XLOC_009240 (exo5)


Basic Information

Item Value
gene id XLOC_009240
gene name exo5
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 25084821 ~ 25094026 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00018157
AGGTAAAACATTGTGCAATTGTGGTAGTTTGTTGTGAATGTGGTCATGTGACTTTATTTTCTGGACACAAGCGGAGTCCCAGCTTCCTCTTATCGGAGAAACTAAAGGTAAACATTCAGTGAACTTGGACAAACCCAGTTCATCTTCATCATTTCACAAGTGCAGTGAAGAAGCACCGAAGCAAGAAGCAGTGAAAACTGATGATGTGAGGGGTTTAAAGAGAAAGAGCCTCCACGAAAACAGCTTCAGCCCAATGCAACGCTTCCGGAAGCAGCATCTGAGTGTGACCCTCCTGTGTGACCAGACTTGGTGTGAGATGAAGAGCGTTTACAATCTTTTGAAGCCCCATATCAAGAGAAAAGAAATGCAACGCACTGAGGTGCAAATCGGACAAGAAATTCATTTATCAAGGGAATTGGAAATACAGGATGTTGTCCCAGTAGATATCCGCACTAGAGAGGATGGAGAAGCCGTCAAACTTCTCAACATGCTACACATGATCCCGCTGTTAGAAGCAGGACAGCGTGTGCGAGAGTTCCCCGTGTTTGGTGTGCAGGAAGGTGTTTTCATCATGGGGGTCATTGATGAACTCATGTATAACCAGAAGGGGGAGCTGGTGCTGAATGAGCTCAAGACACGCAGACAGAACTCCTTGCCCAGTTCTGCACAAGATAAAGTCAACTGCTTTCAGGGTTTTTTTCTTGTAAGGCACggctttcgaaaatgatgacatgagactcTGCTGGGTAGCTGCGCTGGTTTACTAACACTTGTTTAGGTGGGCCTGTATAAATTGCTCTTTGATGGACTGGTCAGAGGGgagatgaaaaaaaatcacattttcgaTCACCTCAAACTGCGTTCTGCTCAAATTCTCGGTGCAGGCGTCCAGGCTCATGCTAAAAACCTTGGGGTTCATGCCAGAACATTTGAGGAGCTGGTTGAAACTTTGCTTATAACAGTGTCATGCTCTGATCTTCCATGTATTGACCTGCTTCAGATTGAATACTTTCATCAAGGCTCTAATGGGCCCATTGGGACAAGAGTGGCTCCTTTTGATGAAGCCCAAATACGGGGAGAGCTTCAGGCTTATTTGTCCTACTGGACGGGACAGAGAGAACCTAAAGGGGTGGATATAGAGGAGGCCTGGAAATGCAGATCATGCCTGTATGAGGAGATCTGCGAATGGAGGAAGAACAGATTTACAGTTTCTGACCAACAAGCGGCTCATTCTAGCTCACACTTATGATTTTACagatcatatttatatatttgaatgtGCAGTGTTAATTATGCTTTTGACTTTTATACCTTGATTAATGTTTTCTTGTTCTATTgaagcatttctgtttttaaatcagGATGTGAAcattattgtgcagctctataaTAACTGTGATTGAAGTGCTTTGACTGAATAATGCACTATTAAAGccatgatgcatttttttttttgtttagtatgGTATGGTTTAGTATGTTTTATGGAAGCAGGCTTCTCTTGTTGTGTGCATTAAAAGTTTTAGGCCACTTA
>TCONS_00018158
