CI01000037_03224616_03371497 (MYO16)


Basic Information

Item Value
gene id CI01000037_03224616_03371497
gene name MYO16
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000037
NCBI id null
chromosome length 4612320
location 3224616 ~ 3371497 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000037_03224616_03371497.mRNA
TGTTTTCAGCTATGTAACGTGTTCAGGCAGAACATGGAGATAGACCAGTGTCTGCTGGAGTCTCTGCCGTTGGGCCAGCGTCAGAGGCTGGTCAGACGCATGCGTTGCGAGCAGCTGCGGGTCTACTACGAGCGTGAACGGACACTACAGAAGCAAAGCTTCCCCAAGCCCCGGGCCACCAACCGCAAAAAGCAAAGAATCAGCTTCACTCTTTCAGACGTCATCCAGGATGCCATTATAAGACACGATGACAAAGAGGTGCTGAGGCTGCTGAAGGAGGGAGCTGACCTGAACACAGTGATTTCCTCAGGAGGATCTCTGCTCCATCTGTGTGCCCGCCATGACAATGTGTTCGCAGCAGAGATTTTGATAGAGAAGGGACTGAATGTCAACCTGCAGGATGAGGACCTCTGGACTGCCCTGCATGTGGCCTGCGCCTGCGATCACGCAGATATGGTGCTGCTGCTACTGCTGGCTGGAGTCAACGTGCTCCTGCAGGATGTGAACGGGAACATTCCACTTGACTACGCCACAGAAGGGACGGAAACCAGCTACATCCTCATTAGGCACCTGGAGGAGAATGGAGTGGACATGAGCTCTATGCACCAGATGAAGACCCAGCGCTCATCCACCATGATGTCTGATGTGAGGCAGCTGGTCAGCAGCGGGGGCAGTGTCAATCAACAAAATGATGACGGGGTCACGCTGCTACACATCGCCAGTGCCAGTGGTTATAAGGAGGTTGTGTCAGTGCTGCTGGAGAATGGTGCAGATGTCCAGGTGTCTGACAACAGCTACTGGACACCCTTACATCTGGCTGCCAAATATGGGCAGACCAACATTGTGAGCCAGCTGTTGAAGCACAAAGCAGATCCTACTCTACTGAACTGCAACCAGGACAAGCCCTCAGACATAGCTGCTACTGAGCAGATTGCAGATATGCTGATGAGAGCAGAGGAATTCTGGGTACAGAGACAGACAGACCCCTCGGCCCCGCTTCCACAATCGGAAGAGCACTGCACAGAGTCCAACCAAGACAACAATCTGCCTGTAAAAAAACTGGCTACTATGGCTCTATCCATCTCTAGGAGGGACAGTTTGTTGGAGAAGGAGGCCATGTTCAGGGACTCAGGAGGAGCTCTGACACAGCAGCCTTCACTTGATAACGGCCTGGATGGACCATATCCCAGCGCTGCAGGAAAACTGGAGCAGGTAAAACTGATGCCTCCTGCCCCTAATGATGACCTTGCATCCCTCAGCGAGCTCACGGATAGCAGCCTGCTCTACGAGATGCAGAAGCGTTTCGCCAATGACCAGATATATACCTACATTGGACACATTCTTCTCCTCATTAACCCTTACAAGGACCTGCCTATCTACTCTAATCTCGTCAGTCAGTTGTATCTGAGCTCCAGTGGTCGTCTGTGTTCCTCTCTCCCGCCTCATATCTTCTCTTCAGCTGAGCGCGCTTATCACATGATGCTGCAGGAGCGACGCCCACAGTGTTTCATCATCAGGTGCCGCCCACTGACATGCAGAACACTGCCACACTTGTCATTCATTCTTCACATTTTCATATGCCCGCAGGCCAGGCAGAGGAGAGAGATCTTTAGTCTTGAGACAAGGCTTTTGATGGTGAATGTGATCTTGGAAGCCTTTGGCCATGCTAAGACTCAGATGAACTCCTCAGCAAGCCGTTTCATCAAGCTGATCTCACTGCAGTACTGTGAGAAGAGAAAGACTCTACTCAGAGGTAGCCGTCTGTACACTTATATGCTGGAGAAGTCGAGGGTCATCTGCATGCCACCACATCAGCAGAACTTTAACATCTTCTACCTGATGGCTGAGGGGCTTTCAGCAGAGGAGAAGAGTAATCTATATCTAAACAATGTCTTAGCCCACAGGTGTCTGAGCACAGCGGCTCCCGGTGAAACTCCTGCAGTAGCTACCGCGTGTCCTCAGAGCAGAGAGAAGCTCTCGGCCCTTAAACAGGCACTGCGTGCGCTCGGCTTCAATAGACTGGAGGTGGAGAATTTGTTTGTGGTCCTCTCTGCGCTGCTGCATTTGGGAGATCTGCGCTTCACCGCCCTGACAGACGCTGACACTGCGTTTGTGTCCGACTTGCAGCTGCTAGACAGAGTGGCTGGGATGTTGCAAGTTAGCTCTGAGGATCTAGGCTCTGCCCTCACCTCTGATGTGCAGTGTTTCAAAGGTGATGTCATAACAAGGCGCCACACAGTTGAAATGTCCAACCATCACAGAGACCTCTTGGCCAAAGCTCTGTACGGACGACTCTTCAGCTTCTTGGTCAATAACATTAACTTTTACCTCCAAGGTCATGAAGAAATTATTGGAGATCCTGCCCTTGAGATAAGCGTCTTGGACATATTTGGCTTTGAGGAATTCCAGCGTAATGGTTATGAACAGCTGTGCATTAACATGGTAAATGAGCGGATCCGGCAGTACACAGCAGAGGTGCTCTTCCAGCAAGAGCAGCAAGAATGTCTGCAGGAGGGGGTTGCCATGGAGACGCTACGCTCCCTCGGCAACCAGACAGCAGTGCTGGACTTCTTCTTCCAGAAGCCTCAGGGTTTGCTGTGCATCATTGATGAGGAGAGTCAGTCCCTCAGGCCATGTGAAGTCAACCTTTATAAACGACTGCAGATACAGCTGGATTCCTCCTGTACGGACGCTGTCTCCCTCACAACCAAAGATGGCAACGGGAACCCCCCACCTAAAGACCAGGGGCCATCATTTACGGTTACTCACTACGCTGGCAAGATGACCTATGACCTGACGGGCTCATTGGACAGGAACAAGGATGTTCTTCCCCAAAACATCTTGTTTGTTATGAAAACAAGTGAGAACGTGCTCATCCATCAAATGTTCCAGTGTAAGCTGACTCAGACGGGCTCATTGGTTCCCCACCACCAGCGGATGAAGCTTCGCGGGCCCAAAGGCACTTTGCTTAACAAGAGCACTACACTAAATCCTGCCAGAGATGCCAAGAAATATGTGGAACTGAACAAGCTCCTGAAGAAGAAGGGAGCAACGTCCTTCCTGCAGCGGCTGGAGCGCTGTGGACCTGTCACTGTGGCTGTGCAGCTCAGGAACTCTCTGTGTGAGATCACCAGTAAGCTGCAAGCATGTACGCCCCACTTTGTCCAGTGCGTCAGGCCCAACAACGTTGGAAAGCCTGATGTGTTTGACAGCTTCCACGTGTCCTCACAGCTCCAGTACGTGGGGGTTCTGGAGATGGTCCGCATGATCCGGTATGGATACCCAGTCCGACTGTCTTTTACCAGCTTCCTGAGCAGATACAGAGAGCTGGTGGACACTATCCTCATTGACAAGAAGAAAGCATCCGCAGAGGAGAAGTGCCGCCACATTCTGCAGCATTGTAAACTCCAGGGCTGGCAGATGGGCAGCAGTAAGGTTTTTTTGAGATACTGGCAGGCTGATCACCTTAATGACCGTTGCCATCAGTTGCACAGGAAGATTATTATCTGTCAGAAAGTGGTGCGTGGCTGGTTGGCCAGACAGCAGGTGTGTCGCAAGCTCACTTCTCGGCAGCAGGAGCAGTGCAATGTCCATCGGTTCCTGCAGGGAGCAGAGGACTTGGGTATGCATGCTTACGACAGCTTGGTCATCCAAAATGCAGCTGATATCGCACGAGAAAATGACCGCCTCCGGGGTCACATCAGCGCTCCACCACTGGGCGAGCGACCGGAACCTGTGGGCAAAGAAGAAGACTCGCCAAAGAGGGTTGTTGAAAAAATTGGGAGGGTCAATGATGTGGCAGGCCGTGGGGGGAACCGACCACTCCGGCATTTCCGCTCCAGCTCTGTGCCTCTCCCTCTGGTAATGGACAGCTTGGTACACTCCAGCATTGGGACATCAATCAAAGCAGCCCTTCAGTCTGCGCCACACTCCACTGAGGAGGGGAATGGAGGGAACCTCTCCTCCCCACGAAAACAACCTCCTCCCAAACCCAAACGAGACCCAAATACACGTCTGAGTGCATCATATGAGGCAGTGAGTGCAGGGCTGAGTATTGCACCCAAAGACAGCCCTGCTGAGGGTCAAGCCTCACCGTCTGGAAGCCCACCAAAAAACCAGCTGTCTCCTTCTGATCCTCTCTCTAAACCACGGCCTCACAGTGATGACTACAGCACCATGAAGAAGATCCCACCCCCAAAGCCTAAACGCAGCCCTAATACCAAACTGACGGGCTCCTACGAGGAGATCTCTATACCCTCCCCTGCACGCCCCACAGACATGAAACTTGTCAGCCTGGTACGAGGCGGCCACTGCTTGGGCCTCATCCAGCGAGCAGCGTCTGCAGATGGCCCCCATTCTTCTGTACTAAGCCTCTACCCTTGCCAGGACGAGGAGGATGTGTATATCGAGATGGTAGGGGCCTCACGAGCCCTCAGCCTGGCTGACTCCCACAGTCCAGAGCTGAGTGAGGCGGTATACGAGGAGATGAAGTACTTCCCACATGACGAGGTGGGGTCAACTCCGGTGGTCAAGCCTGAAGCTGTCAATCCCACCACCACTACCCTACCTGCCCCAGTGCTGGAAGTCAAGAGGCCTGTGACCCTGATGGAGCACCCCGGCACTCTCGGGGGAAAGCAGCTGGGCAAGGATGGGACAGCTTGTGACATTCCAGCTCCATTCCCCAACCTCCTTCCACACCGTCCCCCACTTCTGGTCTTCCCTCCGTCCCCTGTCACCTGCTCACCCGCCTCGGATGAGTCCCCCCTTACCCCTCTTGAGGTGAAGAAGCTGCCGGTGTTTGAAACCAACCTTAACTACACCAGCCAGGATGGGGGGAGCCCACTCTCACCTCAGTACACCCGGCAAAGGGCTGATTCCTCACCAAGTCTTTCTGTCTTAATGCCAGACAAGTCCACGCCACCCTTGACTCCTCCCCCTCCGCCCCCTCCGGCAGTACTTCCACCTCCCTATCGCCCCCCTTCTCACTTCCCCTTCCCCCCTGAGGCAAACTTCTTGGCCCTGACCCGTGCAGCTTCTGTGGCTAGCACCGATTCCCCCAAAGTCTCCCATAAAATGGCACACGGTCTGGCAGAGACGCCTTCAAGCAGTTCCAAGCCTCCCTTCTCACCAGTGAAGACCTCACGACCAGAGCCCCGCAGAGCTCACTCCTGCTCCTCCTCGCCTCTGCTCTTCAACCCTGCCAATGGGAGACCCCTCACTAGTCCCCTAGATGAGCTAAACACCATTTTCAGCTCAGGGCGCAGCCTACTCCGCAAGTCCACTACAGGAAGAAAGATCAGAGACAGCGGACTCTCAAATTCCAACATTAACCTGCCAGGTCGAGAGGATCAAGGCCCAATCTCCCCGTCGTCACAGTTACAGGATAAAAACGCCAACAACCACACCTCTCCCAACTCTTCAAATCCAGCCCCCGTTGAGAACGGCAACCAGATCTCCAATGGT

