XLOC_009233 (aipl1)


Basic Information

Item Value
gene id XLOC_009233
gene name aipl1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 24873388 ~ 24884784 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00018149
CCAGATCCAGTCAGTCTTTACACCTCTGCTGTcacacaaaaacagacaaacacactgCAGACATCATGGAGGACAGCATGATTCTGGATGTTGAGGGGATCAAGAAGACTATCCTGTATGGGGGAACTGGTGCAAAGCCCAAATTTGTGACTGGAACTAAGGTGACGTTTCATTTCCGCACACAGCTCTGCAATGATGAACGTACCGTGATTGATGATAGTAAAAAGGCTGGGATGCCCATGGAAATGGTGATCGGGAACATGTTTAAGCTGGATGTGTGGGAGACGCTGCTCATGTCAATGCATATCGGAGAGGTGGCTGAGTTCTGGTGTGATGTCATCcacaCTGGGCTGTATCCAATAGTAGCCAAGAGTCTGCGACGTATCGCAGTGGGGAAAGATCCAGTGGACTGGCACATTCACACCTGCGGCATGGCCAATATGTTCGCCTACCACAGCCTGGGCTATGATGATCTGGACGAGCTCCAGAAGGAACCACAGCCGCTGTACTTTGTCATGGAGCTTCTCAAGGTACAGCAGCCCAGTGAGTATGACAGAGAGTCGTGGGCTCTGAATGACGAGGAGAGACTGAAAGCGGTACCTGTCCTCCATGGTCAAGGAAACAAGCTCTTCAAACAAGGACGATATGAGGACGCCACACTCAAGTATAAAGAAGCCATTATATGCATCAAGAATGTACAGTCAAAAGAAAAGGCATGGGAAGCGCCCTGGCTAAAACTGGAGAAAATGGCCAACACGCTCACTTTAAATTACTGTCAGTGTTTGCTGCGCATGGAGGAGTACTATGAGGTCATCGAACACACAAGTGACATCATCAACCAGCACCCTGGGACAATGAAAGCCTTCTATATGCGTGGCAAAGCACACATGGAGGTTTGGGATGAAACCGAAGCCAGAAATGATTTCATGCGGGTGTTGGATCTGGACCCAGGTATGAAAAAGACCATCAAGAAAGAGCTTGCAGTTCTCAAAATGAGAATGGAGGTAAAAAATGAGGAGGACAGGCTGAAGTACAAGGGCATGTTTGCAAAAATGGCGAGCGAGCAGGACTCCCTAGAGCTGGAGAATCCAGACCAAGAGATCCCCGAGCAAACATGTCAAGTACAAGACATGGAAAATCCAGAGGAAGCACCTGCTGAAGAACGAGCAAACTCAATGCAAAAAACTGCAGAGATGACTTTAGCATCAGATCCAGAACAAACAACTACTGCCCAATCAAGCTCTGATAATGTGATCCCAGAACAACCAACGACTCAAGATCTGACTGCAGAGCAAACTACCATAGAAGAAACTGCTCCAGAACAGTTCGACACAAATCACACATTTGTGGTGCAATCAGATTCTAAGGAAGCATCACCAAGTCCAGAGCCAATGTGTCTAGAACAAGAAGCCCAAGATACCGAGTCCTCAGATCATATGACTCCAGGAAACTGACCCGCCAGTCAATGAGTCTTAAGCGTAACAGATTTTTCAAGAGTGATGCAATAATGAAGGTGTTAATGTTCAAAATGTAACAAATATACACACTTTATACTGTTATGCATACTGTTATTTATTAGTagcaattataaatat
>TCONS_00018150
cagCATTGAACAATAcgattcaaagtaatgttttctatttatttataaatataaggaaataaattaggaaattatccTGTCATTTTTGAACTTGCTGCATGTTccaagaatgctgaaaactggtaaccgttgacttactatgaatgtcaatagcTTCTggattctaacattcttcaaaatatctctttttgtgttcaatagaaaaaaaaaacccataaaggtttggaaccacttcagGGCTAGTAAATGCTTAGTAGATTTGTAGCTTCAggattaactatccctttaagacattGAAAATATGTTATACGGCAACATATTGTTTTACCTTACAGTACTATAATACCATCCAAAATGTGTTTTTACACTTTTGATTGCCAAATATAAAAGCTTGATTAGTTTGTCCCGTGAAATCAATCTGTTTACCAATATCTAATAGAGGCTCCGATATTGGCCGGTACACAATGTTCAGACATGGCTTGTAAAAACCATAATTGCGTGTAATTTTGTGTCTCTCTTCCGTAATCCAGGACAGTCTAACTAAATGCCATAAATAAGATGAGCTGTTTCACGCGTTTGTCTCAGCAGGGGCTCGGCACCAGCAGCATTGCGATCCAGCTGTCCAACACATGTGTGTGAATGGGGTCGTCGAGTCCATTTCCTGACTTTATATCACATACTTTTCTTCGGCATTCCTGCGGGCCACCATGTTGGAGTGAGCAGAAGGTTCTAGGAGAGGGATGTAGAGCAAAAATGCTGAGGAAAGCCCTTCTGTGGATGAGAAGGTGGGGCTGTTGGGCCTAATCTTGTTATCCCAGCCTTCTTAATCCAGATCCAGTCAGTCTTTACACCTCTGCTGTcacacaaaaacagacaaacacactgCAGACATCATGGAGGACAGCATGATTCTGGATGTTGAGGGGATCAAGAAGACTATCCTGTATGGGGGAACTGGTGCAAAGCCCAAATTTGTGACTGGAACTAAGGTGACGTTTCATTTCCGCACACAGCTCTGCAATGATGAACGTACCGTGATTGATGATAGTAAAAAGGCTGGGATGCCCATGGAAATGGTGATCGGGAACATGTTTAAGCTGGATGTGTGGGAGACGCTGCTCATGTCAATGCATATCGGAGAGGTGGCTGAGTTCTGGTGTGATGTCATCcacaCTGGGCTGTATCCAATAGTAGCCAAGAGTCTGCGACGTATCGCAGTGGGGAAAGATCCAGTGGACTGGCACATTCACACCTGCGGCATGGCCAATATGTTCGCCTACCACAGCCTGGGCTATGATGATCTGGACGAGCTCCAGAAGGAACCACAGCCGCTGTACTTTGTCATGGAGCTTCTCAAGGTCTGAATTCAACATCACTTTCTAGCTCATTGAGAAAAATTACAATTTGGTTCTCAAAAGTACACATTCTttatgatacactgtaaaaaaataaaatgcacgtaattcattcatgttgtccaaacacaaattgatcaagttaacttaacacttttaacaaatttatgaagattgaacataaaaaataaagttgtcccaatgaaatctcaagaattgtattgtttctGCTCATTCTGATAAAGTAGTttgtacaagtaaaaaaaaaaaaaaaaaaaaaaaaaaaaaatatatatatatatatatatatatatatttattcatttattaattttttttttttttttttgagtgtaggttTGCA

