XLOC_009077 (p4ha3)


Basic Information

Item Value
gene id XLOC_009077
gene name p4ha3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 14674928 ~ 14755318 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00017883
cacacacacacacacacatcaatgctGATGGCTCATCGTGGGCTGTGCGGGTTTTTTCATGTCCTGGTGAGCACCAAGGAAGAAAGAAAAGCTGTGGAATAATACAGTCTGCCCTTTACTATGTGAGATCTTTTTTTATAATCTTCCTTGTTAAGATGTGTTCATGCTTTAccctttttatagttttatacttACTTAATATGCCGGACGAATCATTCGGCGAGATGTTCACTTCGATGTTGAGCGTGAATCAGGCTGTTTCTGCAGAAAGAAAACTCATCGATCACTTAATAATATACATTGAACACGAGGCACAAAGACTGGAAGATATTAAACGGTTCTTTTCGAGAGTCACATCATTGCATGATGGGATATACAACGAGCCATCAGATCCCATAGCCAATCCAATTGCTGCATTTAAACTGGTCAAAAGACTTAAATCCGAATGGTTGAATGTTGTCCATAGCACTGAAGCTGAAGAAAACATTAAAGtCCTTAGGGAGGACTACAGGAGGATGGAAAGCAGTTTGCCCAAACTGGAGGACCTTCGGGGGGCAGCGCATGGGCTGATGAGACTTCAGGATGTGTACAATCTGCACGTAGAGAGCCTTGTGCGAGGTCACTTCCAGCAAATATCTGATCCTGTTGACTTTTACAAACTCTCTGTGTCCGATATGCTCTCCGGGGATGATTGCTTTCTTGTTGGAAAGGTGGCCTATGATTTGGAAGATTACTACCATTCTGTGCTGTGGTTTGAGGAGGCCGTTCGACTCTTCCGAGGAACCGAATGGAGTCCAGAAAATGAAGGCACGCTTGAAGATGCCCTGGACCATTTGGCTTTCTCTCATTTCAAGacagGAAACATATCCCACGCCCTCAGTCTCTCCCGGGAACTATTGCTTCATGatCCCATGAACAGAAGGGTACACTTCAATGTGGAGAAGTACGAGAAACTCCTAAATGAAAATCTACCTGCTACTAGCAGTGGTTTGACTTTGAAAAGGCCCGACGGCATTTATTTGAGAACCAGGAATGCCTATGAACAGCTCTGCCAAACCAAAGGATCTCAGcCAAAGCATTTTGAGAATCCCAGTTTGTTCTGTGACTATTTCACCAACGGCAGCCCTGCTCTATTTCTGCAGCCAATCAGACGAGAGATAATCAGCCTGCAGCCCTATGTGGTGCTCTTCCATGGCTTCGTCACCCAAGCTGAAGCCAAAAACATCAGAAAATATGCAATGCCAGGGCTCAGAAGATCAGTGGTGGCATCAGGCATGAATCAGGCCACTGCTGAATATCGCATCAGCAAGAGCGCATGGCTGAAAGAGTCGGCCCACGAGGTTGTGGGTAAGCTGGATCAACGCATCACCTTGGTAACTGGACTGAATGTGCAGCCTCCTTATGCCGAATATCTCCAGGTTGTAAATTATGGGATTGGAGGACACTATGAACCTCATTTCGATCATGCCACAtccgACTCTAGTCCATTGTACAGACTAAAAACTGGAAATCGAGTGGCTACAATCATGATATATctgAGCCCTGTGCAAGCTGGAGGATCCACAGCCTTTATCTACGCCAACTTCAGTGTTCCTGTTGTGCAGAATGCTGCTCTCTTCTGGTGGAACCTGCATAAAAATGGCCAAGGAAATGTTGATACTCTTCATGCTGGCTGTCCTGTTATTGTTGGCAATAAATGGgTTGCCAATAAGTGGGTTCATGAGTATGAACAAGAGTTCAGACGTCGATGTAGCCTTAATCCCGAGGAGTGAAAGAAGCAAGAGCCCTCAATGGTTAACATTCATCAATGACGAACATTTGCAAGTGAGGGAACAAAAAGCTGAAAACCACAGACATTATCAACAACCACATGCCTTCAAGTGAACTGCGACGGCAGCATTGTGAAGAGAGGATGATTCTCATGGATGTCTGATGGGCGCAGTTTGTGTTAAGAGAGTGGGTTGGAATGCAGCCTACAGCCTTAAGGTCAGACTGACCTCTTGTTCCTGCTTATGAAGATGAACACCAGATTGTTTGATgaaaatcaaatttaaatatgtttacaagAGTAATGAATAAAAATTAGCAATCTTGTTGTGTTCTGACAGCaaacaatgtttttctttttttattacttcACAATAGGGATAAATATCAATCAACATTTAGATGTTTGTTAGCTTTGATATACTGCATGTGTTTAAATCTCAGTGGTAATTTTGGAGGAACCCGTGTGCCTCAAAATTGTGGACTCTGCAGATGCTGCACTTTTTTTATTCCAAGAACTGACCACAAATTAGGAAACCAGGGAGCTCAAAGAAGCAGGCTGGctcatttcacaaaaaaaaaaaaaaaaaaaacaccacacgACTGCTACATCTTTGACTCCAAACGGATCTGCCTCTTGAAATCATGTGCGACTTCATAGTGTTGGTCCTGAAATAGCACAGAAGAGAAGTCTTTGCAACCACATTGGACTTGGAAACTTCAAAGTCATTCAACCTTTAAGTTGGAGTTCCATCAAGATCATGgctttttcatttttgttaaccCTATAATGCTTTTGAGGCTTCTTATTTTCAGTCTATTCATTTCACTCCACAACTCTTTTCAGAAATGGTTATATGCTTTGTATAGAATTGGCAATGTTAGGAAAATAACCATCAAGAGGAACTGTTTGACTTGCTTAATTCCCTGAAATCCCTTGATCTAATAAAGATCAGGTCAGAAAGAAGTTTTTATTTTCTCCCCGAGGTCTTCGTATTGCTGACTGATTTGTTCTTTTaaggtacagttcacccaaaaatcatttACTTATCCcaaacttgttccaaacctgtttgtctgtTCTTTAACTGGTAATCTTTGaattccatagtagaaaaaccaAATCTATGGTTTTCAATATTCTttagtatacagttaaagtcagaattattagccccccctaaattattagccccc
