XLOC_009231 (tmem199)


Basic Information

Item Value
gene id XLOC_009231
gene name tmem199
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 24673283 ~ 24676315 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00018146
GGACACCCAGTGCATCTTCACGAGCTGTTTGAAGACAGCACCCTTCATCTTCCAGAAGTCATCACACCTCCAAGAaaccCTCAGCTGGTGGCCCGTCTCgaaaaaattaaagcaaaactGGCCAATGAAGAATATAAGAGAATAACACGGAACGTAAATCCACAGGAAATGAATCAACATGGAACTTTAGCAGACTTTGGAAGACAAGTACGCTCCGTGAAGGCTGTTGTTGTTACTGTATTCAATTTCCTGGTAACTGTAATTGCAGCATTTGCCTGTTCATATCTGGGCAGCCAGTATATCTTCACTGAGACGACAGCAagagTAATAGCTGCCGTTATTGCAGCATCTGTTGTCGGCCTTGCTGAGCTCTATGTTCTGGTCCGGACTATGGAAGGAGATCTTGGAGAGCCCTAATAGTgactaatattattaaatatttccagtttttgttgttgttaacttGTTTCACCATACAActgttttagtttcttgttttctTCCGAATCAAAACCCTGCAGCTTAACAAATCAATCTTGATCTAAAAATTTTATCTAAAAGATCACatttattagtaaaataaattacacacacacacaccagactaTACATTATTCATATTACTGTCTAGTTTTTCCACAATTCtagtgtttgtatttattttttattccttcatggacattatttctttAAAGCGACATGATTGTAAATGATTTGTGCTTGGATGTTTATTGTGACTGACTCCCTAGAAGTAGTGTGGAAAAAtgtgattaataaaataataaaagaataaaagaatgCTTAAGTCAAcagcatttaaaagaaaaaagggaACATTTATTAAATCACACACCCTGGCAATG
>TCONS_00018147
AAGCTTCTTCAGGACAATGGACACCCAGTGCATCTTCACGAGCTGTTTGAAGACAGCACCCTTCATCTTCCAGAAGTCATCACACCTCCAAGAaaccCTCAGCTGGTGGCCCGTCTCgaaaaaattaaagcaaaactGGCCAATGAAGAATATAAGAGAATAACACGGAACGTAAATCCACAGGAAATGAATCAACATGGAACTTTAGCAGACTTTGGAAGACAAGTACGCTCCGTGAAGGCTGTTGTTGTTACTGTATTCAATTTCCTGGTAACTGTAATTGCAGCATTTGCCTGTTCATATCTGGGCAGCCAGTATATCTTCACTGAGACGACAGCAagagTAATAGCTGCCGTTATTGCAGCATCTGTTGTCGGCCTTGCTGAGCTCTATGTTCTGGTCCGGACTATGGAAGGAGATCTTGGAGAGCCCTAA

Function

symbol description
tmem199 Predicted to act upstream of or within vacuolar proton-transporting V-type ATPase complex assembly. Predicted to be located in endoplasmic reticulum membrane. Predicted to be integral component of membrane. Predicted to be active in endomembrane system. Human ortholog(s) of this gene implicated in congenital disorder of glycosylation type IIp. Orthologous to human TMEM199 (transmembrane protein 199).

GO:

id name namespace
GO:0070072 vacuolar proton-transporting V-type ATPase complex assembly biological_process
GO:0012505 endomembrane system cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003674 molecular_function molecular_function

KEGG:

id description
ko04131 Membrane trafficking

ZFIN:

id description
ZDB-GENE-050522-150 Predicted to act upstream of or within vacuolar proton-transporting V-type ATPase complex assembly. Predicted to be located in endoplasmic reticulum membrane. Predicted to be integral component of membrane. Predicted to be active in endomembrane system. Human ortholog(s) of this gene implicated in congenital disorder of glycosylation type IIp. Orthologous to human TMEM199 (transmembrane protein 199).

Ensembl:

ensembl_id ENSDARG00000069314

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00018146 False 863 mRNA 0.37 5 24673283 24676211
TCONS_00018147 True 435 mRNA 0.45 6 24673729 24676315

Neighbor

gene id symbol gene type direction distance location
XLOC_009230 NA coding downstream 54378 24592325 ~ 24618905 (-)
XLOC_009229 gemin4 coding downstream 84634 24583682 ~ 24588649 (-)
XLOC_009228 NA coding downstream 110222 24561821 ~ 24563061 (-)
XLOC_009226 pipox coding downstream 494390 24150090 ~ 24178893 (-)
XLOC_009227 CU313324.1 coding downstream 514216 24158953 ~ 24159067 (-)
XLOC_009232 trarg1a coding upstream 168830 24845145 ~ 24869826 (-)
XLOC_009233 aipl1 coding upstream 197073 24873388 ~ 24884784 (-)
XLOC_009234 NA coding upstream 225236 24901551 ~ 24927093 (-)
XLOC_009235 abhd15a coding upstream 270006 24946321 ~ 24960781 (-)
XLOC_009236 NA coding upstream 291777 24968092 ~ 24974112 (-)
XLOC_009205 NA non-coding downstream 1519023 23144954 ~ 23154260 (-)
XLOC_009204 BX572079.1 non-coding downstream 1718151 22955017 ~ 22955132 (-)
XLOC_009254 NA non-coding upstream 1022497 25698812 ~ 25876120 (-)
XLOC_009256 CR848822.3 non-coding upstream 1318665 25994980 ~ 25995095 (-)
XLOC_009257 CR848822.2 non-coding upstream 1399048 26075363 ~ 26075480 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000072_02569674_02570734 TMEM199 coding CI01000072 null 2569085 ~ 2571972 (+)