Function

symbol description
aipl1 Predicted to enable peptidyl-prolyl cis-trans isomerase activity. Predicted to act upstream of or within visual perception. Predicted to be located in cytoplasm and nucleus. Is expressed in brain; photoreceptor cell; retina; and retinal rod cell. Human ortholog(s) of this gene implicated in Leber congenital amaurosis; Leber congenital amaurosis 4; blindness; and retinitis pigmentosa. Orthologous to human AIPL1 (aryl hydrocarbon receptor interacting protein like 1).

GO:

id name namespace
GO:0007601 visual perception biological_process
GO:0003755 peptidyl-prolyl cis-trans isomerase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-131121-577 Predicted to enable peptidyl-prolyl cis-trans isomerase activity. Predicted to act upstream of or within visual perception. Predicted to be located in cytoplasm and nucleus. Is expressed in brain; photoreceptor cell; retina; and retinal rod cell. Human ortholog(s) of this gene implicated in Leber congenital amaurosis; Leber congenital amaurosis 4; blindness; and retinitis pigmentosa. Orthologous to human AIPL1 (aryl hydrocarbon receptor interacting protein like 1).

Ensembl:

ensembl_id ENSDARG00000075067

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00018149 False 1595 mRNA 0.46 6 24873388 24883956
TCONS_00018150 True 1719 mRNA 0.38 3 24878480 24884784

Neighbor

gene id symbol gene type direction distance location
XLOC_009232 trarg1a coding downstream 3562 24845145 ~ 24869826 (-)
XLOC_009231 tmem199 coding downstream 197073 24673283 ~ 24676315 (-)
XLOC_009230 NA coding downstream 254483 24592325 ~ 24618905 (-)
XLOC_009229 gemin4 coding downstream 284739 24583682 ~ 24588649 (-)
XLOC_009228 NA coding downstream 310327 24561821 ~ 24563061 (-)
XLOC_009234 NA coding upstream 16767 24901551 ~ 24927093 (-)
XLOC_009235 abhd15a coding upstream 61537 24946321 ~ 24960781 (-)
XLOC_009236 NA coding upstream 83308 24968092 ~ 24974112 (-)
XLOC_009237 si:ch211-198e20.10 coding upstream 122425 25007209 ~ 25010400 (-)
XLOC_009238 pimr190 coding upstream 151163 25035947 ~ 25039083 (-)
XLOC_009227 CU313324.1 non-coding downstream 714321 24158953 ~ 24159067 (-)
XLOC_009205 NA non-coding downstream 1719128 23144954 ~ 23154260 (-)
XLOC_009204 BX572079.1 non-coding downstream 1918256 22955017 ~ 22955132 (-)
XLOC_009254 NA non-coding upstream 814028 25698812 ~ 25876120 (-)
XLOC_009256 CR848822.3 non-coding upstream 1110196 25994980 ~ 25995095 (-)
XLOC_009257 CR848822.2 non-coding upstream 1190579 26075363 ~ 26075480 (-)

Expression


Co-expression Network