ATCAGCAAATGAAATACAAACATTAGCAGCAAGCGAAGAAAGATGTTGTTGACAGAGGCGGGGCATTGACGGAAGTTGTTCGGGCATGTCTCATGTAAACAattcaaacttaaaataaaaacaaattaaaatacaaactAGCATCGTGTTTAAGTTCCTGCAGCATTGGTGTAAAGTGCACAATGGGCTGAGAGAACAGTTTGAGTTTGCTTTTATGATGGATGCGTCTAGATCACAACAACCGCTGGATGCCTGGGACGACATTAGCGACTCTGAGTTTCTTAACATCCCTTCCGACGAAGAAAGTATAGAGTCCCAGCTTCCTCTTATCGGAGAAACTAAAGGTAAACATTCAGTGAACTTGGACAAACCCAGTTCATCTTCATCATTTCACAAGTGCAGTGAAGAAGCACCGAAGCAAGAAGCAGTGAAAACTGATGATGTGAGGGGTTTAAAGAGAAAGAGCCTCCACGAAAACAGCTTCAGCCCAATGCAACGCTTCCGGAAGCAGCATCTGAGTGTGACCCTCCTGTGTGACCAGACTTGGTGTGAGATGAAGAGCGTTTACAATCTTTTGAAGCCCCATATCAAGAGAAAAGAAATGCAACGCACTGAGGTGCAAATCGGACAAGAAATTCATTTATCAAGGGAATTGGAAATACAGGATGTTGTCCCAGTAGATATCCGCACTAGAGAGGATGGAGAAGCCGTCAAACTTCTCAACATGCTACACATGATCCCGCTGTTAGAAGCAGGACAGCGTGTGCGAGAGTTCCCCGTGTTTGGTGTGCAGGAAGGTGTTTTCATCATGGGGGTCATTGATGAACTCATGTATAACCAGAAGGGGGAGCTGGTGCTGAATGAGCTCAAGACACGCAGACAGAACTCCTTGCCCAGTTCTGCACAAGATAAAGTCAACTGCTTTCAGGTGGGCCTGTATAAATTGCTCTTTGATGGACTGGTCAGAGGGgagatgaaaaaaaatcacattttcgaTCACCTCAAACTGCGTTCTGCTCAAATTCTCGGTGCAGGCGTCCAGGCTCATGCTAAAAACCTTGGGGTTCATGCCAGAACATTTGAGGAGCTGGTTGAAACTTTGCTTATAACAGTGTCATGCTCTGATCTTCCATGTATTGACCTGCTTCAGATTGAATACTTTCATCAAGGCTCTAATGGGCCCATTGGGACAAGAGTGGCTCCTTTTGATGAAGCCCAAATACGGGGAGAGCTTCAGGCTTATTTGTCCTACTGGACGGGACAGAGAGAACCTAAAGGGGTGGATATAGAGGAGGCCTGGAAATGCAGATCATGCCTGTATGAGGAGATCTGCGAATGGAGGAAGAACAGATTTACAGTTTCTGACCAACAAGCGGCTCATTCTAGCTCACACTTATGATTTTACagatcatatttatatatttgaatgtGCAGTGTTAATTATGCTTTTGACTTTTATACCTTGATTAATGTTTTCTTGTTCTATTgaagcatttctgtttttaaatcagGATGTGAAcattattgtgcagctctataaTAACTGTGATTGAAGTGCTTTGACT
>TCONS_00018159
ATGTGGTCATGTGACTTTATTTTCTGGACACAAGCGGAGTCCCAGCTTCCTCTTATCGGAGAAACTAAAGGTAAACATTCAGTGAACTTGGACAAACCCAGTTCATCTTCATCATTTCACAAGTGCAGTGAAGAAGCACCGAAGCAAGAAGCAGTGAAAACTGATGATGTGAGGGGTTTAAAGAGAAAGAGCCTCCACGAAAACAGCTTCAGCCCAATGCAACGCTTCCGGAAGCAGCATCTGAGTGTGACCCTCCTGTGTGACCAGACTTGGTGTGAGATGAAGAGCGTTTACAATCTTTTGAAGCCCCATATCAAGAGAAAAGAAATGCAACGCACTGAGGTGCAAATCGGACAAGAAATTCATTTATCAAGGGAATTGGAAATACAGGATGTTGTCCCAGTAGATATCCGCACTAGAGAGGATGGAGAAGCCGTCAAACTTCTCAACATGCTACACATGATCCCGCTGTTAGAAGCAGGACAGCGTGTGCGAGAGTTCCCCGTGTTTGGTGTGCAGGAAGGTGTTTTCATCATGGGGGTCATTGATGAACTCATGTATAACCAGAAGGGGGAGCTGGTGCTGAATGAGCTCAAGACACGCAGACAGAACTCCTTGCCCAGTTCTGCACAAGATAAAGTCAACTGCTTTCAGGGTTTTTTTCTTGTAAGGCACggctttcgaaaatga