>TCONS_00017884
gaaggtaatgagttaattatgtACCTTATTACTTAATACCCaccctctctgtctctctctatctctctctcactcacacacacacacacacacacacacatcaatgctGATGGCTCATCGTGGGCTGTGCGGGTTTTTTCATGTCCTGttttatacttACTTAATATGCCGGACGAATCATTCGGCGAGATGTTCACTTCGATGTTGAGCGTGAATCAGGCTGTTTCTGCAGAAAGAAAACTCATCGATCACTTAATAATATACATTGAACACGAGGCACAAAGACTGGAAGATATTAAACGGTTCTTTTCGAGAGTCACATCATTGCATGATGGGATATACAACGAGCCATCAGATCCCATAGCCAATCCAATTGCTGCATTTAAACTGGTCAAAAGACTTAAATCCGAATGGTTGAATGTTGTCCATAGCACTGAAGCTGAAGAAAACATTAAAGtCCTTAGGGAGGACTACAGGAGGATGGAAAGCAGTTTGCCCAAACTGGAGGACCTTCGGGGGGCAGCGCATGGGCTGATGAGACTTCAGGATGTGTACAATCTGCACGTAGAGAGCCTTGTGCGAGGTCACTTCCAGCAAATATCTGATCCTGTTGACTTTTACAAACTCTCTGTGTCCGATATGCTCTCCGGGGATGATTGCTTTCTTGTTGGAAAGGTGGCCTATGATTTGGAAGATTACTACCATTCTGTGCTGTGGTTTGAGGAGGCCGTTCGACTCTTCCGAGGAACCGAATGGAGTCCAGAAAATGAAGGCACGCTTGAAGATGCCCTGGACCATTTGGCTTTCTCTCATTTCAAGacagGAAACATATCCCACGCCCTCAGTCTCTCCCGGGAACTATTGCTTCATGatCCCATGAACAGAAGGGTACACTTCAATGTGGAGAAGTACGAGAAACTCCTAAATGAAAATCTACCTGCTACTAGCAGTGGTTTGACTTTGAAAAGGCCCGACGGCATTTATTTGAGAACCAGGAATGCCTATGAACAGCTCTGCCAAACCAAAGGATCTCAGcCAAAGCATTTTGAGAATCCCAGTTTGTTCTGTGACTATTTCACCAACGGCAGCCCTGCTCTATTTCTGCAGCCAATCAGACGAGAGATAATCAGCCTGCAGCCCTATGTGGTGCTCTTCCATGGCTTCGTCACCCAAGCTGAAGCCAAAAACATCAGAAAATATGCAATGCCAGGGCTCAGAAGATCAGTGGTGGCATCAGGCATGAATCAGGCCACTGCTGAATATCGCATCAGCAAGAGCGCATGGCTGAAAGAGTCGGCCCACGAGGTTGTGGGTAAGCTGGATCAACGCATCACCTTGGTAACTGGACTGAATGTGCAGCCTCCTTATGCCGAATATCTCCAGGTTGTAAATTATGGGATTGGAGGACACTATGAACCTCATTTCGATCATGCCACAtccgACTCTAGTCCATTGTACAGACTAAAAACTGGAAATCGAGTGGCTACAATCATGATATATctgAGCCCTGTGCAAGCTGGAGGATCCACAGCCTTTATCTACGCCAACTTCAGTGTTCCTGTTGTGCAGAATGCTGCTCTCTTCTGGTGGAACCTGCATAAAAATGGCCAAGGAAATGTTGATACTCTTCATGCTGGCTGTCCTGTTATTGTTGGCAATAAATGGgTTGCCAATAAGTGGGTTCATGAGTATGAACAAGAGTTCAGACGTCGATGTAGCCTTAATCCCGAGGAGTGA
>TCONS_00017885
AGCGCATGGCTGAAAGAGTCGGCCCACGAGGTTGTGGGTAAGCTGGATCAACGCATCACCTTGGTAACTGGACTGAATGTGCAGCCTCCTTATGCCGAATATCTCCAGGTTGTAAATTATGGGATTGGAGGACACTATGAACCTCATTTCGATCATGCCACAtccgACTCTAGTCCATTGTACAGACTAAAAACTGGAAATCGAGTGGCTACAATCATGATATATctgAGCCCTGTGCAAGCTGGAGGATCCACAGCCTTTATCTACGCCAACTTCAGTGTTCCTGTTGTGCAGAATGCTGCTCTCTTCTGGTGGAACCTGCATAAAAATGGCCAAGGAAATGTTGATACTCTTCATGCTGGCTGTCCTGTTATTGTTGGCAATAAATGGggtatgtttaaaaacaaaaactttcatAAAGTAACCTGCACGGcagttacaaacatagttcacccaaagattatCATTCTGTCATCATCTACTCATTCTCCACTTGTTCAAATCctgtttaagtttttttcttATGTTCAACACAATAGAACATATACTGAAGAATGGTGGAAACCAttgttgtatattttgtattttgatttgtacaatggatgtcaatggctcctgtttttcaacattcttcagaaaatcttgttttgtttgcatccaaagaaagaaacccataaaagtttagaatta

