CI01000039_08131887_08142840 (GC3, OLGC3, GUCY2D, OLGC5, GUCY2F)


Basic Information

Item Value
gene id CI01000039_08131887_08142840
gene name GC3, OLGC3, GUCY2D, OLGC5, GUCY2F
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000039
NCBI id null
chromosome length 8355537
location 8130840 ~ 8145112 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000039_08131887_08142840.mRNA
AGCTATAAAAACTTTCCACTATTCTGACTATATGAAGAGGGCTGTAATGAAGATAGCTGTAATTTTTAATGAGCGGCTTAATATCCATAAGAAAGAACACAAAATGTGAACACAAGCAGTAATTTTCAGCAGCCAATGATCAACTATAATAATAACACTGGTGCATTTACAGTATATAACAGGACATCCCCTTTGAACCAATAGCAGAAAGCAGCCTTAACAAATCTTATTAGCAACTAGGAATATCTAGAGATTTAAAATCTCTATGAGATGGCAGCCTTTAGTGTGTACATGTAGCTGACATGACCATATTAACATACCACAATAGTTATATTAGCTTTGAAGACTAATTTTACATTTAAATACTAAAAGTGAAATATTTAGGCAGCTTGTATAAGGCCCAAAAATGAAATTCCTTTAGCTGTGGTGTGCCAGTTATCCAATATCACAGACAGTAAATCATTCAAACACAGGAGTAGCGTGAGTCTGACAGCAAGGTCCCGTGCAATCCGCTGTAATCCTGAGTTATTTCAGTGCTGGCTAAAGGTCCAAAGAAAGAAAGAAAGCCAGACGGTTAAGATGTGAGGGGCAGAGAGGAAAGTTATACAGAAGTAATACAGGATGCTAAAGAAATGAAAGGTCGAAGAATAATGAAAAATCAAAGAAGAGAAGACTTCTGACAGGTCAGTAGATACAGAGCGATGATGGTGTAAAGAGATAAGGTTGATTAAGATTAAGATTGATTAAGCCTCACGTTATTGGGCAGTTATTATGGCCAGGGCTAATGAAGGCAGAGCTCTTTAATTGTAATCTGCTTTCTGCTTGCTGAGCAATGGATAGAGACAGAGAGAGGGAGGAATGGGCAGACAGCCTGGTACAAGTTGTGTGACATTTCACCCCAGCTCCACCTTTAAACACAGATGGCACATGAGTCAGGTGAGGTTGTGGCTGATCAGCTGACCAGACCCAGCCCACATTCAGAGGTCAGATCTCTAGGATCACAGGGGAAAGGACAGTATGAGAAGAGGGTTGAAGAAGACTTTAATATCCTGCTTCCTGTTTCTCAGTGTCACTTCGGTCACCAAAAAACTCTTATTAGCAAACCAAATAGCGTTTAATTGAGAATTGTCACCCTGAAAAGAAGTAATAGATCATTCTGTTAAAAGAAATAAATATGAATATATAAATATATTTCATCCTTGATAAAAACATCATCCAGGCTGGAACCCTACTGCCCCAGAGTAAAAAATAAAAAAGTAATTTGCAAGATTAAAGTTTAAAATAAGAAATTAAGTCACAAAAAAGTTGCAAAAGCAATATATAAAGTCATAATTCTTTTTAGGTGGATATGGGCTTTTCTGTGCATCATGATCTGCTTTTACTTTAATTTTTTATTCTTTTTTTTTATTTACACTGCTTTACATGTTTTTTTATGTTTTTGAAATAAGTCTCTTATGCTCACTGAGGCATTTATTTGTAATTTATTCCTTTATAATAGAATTATTAATATATATTATAGATATAATATGCCATTACTCCAGTCGTCAGTGTCACATGATTCTTCAGAAATCATTCTAATATGCTGATTTGCTGCTCAGGAAACATTTCTTATTATGATCAATGTTGAAAACAGCTGTTCTGCTTAATATTTTTGTGGAATCCATGATACATTTTTCAAGGATTATTTGATGAATATAAAATTCAAAAGAACAGCATTTATTTGAAAATCATTCGCTGAATAAAATATTAATTTCTTTTAAAAAAAAATCTTACTGACCCCCAACTTTTGAACCGTAGTGTAGATCTGTTGACCTTGGTACCATAATGATTCATATGACTCTGATGCTGATGTTGGAGCCACTGTTACACTCTCGCATCACTAATAAATATAGTAAACGATGGTTAAAAGAACTGCAATGTATTAATATTCTAATTATATGAAGGAAGACTAACCTTTTCTGTTCTGTTTCTGTCCCTTGTCTTTTCCCCTCTCTCCCTCTCTTTCACCAAACCTTTATTGTTTCTCTCAAACACAACTGCACACATTTGCTCCATCTCTATAACAGACAGTGATGGCTGGTTATTGTGCAGTAGTTTTGGGCTAGTGCCCCTCAGTGGGTAGAACCCAAATCGAGAGCTGGGTGTTTTGAGCGTGTTTTTTAATCAGCCTTCATACTGTTGCTGACAAAATATTCACATAAACACACAACATCTCTCAGTGCCACCTTTTTTTTTTTCATTGTCCCTGACATTTAACAGTAGAAAAAAAAAAATGGAAATGGATGACCACAGAAACTCTAGCTTTCTTTGCCAGTCCCACCACCCACGATGGCAACCACAGTCTTCAGCAGGGAAGCAACGACGAAAACCAACCTCAAAGCGAAAAGCAAGAAGCCCTGATGACCCAGCGAGCCCAGTGTCCTCGACCCCAGTGCTACGCAGCCACAGCTGGTGGGGGAACTGTTTGCTCCTTCCTCTAGTCATGCTATCATACTTGCCCTGTGAGGCCTGGGGCACCACCTTCAAAATTGCCATCGTAGGACCGTGGGCGTGCGACCCTATGTACTCCAAATCCCTGCCAGACCTGGCTGCCCGATTAGCCATTAGCCGCATCAACAAAGACCCCGACCTCAACAAAGGCTACTGGTATGATTACACACTAATTAATGAGGATTGCTCGAGCTCGAGAGGCCTGGCACGCTTTGCCGAGCTGGAGGGTTACGGTTCGGCCTTTCTTGGACCGGCAAACCCTGGCTACTGCACTGCTGCTGCACTGCTGGCAAAGAATTGGAACAAGGGTATCCTGTCCTGGGCTTGCCTGAAGGCTGACATGAATGAGGAAATGTATCCCACCTTTCTGCGGCCGCTCCCGTTGTCTTCTCGTGTGCTCTTCTCTGTGCTGCGCTTTTTCCGCTGGGCACATGTTGGGATTATAACAGCGGAGAACGACATGTGGGAAGCGACTGGGCATGAACTTGCAGCATCCCTGCGTGCTCTTGGTCTGCCAGTTGGCACGGTTGTTACCATGGAAGCGGACAAGGAAGGACCACGACGAGCCCTAAAGGCAATACGAGAGACAGATCGCGTGAGGGTTGTCATCATGTGCATGCACTCTGTTCTGATTGGTGGAGAGGAACAGTATCAGTTGCTAACCACAGCAATGGACATGAGATTGATTGACAGAGGATACATCTTCATTCCATATGACACACTGCTGTATTCATTGCCATATAAAAATGTGAACTATCCAGTCCTGGCCAATGACACCAAACTGCGACGAGCATACGATGGGGTCTTAACAATAACCATGGACCAAGGGGAACAAAACTTCTATGAGGCCTTTAATGCAGCACAGGGATCCTATGACATCCGCAGCAGCACACCAGCTGAAGAGGTTTCTCCATTTTTTGGGACCATCTATAACATGATCTATTACACAGCCATGGCTGCAGAGCAGAGTCGTGCTGCGAGTGGAGGGCGCTGGGTATCTGGTGATACACTGGCTAAAAACGACGGTGGATTTGAATTCAATGGCTTTAACCAACGGATATCAGCAGGTACTGATGGAGAAGGAATGCAGGCACGCTACGCTGTCCTGGATTCAGATGGCTCTGGCTCCAGCCTACACCGCACGCATGCCCTGGAAGCACCACACACTTATGGAAAATATGGAGGGTTGAAGTACTTGGGAAAATCGATTCATTTTGCTGGAGCATCTCCGAGAAGTGACTCAAACTGCTGGTTCAGCCCTTATATCGCTTGTAGTGGAGGCATAGATGGAGTGACCCTTTTATTCCTCCTCTTGTTCATTGTGTTGGTAGGTGGAGCAGGTGTCCTTTTTCTCCATGTAAGGAAACATGGTCAGGTGGGGATATTAGGAGCATTTGGTGGAGGAGGAGTCGGAAGTCCCACTAAGATAGTGCTGACACTGGATGACTTGGTCTTCATCAATACCACACTCAGCAGGAGGAAGCTGAATGAGGAGAGTATGGTGAAGAGTCAACTAGATGTTAAAACCCCAGGCCACTCAGTTTCTGGTCGCAGTTACATTACGTCAACTCCTGAAACGTCCAACGTTGCTGTATTTGAGTTTAAGAATGTGAACAAGGGAAAGAAGACAAATATAATTGACTCAATGTTAAGGATGCTGGAGCAGTACTCCTCAAACCTGGAGGATCTGATCCGAGAGAGGACTGAAGAACTAGAGGTAGAGCGTCAGAAAACTGATGCTCTCCTAGCTCAGATGCTGCCCAAGTCTGTGGCCTTGGCATTAAAGACAGGGAAGCCAGTGAAACCGGAGCACTTTTCAGACGTCACACTATATTTCAGTGATATTGTGGGTTTCACCACCATCTCTGCTCTGAGTGAACCTATTGAAGTGGTCGATCTGCTTAACGACCTCTACACACTCTTTGATGGGATCATAGCAATCCACGATGTCTACAAGGTTGAGACTATTGGTGATGCATACATGGTGGCATCAGGGGTTCCAAACCGTAATGGTAACCGGCATGCAGCAGAGATGGCCAACATGTCTCTGGACATTCTACACTGCATCGGAACATTTCAAATGAGGCACATGCCTGACGTCAAAGTCAAAATCCGCATTGGACTCCATTCTGGTCCAGTGGTGGCAGGTGTAGTTGGGTTGAAGATGCCTCGGTACTGTCTGTTCGGGGACACAGTAAACACAGCCTCCCGAATGGAATCCACAGGATTGCGTGAGTACACCTAAAACTTTTGTGTTGTATATGTATATACATCAGCACGTGTCTGACACTAACAATGTAAGCTTTTGTCACTGTCTCTGAAGTCGTGATTCCAGGAATTTGTCTTTGGCTAAGGATCAGTAGTTAGTACTTTGTGTGTGTGTGTGCTGATCAGTGAGTGCATGTCAGTGAGAAGCTCAGAGGGCTTAAAGTGCAGAGTTCCCTGTAAGCTCTTAAGAGTATAAGCCAAATTAGAAAGAAAATTCTGCTTTAAAGCTAATGTCGTCTTAGAACTCAGCCTCCGCTATCACCCTGAACTGTCTCACCTTTAATCAGACCTTCTGTCACATTTATCCAAGAACATTTACTTCACATGTTTCATGCTGAAGAACATGGAACAAATGTGTGAAACATGATTAAAGATTTGCTAATGCAATGCCATTCAAAAGATTTTAGCTAAAAAAAGAAAAGAAAAAAGAAAAGACATCAATACTTTTATTAGGCAACGATGCATTCAACTTATCAAAAGTGAAAGCGAAGTGAATGTTACAAAAGATTTCTGTTTCAAAAAATGCTGTTTACATTTAAAAAAATGTATTACAGTTTCCACCAAAATATTAAGCAGCACAACTGTTTTCAACATTGATAATAATAAAAAAGGTATCTTGAGTATCAAATCATCATATCAGAATGATTTCTGAAGGATCATGTGACACTGAAGACTGGAGTAATGATGCTGAAAATTCAGCTTTGCATCACAGGAATAAATTACATTTTTAAATATATTAAAATATCAAACAGTTAATATAATATTTTAATAATTTTTCACAATATCACTGATTTTACTGTATAAATGTACTTTTTTGAAACTTTTGAATGGTAGTGTACATTTTAGCGTTGAATTAGGCTACCTCAGAATTATTGTAAATATTATCATATTGTACAAGAAGGTTTTGTTTGAAAATCAGGTTGTTTCAAATTAATCTTAAATGAAAGATTAAGGATGTTTTCATCATAAATTAGGCCACAAAGGTCACACGATTAGTGCTGTGTGATTTCACCTACACAATAAA

