGTGGCTGAATCTGAGCCTCCAAGTTGGGCTGTAGGACCAGATGAAGTGATGACCCTGGGCCTGTCAGGAGAATACCTCTATGCAGTGAAGACTGAACCGCCTTCCCTATGCACGCCCAACAGCACAGAAAGTACCAGAGATGCCATTGACTGCAGCCATGATGATTTCCCAGGAACTTCTGAGGAGACCAGCAGTCTTATCCTCCAGCAACTGACTATCCTAAACCACCGGCTTGGAGAGCAGCTAGCCGAGCAGAGGGCCTTCCACTGCAGCATGCTGGGAATGATGGACCGCCAGATCCAGGTACTGGAGCAGCTCTCCAATTTCACCAGGAACCACCAGCCCAAGGTCAAAACCCCAGAGATAGACTCCTCAGTCAGTCTGACCGTGCATGAAGCTCAAACGCAGACTCTTGAATCATGTCCCACGTTTATCTTGCCCAAAACCGAACCAACAGATGCTCCTTGGAAGGTTTCAGTCCTGGAAGTCCACAAAAGGTCTCCTTCTGAACCGACAATTGAAAATGAGATTTCTCAAACCATGGAAGAACGCAACAAAAACGCCTCTAGTCCACCTTCTTTAGAGATTTCATCTTTAACCAAGAACGCTATTGTGCAGAATGGGCTGTGTAAGCATGATTGAGTGCTTGGGTTGTTATGCATTTGATAGGAACTCTTTTGTCATGTAGATGTTTCAGGAGTGCAATATCTGAAACATCAGCAGAATACGTGTTTTTCTTTCAGTTTCATAGGAAAGTATTTGGTGCTCTGATGTTTTAATCAGTAACACTTTGGAGAACTACAACAATAGactcattgttattatttatttagtctgGGTTGTTTGCGAACTAACACTTGATGTGTATTTTAGATGGTAAGTCATTCAGCAGTGACTGATTTGAAATCACAGTTTGGACCAAGGTAGATTTTTGTCCGTAATCATCTAGCATTATCTGAGAAAAAGTCGCTGGTAAGCTTAAAGATGTGTAAAAGTATGAGCTTCTTCCAGTCAGATTTGGGACACACCTCAAGGCTGATTTTAATGAAAGGCTGTGTGTCGTCATCAATTTAATCATCTAATCTCAACTCGTATGTGATTTAGTATGAACTGTTAATTTCAATAACTGCTTGCCTcttattataaagtaatatttcaCTGA

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-4627 No description available

Ensembl:

ensembl_id ENSDARG00000097692

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00017861 True 2070 mRNA 0.46 4 14085187 14098522

Neighbor

gene id symbol gene type direction distance location
XLOC_009064 trappc6bl coding downstream 2047 14076004 ~ 14083140 (-)
XLOC_009063 NA coding downstream 20837 14062613 ~ 14064350 (-)
XLOC_009062 NA coding downstream 46960 14034254 ~ 14038227 (-)
XLOC_009061 BX897750.1 coding downstream 260583 13824472 ~ 13824604 (-)
XLOC_009060 zgc:172282 coding downstream 830707 13107342 ~ 13254480 (-)
XLOC_009066 pnkp coding upstream 64671 14163193 ~ 14194208 (-)
XLOC_009067 NA coding upstream 105153 14203675 ~ 14212777 (-)
XLOC_009068 NA coding upstream 130726 14229248 ~ 14232070 (-)
XLOC_009069 NA coding upstream 147568 14246090 ~ 14248047 (-)
XLOC_009070 dpf1 coding upstream 158710 14257232 ~ 14375571 (-)
XLOC_009059 NA non-coding downstream 1539504 12516188 ~ 12545683 (-)
XLOC_009057 NA non-coding downstream 1669049 12410984 ~ 12416138 (-)
XLOC_009051 NA non-coding downstream 2092284 11989063 ~ 11992903 (-)
XLOC_009071 BX957341.1 non-coding upstream 216832 14315354 ~ 14315470 (-)
XLOC_009076 CR388387.1 non-coding upstream 537147 14635669 ~ 14635785 (-)
XLOC_009080 CR936977.1 non-coding upstream 784769 14883291 ~ 14884061 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000308_00056869_00059824 NA coding CI01000308 null 56288 ~ 60641 (+)
bowfin (Amia calva) AMCG00013547 trappc6a,LOC106580727 coding CM030125.1 CM030125.1 35286346 ~ 35306459 (-)