Function

symbol description
p4ha3 Predicted to enable procollagen-proline 4-dioxygenase activity. Predicted to be involved in peptidyl-proline hydroxylation to 4-hydroxy-L-proline. Predicted to be located in endoplasmic reticulum lumen and membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum. Is expressed in several structures, including alar plate midbrain region; muscle; optic tectum; retina; and yolk syncytial layer.

GO:

id name namespace
GO:0018401 peptidyl-proline hydroxylation to 4-hydroxy-L-proline biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen molecular_function
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen molecular_function
GO:0005506 iron ion binding molecular_function
GO:0016491 oxidoreductase activity molecular_function
GO:0004656 procollagen-proline 4-dioxygenase activity molecular_function
GO:0031418 L-ascorbic acid binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-041010-4 Predicted to enable procollagen-proline 4-dioxygenase activity. Predicted to be involved in peptidyl-proline hydroxylation to 4-hydroxy-L-proline. Predicted to be located in endoplasmic reticulum lumen and membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum. Is expressed in several structures, including alar plate midbrain region; muscle; optic tectum; retina; and yolk syncytial layer.

Ensembl:

ensembl_id ENSDARG00000103692

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00017883 False 2964 mRNA 0.42 13 14674928 14755236
TCONS_00017884 False 1737 mRNA 0.46 14 14676120 14755318
TCONS_00017885 True 690 lncRNA 0.40 4 14680055 14696775

Neighbor

gene id symbol gene type direction distance location
XLOC_009075 si:dkey-260j18.2 coding downstream 32742 14630690 ~ 14642186 (-)
XLOC_009076 CR388387.1 coding downstream 39143 14635669 ~ 14635785 (-)
XLOC_009074 slc5a2 coding downstream 49555 14602520 ~ 14625373 (-)
XLOC_009073 coq8b coding downstream 85251 14554298 ~ 14589677 (-)
XLOC_009072 numbl coding downstream 122827 14436159 ~ 14552101 (-)
XLOC_009078 or129-1 coding upstream 21536 14776854 ~ 14780602 (-)
XLOC_009079 si:ch211-24o8.4 coding upstream 120408 14875726 ~ 14884332 (-)
XLOC_009080 CR936977.1 coding upstream 127973 14883291 ~ 14884061 (-)
XLOC_009081 NA coding upstream 272894 15028212 ~ 15030391 (-)
XLOC_009082 rrp8 coding upstream 465805 15221123 ~ 15230264 (-)
XLOC_009071 BX957341.1 non-coding downstream 359458 14315354 ~ 14315470 (-)
XLOC_009069 NA non-coding downstream 426881 14246090 ~ 14248047 (-)
XLOC_009068 NA non-coding downstream 442858 14229248 ~ 14232070 (-)
XLOC_009063 NA non-coding downstream 610578 14062613 ~ 14064350 (-)
XLOC_009083 NA non-coding upstream 548409 15303727 ~ 15307751 (-)
XLOC_009085 NA non-coding upstream 618741 15374059 ~ 15375518 (-)
XLOC_009086 NA non-coding upstream 626170 15381488 ~ 15387422 (-)

Expression


Co-expression Network