Function

symbol description
myo16 Predicted to enable actin filament binding activity and microfilament motor activity. Predicted to be involved in actin filament organization and vesicle transport along actin filament. Predicted to be part of myosin complex. Predicted to be active in several cellular components, including actin cytoskeleton; actin-based cell projection; and vesicle. Is expressed in brain; central nervous system; diencephalon; spinal cord; and tegmentum. Orthologous to human MYO16 (myosin XVI).

GO:

id name namespace
GO:0003779 actin binding molecular_function

KEGG:

id description
K17481 MYO16; myosin XVI

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000037_03224616_03371497.mRNA True 5463 mRNA 0.54 32 3224616 3371497

Neighbor

gene id symbol gene type direction distance location
CI01000037_03126487_03134212 TNFSF13B coding upstream 89395 3126023 ~ 3135221 (+)
CI01000037_03120937_03121997 ABHD13 coding upstream 102594 3120937 ~ 3122022 (+)
CI01000037_03102630_03108094 NA coding upstream 115600 3102630 ~ 3109016 (+)
CI01000037_02965392_02966406 FAM155A coding upstream 258183 2965392 ~ 2966433 (+)
CI01000037_02909777_02910445 NA coding upstream 314127 2909600 ~ 2910489 (+)
CI01000037_03716200_03741974 NA coding downstream 344200 3715697 ~ 3743023 (+)
CI01000037_03761579_03791584 NA coding downstream 390082 3761579 ~ 3792055 (+)
CI01000037_03804670_03806154 NA coding downstream 432480 3803977 ~ 3806468 (+)
CI01000037_03811261_03823037 CARKD coding downstream 439764 3811261 ~ 3823115 (+)
CI01000037_03824405_03854894 ANKRD10B coding downstream 452711 3824208 ~ 3855194 (+)
G176361 NA non-coding upstream 361247 2863024 ~ 2863369 (+)
G176357 NA non-coding upstream 371890 2852378 ~ 2852726 (+)
G176355 NA non-coding upstream 374690 2849609 ~ 2849926 (+)
G176328 NA non-coding upstream 398309 2825982 ~ 2826307 (+)
G176323 NA non-coding upstream 401514 2822713 ~ 2823102 (+)
G176466 NA non-coding downstream 98005 3469502 ~ 3469710 (+)
G176472 NA non-coding downstream 106411 3477908 ~ 3478177 (+)
G176475 NA non-coding downstream 111342 3482839 ~ 3483057 (+)
G176494 NA non-coding downstream 133210 3504707 ~ 3504925 (+)
G176501 NA non-coding downstream 163728 3535225 ~ 3535554 (+)
G176377 NA other upstream 136648 2976862 ~ 3087968 (+)
G176346 NA other upstream 384563 2839760 ~ 2840053 (+)
CI01000037_01965864_01966433 COA5, CB064 other upstream 1254225 1965603 ~ 1966435 (+)
G174949 NA other upstream 1610342 1613876 ~ 1614274 (+)
CI01000037_04213179_04218057 NA other downstream 841786 4212907 ~ 4218305 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_036951 myo16 coding NC_007120.7 CM002893.2 7909490 ~ 8133535 (+)