Function

symbol description
gucy2d Predicted to enable guanylate cyclase activity and peptide receptor activity. Predicted to be involved in cGMP biosynthetic process and receptor guanylyl cyclase signaling pathway. Predicted to act upstream of or within several processes, including cyclic nucleotide biosynthetic process; protein phosphorylation; and visual perception. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Is expressed in head. Human ortholog(s) of this gene implicated in Leber congenital amaurosis 1; choroidal sclerosis; cone-rod dystrophy 6; congenital stationary night blindness; and retinitis pigmentosa. Orthologous to human GUCY2D (guanylate cyclase 2D, retinal).
gucy2f Enables guanylate cyclase activity. Acts upstream of or within photoreceptor cell outer segment organization and visual perception. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Is expressed in olfactory epithelium; olfactory receptor cell; retina; and retinal outer nuclear layer. Used to study Leber congenital amaurosis. Human ortholog(s) of this gene implicated in Leber congenital amaurosis 1; choroidal sclerosis; cone-rod dystrophy 6; congenital stationary night blindness; and retinitis pigmentosa. Orthologous to human GUCY2D (guanylate cyclase 2D, retinal).

NR:

description
membrane guanylyl cyclase OLGC5

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process

KEGG:

id description
K12321 GUCY2D_E; guanylate cyclase 2D/E

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000039_08131887_08142840.mRNA True 5782 mRNA 0.41 10 8130840 8145112

Neighbor

gene id symbol gene type direction distance location
CI01000039_08127858_08129554 NA coding downstream 1151 8127613 ~ 8129689 (-)
CI01000039_08102220_08109961 NA coding downstream 20879 8101978 ~ 8109961 (-)
CI01000039_08065500_08069266 NA coding downstream 61150 8065500 ~ 8069690 (-)
CI01000039_08062731_08064494 NA coding downstream 66346 8062593 ~ 8064494 (-)
CI01000039_08038068_08041738 NA coding downstream 89102 8036919 ~ 8041738 (-)
CI01000039_08160613_08163045 NA coding upstream 15368 8160480 ~ 8163045 (-)
CI01000039_08175148_08187608 SLC12A9 coding upstream 29871 8174983 ~ 8187608 (-)
CI01000039_08189467_08193070 NA coding upstream 44170 8189282 ~ 8193070 (-)
CI01000039_08214054_08244061 MINK1 coding upstream 68925 8214037 ~ 8244061 (-)
CI01000039_08253442_08273324 PLD2 coding upstream 108204 8253316 ~ 8273324 (-)
G183266 NA non-coding downstream 12695 8115579 ~ 8118145 (-)
G183281 NA non-coding downstream 17120 8113166 ~ 8113720 (-)
G183270 NA non-coding downstream 42137 8081022 ~ 8088703 (-)
G183272 NA non-coding downstream 52226 8078210 ~ 8078614 (-)
G183341 NA non-coding downstream 55485 8075119 ~ 8075355 (-)
G183350 NA non-coding upstream 19678 8164790 ~ 8165020 (-)
G183275 NA non-coding upstream 50866 8195978 ~ 8197521 (-)
G183352 NA non-coding upstream 53207 8198319 ~ 8198540 (-)
G183353 NA non-coding upstream 53449 8198561 ~ 8198866 (-)
G183354 NA non-coding upstream 54168 8199280 ~ 8199769 (-)
G183261 NA other downstream 155795 7972116 ~ 7975045 (-)
CI01000039_07134422_07137732 NA other downstream 993073 7134422 ~ 7137767 (-)
CI01000039_06647926_06651530 NA other downstream 1482264 6646544 ~ 6653449 (-)
G182827 NA other downstream 1495640 6634547 ~ 6635200 (-)
G182771 NA other downstream 1622407 6507955 ~ 6508433 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location