G175004


Basic Information

Item Value
gene id G175004
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000037
NCBI id null
chromosome length 4612320
location 1762794 ~ 1780869 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU198804
ATGATGCCAAAAAGGCAACACATGGAGCAGACGACAGACGGGACCACCTCATAGCGCCGTTCAATGTCCTCATCACAGCTGAACAGACGCTCTGGACTGCCATCCTGAGAGGGTGGGGAGAGCTTAAAGGCCAGAATCCGGGCAGTGGACGTCATGCTGTCAGTGTGTTGTAACGTATCTTTACGGGAGCGAAGGAAACAGGGAAAGTGGGGTCATGTGGAAGGTAAAGGGTGCAGAGAAGGTTCCCATCCACAACAATTCACCGTTGTGACGGCTCGAGATCAGTGTTTTTAACTGCTTACACAAAGCGCTGATAACTCAGTTTTAGCATCCTTTGTGGCGAAGGTTTTTCCCATTCCGAAGCATTCAGAATCCGGTTTGTGATCTAACAAGACAACTGGTGTGTCACGATGTTAAGCCTATAGTATGGAACTGGTTGACATAATTTGTTTAAACAAGTCCAGATGCTTTCAAACTGATTCGGGATCATGATAAACCTGCCTTTATAACATCCCTTCGGATTTCCTTTCTTTCTAGTTTATATCTGATGGCACTCAGTGTTTTCATTTTGATTCACATGCT

Function

NR:

description
Tc1-like transporase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU198804 True 582 lncRNA 0.46 2 1762794 1780869

Neighbor

gene id symbol gene type direction distance location
CI01000037_01739245_01747048 DES, DESMA coding upstream 15414 1739148 ~ 1747380 (+)
CI01000037_01690717_01697406 DNAJB2 coding upstream 65000 1690717 ~ 1697794 (+)
CI01000037_01685225_01686624 NA coding upstream 76056 1685225 ~ 1686738 (+)
CI01000037_01674415_01677266 TBA1A, TUBA1A.S, TUBA8L4, TUBA1A, TUBA8L3, TBA, TUBA4A coding upstream 85489 1674093 ~ 1677407 (+)
CI01000037_01670886_01672687 TBA1A, TUBA1C, TUBA1B.L, TUBA8L3, TUBA4A, TUBA3E.L coding upstream 89649 1670886 ~ 1673145 (+)
CI01000037_01788114_01805399 BIN1 coding downstream 7245 1788114 ~ 1805405 (+)
CI01000037_01807429_01814912 NA coding downstream 26560 1807429 ~ 1815500 (+)
CI01000037_01856899_01858932 NA coding downstream 76030 1856899 ~ 1859007 (+)
CI01000037_01863914_01867331 MITD1 coding downstream 83045 1863914 ~ 1867436 (+)
CI01000037_01873612_01880555 KIAA1211L coding downstream 92743 1873612 ~ 1880555 (+)
G175003 NA non-coding upstream 7612 1751814 ~ 1755182 (+)
G174949 NA non-coding upstream 148643 1613876 ~ 1614274 (+)
G174916 NA non-coding upstream 192315 1569917 ~ 1570479 (+)
G174900 NA non-coding upstream 304142 1396347 ~ 1458652 (+)
G174828 NA non-coding upstream 477811 1241797 ~ 1284983 (+)
G175641 NA non-coding downstream 250677 2031546 ~ 2060079 (+)
G175670 NA non-coding downstream 283303 2064172 ~ 2064536 (+)
G175674 NA non-coding downstream 292559 2073428 ~ 2073640 (+)
G175689 NA non-coding downstream 358720 2139589 ~ 2139812 (+)
G175693 NA non-coding downstream 362082 2142951 ~ 2143263 (+)
CI01000037_00987906_00988350 NA other upstream 773035 987859 ~ 989246 (+)
CI01000037_00228809_00230442 NA other upstream 1532398 228809 ~ 230730 (+)
CI01000037_01965864_01966433 COA5, CB064 other downstream 184873 1965603 ~ 1966435 (+)
G176346 NA other downstream 1058891 2839760 ~ 2840053 (+)
G176377 NA other downstream 1195993 2976862 ~ 3087968 (+)
CI01000037_04213179_04218057 NA other downstream 2432414 4212907 ~ 4218305 (+)

Expression


Co-expression Network