XLOC_009068


Basic Information

Item Value
gene id XLOC_009068
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 14229248 ~ 14232070 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00019132
ccggaattattaatttaattcaactgataagaatctgattaccggaattattaatttatttctactgataagaatctaattaacgGAAAGGGGCGGGGTTTACACCGGAAGCCACGCCCTAAAAGGGGCGTGGCGGTCATCAATCAAACTTTTTGACACATGCCACCGGATATTACTCTCTCTGTCCTATGACATTGCAGTACAACATCAATCTGGCTTCatattgatgtcctgtgcctgctggaatTTAGCCTATGGAATCTGAATGCTACAAACTGTCTTCATGTATAGATGAATTCCTTTATTAAGAAGGGTCAGGTGCATGTATGTCAAGCAGAGTCAACCTCTCTCTGCATgaacatgaaagaaaaaaaagaaaagtaaattttaaaaatctgctgatttattCCGCACTTCCAACACGATCCCCACCTCCTCTTCCTACACTGAAAAAGCCAACATTGAATCCCCTCTCAGCCAGGGTGCATTTATAAGAGTGTATATTCGTCGGGCAACATCTGTCCTTGTTTCAAAAACAGGGCGTTAAATGTTCGATTGTTCTCTTTTTTTATGATGACTTGCTTGCATGTTGTAATAGTatcgtttttaaatgatttaaggaCAAAAAATGAAGAAAGCACACTTATTCTGCAataatgtttttgtgtttgtggcCCTCTCTGGGGAAGTTGCGTCTGTATGTATGTGCGCTTTAAAACTCTCTTTTGAACCATACAGTGGGCGGGGCATTTAAAGAGGGAGGAGTTTTTGAAATTCTGACGTTTTCAGACGCCACCATGATTTCTCAATTTTCCTGGAGAAACTGGAGAAAAAGACCAGCTTTGGAGActcctatttttttcttttggtttggTCCCGGTCTCCGTGGAGGGGCATTTTTCCTTCATTGTGCGCCTCTTTTGTAGAATGAGCTCTTTACTATCTGTAagtctgctttgtgttctgaGACTTGCTACAGCAGCCtgcttaaaagaagaaaaaatgtcAAGCTAAATCCAGGGGAGAGTTTCGGGGGACGGCAGCATGTGAGTGTGTGCGATTATGCTGAGGTGACTGTTTTTGAACCCAAAGTCCCCTCTTTACCGTGGCCTAACTGAAAAGACTGCCTGACATTTTCTCTACACCGAGTCCTTGAGCTTTAAGTTGCGAGACGTTTGCTGTAAATAGATAAGTGCTCTGTCTTTCCAGAATCAGTCCATGTTATAGACTGTAAGACAATAAGTGAATTGTTCCATGTGCTGTAATGCATCAAAATGTGAAAACAGCCTTTTCTACGCTGTCTGTGGAATATTAATCCATGGTATTGGGTTATTTctatttttgtatcattttatGGTTTGAATGAGCACTACACCATTGGCTACTCTGATGCCAGATATGTAAATCTCCTCACTTCTTTTTAAAAGAATCCAGCATTTTGTCTTAGTAGAACTAGTTTAGATTTCACATTTTGATATGTCAACCTCTCTGTTCGGCCGACtctttgttgtttcttttttgtactattttgcACAGTCAGTTTAGTTTTTTTGGAAGGCACTGTTAAAGTGTTTTGATAATAAAATTCAAGCAATTACTCCTGAGACAAAATTCTAGACACGTTTTGCATGTGCTGATATCCATAACACATAATACTTACACATGAAATGTGTTGATTCCTTTCCTCTGAGTTCCTGAAGCCAAAACACTGTGGCGTTTTCAAAACATTGCTCTGTTTGTTTGAGTATCCCGGCATAGCAACACTGATCAACCAATAGCAAGCGTCTggaggcggagctatcagtcagtGTGACCAATGGCTGATGGAATTTGTCACTAGTGGTTCAGAAATGACACACTTCACTTTTCACAGTGTTAAGAGGGAAATATATTTTGATTTGCCTGCCTTGCTGAGATTTCTTTGGGTTAGAAACTAACCTTCATGTTCTGTAGTATTTTCTAGAAGGATTGTCAAGCTGTTTCTCATGTTCCCCCAAAGTTTGAACGAGGGGCTGTGATTGGTTCATGTGAAAATGTGTTAGTTCACAGGCCTTTAATGAAGAGGTGCGGAGTCATAATGATGTGATTGTATTCTTAGTAATGTGAGAGTTTGGGTGGCATTTTGTGGGACAAAGGCTTATTAAAATGGCAAGAAACGACATTTCTGTTTCAGTGTGGACCAGCTTTGTTTGAGATCTTGCTCTATTTGTCTTTAATCTGTCTCACTGATTTCGCAGGGTCTTCTCTACCTGTATATTGTTGTGCTGTGATTTCcgcttgcagtttttttttccattcccaaacacacacacacaaaagatacTCTTGTGCGAGAGGACGAGTGAGTGTTTTCCTTTCTTGTAAATGTCCATAGAAAAATAAAACTGATGTATGGAGAAAAGAAGCGTGTTTTGACTCAGGTCTGAGTTGTACATTTGTTTTCACTGAACTTGAAATGGGTGCTCCTCGTGGCACTGAGTGGCTCTGATGATGACTGCTGCTCAGTGATCCATTTTAAAGAATGTCCTCTCTTTTATTTCTGTCCATTTTGACaagcaggaaataaaaaaatgtactatTATCTGATTTTGTCTACTGTTATGTTTCCAGCCAAGCAGCTCTGAAATTAAGAATTTAACTTTGTCTGTCCACAGAGTATCATCTGATTCGTATAAAAATGTCGTTTTAGAATAAGAGTATTTTCTCTATAATAAAAATGCTTCTTTGAAGGATGTTCGAGTTTCTATTTATAAAAGGAATATTAATCGTTTACTATTTGTTTGGGGTTAGTTCAtcccaaaattaaaatgattgattactcac