Function

symbol description
exo5 Predicted to enable 4 iron, 4 sulfur cluster binding activity and single-stranded DNA 5'-3' exodeoxyribonuclease activity. Predicted to be involved in interstrand cross-link repair. Predicted to act upstream of or within DNA repair. Predicted to be located in cytosol. Predicted to be active in nucleus. Orthologous to human EXO5 (exonuclease 5).

GO:

id name namespace
GO:0036297 interstrand cross-link repair biological_process
GO:0006974 cellular response to DNA damage stimulus biological_process
GO:0006281 DNA repair biological_process
GO:0005829 cytosol cellular_component
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0004518 nuclease activity molecular_function
GO:0045145 single-stranded DNA 5'-3' exodeoxyribonuclease activity molecular_function
GO:0046872 metal ion binding molecular_function
GO:0004527 exonuclease activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0003677 DNA binding molecular_function
GO:0051536 iron-sulfur cluster binding molecular_function
GO:0051539 4 iron, 4 sulfur cluster binding molecular_function

KEGG:

id description
ko03400 DNA repair and recombination proteins

ZFIN:

id description
ZDB-GENE-051113-108 Predicted to enable 4 iron, 4 sulfur cluster binding activity and single-stranded DNA 5'-3' exodeoxyribonuclease activity. Predicted to be involved in interstrand cross-link repair. Predicted to act upstream of or within DNA repair. Predicted to be located in cytosol. Predicted to be active in nucleus. Orthologous to human EXO5 (exonuclease 5).

Ensembl:

ensembl_id ENSDARG00000042727

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00018157 False 1534 nonsense_mediated_decay 0.43 7 25084821 25093717
TCONS_00018158 False 1565 mRNA 0.43 6 25084940 25094026
TCONS_00018159 True 690 mRNA 0.46 6 25087205 25093680

Neighbor

gene id symbol gene type direction distance location
XLOC_009239 pimr191 coding downstream 1621 25080041 ~ 25083200 (-)
XLOC_009238 pimr190 coding downstream 45738 25035947 ~ 25039083 (-)
XLOC_009237 si:ch211-198e20.10 coding downstream 74421 25007209 ~ 25010400 (-)
XLOC_009236 NA coding downstream 110709 24968092 ~ 24974112 (-)
XLOC_009235 abhd15a coding downstream 124040 24946321 ~ 24960781 (-)
XLOC_009242 vps53 coding upstream 6700 25100726 ~ 25153403 (-)
XLOC_009243 mnta coding upstream 78645 25172671 ~ 25209308 (-)
XLOC_009244 mettl16 coding upstream 120145 25214171 ~ 25269028 (-)
XLOC_009245 pafah1b1a coding upstream 179159 25273185 ~ 25319663 (-)
XLOC_009246 cluha coding upstream 227546 25321572 ~ 25367309 (-)
XLOC_009234 NA non-coding downstream 157728 24901551 ~ 24927093 (-)
XLOC_009230 NA non-coding downstream 465916 24592325 ~ 24618905 (-)
XLOC_009228 NA non-coding downstream 521760 24561821 ~ 24563061 (-)
XLOC_009227 CU313324.1 non-coding downstream 925754 24158953 ~ 24159067 (-)
XLOC_009254 NA non-coding upstream 604786 25698812 ~ 25876120 (-)
XLOC_009256 CR848822.3 non-coding upstream 900954 25994980 ~ 25995095 (-)
XLOC_009257 CR848822.2 non-coding upstream 981337 26075363 ~ 26075480 (-)
XLOC_009258 NA non-coding upstream 1023168 26117194 ~ 26183974 (-)
XLOC_009259 CU179658.2 non-coding upstream 1180614 26274640 ~ 26274757 (-)

Expression


Co-expression Network