XLOC_009069


Basic Information

Item Value
gene id XLOC_009069
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 14246090 ~ 14248047 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00017870
TCATCGCCTGTTGATGTGATTCGTCTCCTTCACCACCTCTTCTAGTCTACACTAAACTTTTTGAGGAAGCATGGCTCGTcAATTAAATTCATCAGAGATTGATGCTTTTGAAGCCATCAACCAATTCTCGTGGCCTCGATCCAATGCTGACGCCCAAAGGGAAGaagATATAATCGAGGTCATTGATTTAACAGCGGAGGACGAGCAAGAAGCCACCGATCTGGTCCAAGCCACGTTGGTCAGCTCGACACGGCCGGAAAAAAGACGCCTTGATTATAACTTTAGCCCTGTTTCAAACAAGAGGCTGAAAATTTATACCGCCGTACAGGATCAACATATTGAATACGATGGTGATGATGAAGACGAAGCTCGTTTAGTTCCGCGATCACCGGATACCAGCCCGCTCGGACCTCGGGAAAGTGTTTTTGAAATACAACAACTTCCCACGTCTCCGGCTAGCAGCCCCAACGGACCTTCTGAATGCAGTATTGAGGCACAACATTCACCAAGCCCTCAACGTTGGTCGGATGACGGTGAATCCAGCGATGGTTATGCCTCAACGCTAGGTGGCGGTCGCAGTCCTGTATATACACCATACCCGTCTTTAGTAGTAGAAGAAGAAGACGAGCCGGAAAAGGAGGAAGAAAACAATCATGGCGGCGACCACGTTTTCCAACCACAACAAACCGATGATCTCACACTAACAGGACCCAGCTCTATCGTCGAACCCGATTTTAATCAACTAGTTCTGCAATATCTGGAGCGAAACCAGGTAAAAATTGATCAGATATCTGAATATGTTTTACACCAGCAGCGTGATATAGATGAACAATTAAGGGCTGCAAATCAGAAACTGACTGATGTGTTAAATTTACTGAACAAAGCTGAACGTGATCGCCGTGTTTTAGGTTCAATACTCTGTTCAATTAAAAATGCTTTGATACGTAGATGATTCACCAATAacactgtttttatttactcaatGTACTTTTATTACTAGATTTTGATTCATGTTAGCTAGCCTTATGTTTTAGTTATTCGTTTTGATCAAGTGTGTTAAGTTTGTGTGTAATATCTGATCTCTTTTTGTTTGATtagttagattttacattttccCCCTGTATTAATTTTCTTAATTCTGTTTTgattgtacattttaaaagatttataaattTTCAATTTGAGTTTACAATTAAACATTGTATTTGCTTTGTTTCATACTGTTTCAATG

Function

GO:

id name namespace
GO:0001704 formation of primary germ layer biological_process
GO:0048729 tissue morphogenesis biological_process
GO:0001706 endoderm formation biological_process
GO:0045995 regulation of embryonic development biological_process
GO:0001711 endodermal cell fate commitment biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0001714 endodermal cell fate specification biological_process
GO:0007498 mesoderm development biological_process
GO:0002009 morphogenesis of an epithelium biological_process
GO:0043011 myeloid dendritic cell differentiation biological_process
GO:0036342 post-anal tail morphogenesis biological_process
GO:0003401 axis elongation biological_process
GO:0001773 myeloid dendritic cell activation biological_process
GO:0045165 cell fate commitment biological_process
GO:0009887 animal organ morphogenesis biological_process
GO:0009888 tissue development biological_process
GO:0060429 epithelium development biological_process
GO:1903224 regulation of endodermal cell differentiation biological_process
GO:0010453 regulation of cell fate commitment biological_process
GO:0060974 cell migration involved in heart formation biological_process
GO:0060975 cardioblast migration to the midline involved in heart field formation biological_process
GO:0010470 regulation of gastrulation biological_process
GO:0048332 mesoderm morphogenesis biological_process
GO:0007369 gastrulation biological_process
GO:0003260 cardioblast migration biological_process
GO:0060795 cell fate commitment involved in formation of primary germ layer biological_process
GO:0060026 convergent extension biological_process
GO:0060028 convergent extension involved in axis elongation biological_process
GO:0060029 convergent extension involved in organogenesis biological_process
GO:0042659 regulation of cell fate specification biological_process
GO:0042663 regulation of endodermal cell fate specification biological_process
GO:0003318 cell migration to the midline involved in heart development biological_process
GO:0097028 dendritic cell differentiation biological_process
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00017870 True 1231 lncRNA 0.41 7 14246090 14248047

Neighbor

gene id symbol gene type direction distance location
XLOC_009068 NA coding downstream 14020 14229248 ~ 14232070 (-)
XLOC_009067 NA coding downstream 33313 14203675 ~ 14212777 (-)
XLOC_009066 pnkp coding downstream 51882 14163193 ~ 14194208 (-)
XLOC_009065 si:ch211-116o3.5 coding downstream 147568 14085187 ~ 14098522 (-)
XLOC_009064 trappc6bl coding downstream 162950 14076004 ~ 14083140 (-)
XLOC_009070 dpf1 coding upstream 9185 14257232 ~ 14375571 (-)
XLOC_009071 BX957341.1 coding upstream 67307 14315354 ~ 14315470 (-)
XLOC_009072 numbl coding upstream 188112 14436159 ~ 14552101 (-)
XLOC_009073 coq8b coding upstream 306251 14554298 ~ 14589677 (-)
XLOC_009074 slc5a2 coding upstream 354473 14602520 ~ 14625373 (-)
XLOC_009063 NA non-coding downstream 181740 14062613 ~ 14064350 (-)
XLOC_009061 BX897750.1 non-coding downstream 421486 13824472 ~ 13824604 (-)
XLOC_009059 NA non-coding downstream 1700407 12516188 ~ 12545683 (-)
XLOC_009057 NA non-coding downstream 1829952 12410984 ~ 12416138 (-)
XLOC_009076 CR388387.1 non-coding upstream 387622 14635669 ~ 14635785 (-)
XLOC_009080 CR936977.1 non-coding upstream 635244 14883291 ~ 14884061 (-)
XLOC_009081 NA non-coding upstream 780165 15028212 ~ 15030391 (-)
XLOC_009083 NA non-coding upstream 1055680 15303727 ~ 15307751 (-)

Expression


Co-expression Network