Function

GO:

id name namespace
GO:0048731 system development biological_process
GO:0050877 nervous system process biological_process
GO:0043010 camera-type eye development biological_process
GO:0048513 animal organ development biological_process
GO:0007275 multicellular organism development biological_process
GO:0050953 sensory perception of light stimulus biological_process
GO:0002088 lens development in camera-type eye biological_process
GO:0048856 anatomical structure development biological_process
GO:0007600 sensory perception biological_process
GO:0007601 visual perception biological_process
GO:0048880 sensory system development biological_process
GO:0003008 system process biological_process
GO:0032501 multicellular organismal process biological_process
GO:0032502 developmental process biological_process
GO:0001654 eye development biological_process
GO:0007423 sensory organ development biological_process
GO:0150063 visual system development biological_process
GO:0005198 structural molecule activity molecular_function
GO:0005212 structural constituent of eye lens molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00019132 True 2823 lncRNA 0.39 1 14229248 14232070

Neighbor

gene id symbol gene type direction distance location
XLOC_009067 NA coding downstream 16471 14203675 ~ 14212777 (-)
XLOC_009066 pnkp coding downstream 35040 14163193 ~ 14194208 (-)
XLOC_009065 si:ch211-116o3.5 coding downstream 130726 14085187 ~ 14098522 (-)
XLOC_009064 trappc6bl coding downstream 146108 14076004 ~ 14083140 (-)
XLOC_009063 NA coding downstream 164898 14062613 ~ 14064350 (-)
XLOC_009069 NA coding upstream 14020 14246090 ~ 14248047 (-)
XLOC_009070 dpf1 coding upstream 25162 14257232 ~ 14375571 (-)
XLOC_009071 BX957341.1 coding upstream 83284 14315354 ~ 14315470 (-)
XLOC_009072 numbl coding upstream 204089 14436159 ~ 14552101 (-)
XLOC_009073 coq8b coding upstream 322228 14554298 ~ 14589677 (-)
XLOC_009061 BX897750.1 non-coding downstream 404644 13824472 ~ 13824604 (-)
XLOC_009059 NA non-coding downstream 1683565 12516188 ~ 12545683 (-)
XLOC_009057 NA non-coding downstream 1813110 12410984 ~ 12416138 (-)
XLOC_009051 NA non-coding downstream 2236345 11989063 ~ 11992903 (-)
XLOC_009076 CR388387.1 non-coding upstream 403599 14635669 ~ 14635785 (-)
XLOC_009080 CR936977.1 non-coding upstream 651221 14883291 ~ 14884061 (-)
XLOC_009081 NA non-coding upstream 796142 15028212 ~ 15030391 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G141572 NA non-coding CI01000027 null 4617006 ~ 4619841 (-)