XLOC_009246 (cluha)


Basic Information

Item Value
gene id XLOC_009246
gene name cluha
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 25321572 ~ 25367309 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00018174
CGGTTGTTTGGTTTGGGAGGGACCAACGCAAAGGCAAGCAGGTCAAGAGGAGGAGAAACCACGTGTGACAGTCAGGCAGCCTGAGAACTGGAGCTCTGTCCTTCGCAAGTTAGCTTGTTTTTGTAATATCTTTGCATGCAACCGGACAGCCGTTCCGTCAAGCGGAGAAGGCAGGCCAATTAGCAGACTCACTAAACAGCCCACACAACGGACGTCTGCTGCTAACTCTCTCTCAACCCGAGGAACCATGGTGAGCAAGACGGATGACATCCCAGCATCAGTGCCGAACTGCAGCCCGGCTGATTTTGCCCGGGACGGAGAGACAGCCAACAGCAAAGGCACCACCAGTAAGAAGGAGGCGTCGTGTGCCTGCGGGCACGGTGTTGAGACAGCAGTGATGAACGGGGATGCGGGTCATGATCAGGCGGAGGAGGCCGACTCAAAGCAGGACGGCAGTGGCGACGCAGACCAAGCAGAAGATGCTAACGAACAAGAAGTAATCGTAATTCAAGACACTGGCTTCACTGTGAAGATCCAAGCACCAGGAACCGAACCCTTTGACCTTCAGGTGTCTCCACAAGAGATGGTACAGGAGATTCATCAAGTTCTGATGGACCGAGAGGACACCTGCCATCGCACCTGCTTCTCCTTACAGCTCGACGGAAATGTTCTCGACAACTTTGCCGAGCTGAAATCCATCGAGGGCCTTCAGGAAGGCTCGCTTCTTAAAGTGGTCGAAGAGCCCTACACAGTGCGTGAAGCTCGCATTCATGTCCGTCACATCAGGGACCTGCTGAAGAGCCTGGATCCATCAGATGCTTATAATGGAGTAGACTGCAACTCCCTCTCCTTCCTCAGCGTCTTCTCAGAAGGAGATCTTGGAGATACTGGCAAGCGCAAAAAGAAGGGCAGTGAACTTGAGCAGATTGATTGCACACCTCCCGAACACATTCTGCCAGGCAGCAAAGAGCGTCCTTTAGTTCCCCTTCAGCCACAAAACAAAGACTGGAAGCCTATGCAGTGCCTGAAGGTTTTGACCATGAGTAGCTGGAACCCTCCGCCCGGCAACAGAAAAATGCACGGTGACCTCATGTATCTGTACATCGTGACTGTTGAGGACAGACACGTCAGCATCACTGCCTCCACACGCGGATTCTACCTCAATCAGTCCACTACTTATAACTTCAGCCCCAAGCCAGCCAATCCCAGCTTCCTCAGTCACTCTTTAGTGGAACTACTAAGCCAGATCAGCGCTGCCTTTAAGAAGAACTTCACCACTCTGCAGAAGAAGAGGGTTCAGAGGCATCCATTTGAGAGAATAGCCACTCCCTTTCAAGTGTACAGCTGGACTGCACCACTGATTGATCATGCTATGGACTGTGTGAGAGCGGAGGACGCCTACACCTCCCGACTGGGTTATGAGGAGCACATACCTGGCCAAACTAGAGACTGGAACGAGGAGCTTCAGACAACCAGAGAACTTACTCGAAAGAACCTTCCAGAGCGCCTGCTTAGAGAGCGAGCCATATTCAAGGTTCATAGTGACTTTGCCGCTGCGGCGACCCGTGGTGCGATGGCGGTCATTGATGGCAACGTCATGGCCATCAACCCTGGTGAGGAAACGCGCATGCAGATGTTCATCTGGAACAACATCTTCTTCAGCTTAGGTTTTGACGTGCGCGACCACTACAGGGAGCTCGGCGGAGACTCTGCTGCCCATGCCGCCCCTACCAATGACCTGAACGGGGTGCGAGCATACAGCGCTGTAGATGTGGAAGGACTCTACACTTTGGGAACAGTGGTGGTTGACTACAGAGGATACCGTGTAACTGCGCAGTCCATCATTCCAGGCATTTTGGAGCGAGAGCAGGAGCAGAGCGTCATCTATGGCTCCATTGATTTTGGCAAGACTGTAGTGTCGCATCCAAAATATCTGGAGCTGCTGGAGAAGACCAGTCGCCCGCTGAAGGTGCAGCGCCATGCGGTGCTCAATGAGAAGGACAGCGCTGTTGAGCTTTGCTCCTCGGTGGAGTGTAAGGGTATCATTGGCAATGATGGCCGACATTATATCTTGGACCTTTTGCGCACTTTCCCTCCAGACCTGAATTTCCTGCCAGTGGAGGGGGAGGAGCTCACCCCCGAGAGCCAGAAGCTGGGCTTCCCCAGACAGCATCGCCATCGTCTGGCCTGCTTACGTCAGGAGCTCATAGAGGCCTTTGTTGAGCACAGataTCTCCTTTTCATGAAGATGGCAGCACTCCAACTAATGCAGCAGAAAGCAAACAAAGacaagactgcagctctgcaggaCTCAAATGCTGCAGGTGCTGGATCTGAAAACAAACCTCTGGCTCTAGAATCCTGTGATGGCACACCAGACTCTCCGACTTCATCTGAATCCACGCTGACCCCTGAAGACTCGGAGGCCACCACTGTCTCAGAGAACTCTTCTGCTGAAAACCAGGAAGCCATGACCGAGGTTCCTGTAGCAAGCATCAATGGTACCCATGAGCCTTTGGCTGCAGAGCGGCAGAACGGAGGCTGTGATGGGCCTCTGGAGGGTAAGGAAGCTGATGAAAATATTCCCGGACTTGCCCAAGCTAAAGAGCTGGCCGAGTCCTTAGCAGCAGAAGATGGATCCGGTATCGACCCCAAAAGTCGTGAGGTGGTGCTTAATGCCTGTAAAGCTGTGGGCTCCATCAGCAACACCTCCTTCGACATTCGCTTCAACCCAGACATCTTTTCTCCAGGAGTACGTTTCCCGGATGACAGCAATGAAGACATTCAGAAACAGAAGCAGCTTCTCAAAGATGCTGCCGCCTTTCTTGTGTCCTGCCAGATCCCTTCTCTCGTGAAAGACTGTTTAGATCACAGCTCTCTGCCTATGGATGGAGCGACGATGACAGAAGCCCTTCATCAGCGTGGCATTAATGTGCGTTATCTTGGTACTGTGCTGGAGTTTATGGATAACATGCCTGCAAAAGCACAACTTGAACACATCTACAGAATAGGAATCAGTGAACTGATCACCAGATGTGCAAAGCATATCTTCAAAACATATCTTCAGGGTGTGGATCTCTCTGCTTTATCCGCTGCGGTGAGCCACTTCCTCAACTGCCTCTTGAGCTCTTTCCCAGATGCAGTGGCTCACCTTCCTGCAGATGAGCTGGTGTCCCGCAAAAAGAGCCGCAAGAGACGCAACCGTGTCCCCGGTGGAGGAGACAACACGGCCTGGGCCAGCCTGACACCCAGCGAACTGTGGAAGAACATCACCTCTGAGGCACACGGCTACTATAACTTCAGTCTTCAATGTGAAAGCGTGGACCAGGCAGTGGAGAAGTACGGTTTGCAGAAGATCACCCTGCTGAGGGAGATCTCAATCAAGACTGGCATTCAGATCTTGATAAAGGAGTACAACTTCGACAGCCGCCACAAGCCAGCCTTCACAGAGGAGGACATCCTGAACATTTTCCCTGTTGTGAAGCACGTCAACCCCAAAGCCTCAGATGCCTTCCATTTCTTCCAGAGCGGACAGGCCAAGGTTCAGCAAGGCTTTCTAAAAGAGGGTTGTGAGCTCATCAACGAGGCCTTGAACCTCTTCAACAATGTGTATGGAGCCATGCATGTGGAGATCTGTGCCTGCCTGCGTCTTCTGGCTCGACTCAACTACATCATGGGCGATCACCCAGAGGCTCTGAGCAACCAGCAGAAGGCTGTGCTGATGAGTGAGAGAGTGCTGGGTATTGAACATCCCAATACTATTCAAGAATATATGCACTTAGCACTGTACTGCTTTGCTAACGGTCAGCTGTCCACTGCCCTGAAGCTGCTGTATCGTGCTCGCTACCTCATGCTCGTGGTCTGTGGAGAGGACCATCCTGAAATGGCTCTGCTCGATAGCAATATTGGTCTGGTGCTTCATGGTGTGATGGAGTATGACCTGTCTCTGCGTTTCCTGGAGAACGCGCTGGCCATCAACACAAAATACCACGGGCCGCGATCCTTGAAAGTAGCCCTCAGTCATCACCTGGTGGCCAGAGTTTATGAGAGCAAGGCTGAGTTTCGCTCTGCACTTCAGCATGAGAAGGAGGGATATACTATATACAAGAACCAGGTTGGCGAAGCACATGAGAAGACGAAGGAGAGCTCAGAGTACTTGAAGTACCTCACGCAGCAGGCCGTGGCTCTACAGAGAACCATGAACGAGATCTACAAAAACGGCTCCAATGCTAGCATAATGCCTCTCAAGTTTACGGCACCAAGCATGGCCAGTGTTCTGGAGCAGCTTAATATCATCAATGGCATCATCTTTATTCCCCTTAGTCAAAAGGACCTGGAGAACCTGAAGGCTGAGGTACAGAGACGGCAGCTGATGCAGGATTCTGGGAAAATCCAGGAACAGCAGGGCAGTCATTTAGAGCTCGATGACAAGCTGCCTGTGGATGATTAACAAAACCCCAAACCAACAGACCTTCTCCAGATGAGGAGGACACCATACAGCAGCCATCTGTTTCAACCTGTGGACCCGGCCACTGAGCTGTCTAATCTAACCAATTCAATTTGAGCATAACAGGGAGAGGGGGGAGGACCAGCAGCAGCCGACTAAATAAAAGTGTACAGAGAGTAGTTTATAGCTGTAAAGAAAAACGAAagcagatgtttgtttgttttttcccctaCACGTGCAATCCACTAACAAACCTCTCCCAgaggaagaaaaaagaaagtaaaccAAGCACTTCCTCTGAGAGTTTGCACCGAAGAGGATGGAGACGACCAAGGATGACCATGACATTTTATACCAGAGccttatccatccatcaatcatctCCATCTCTAACCTTCTCATCTGAGCCCAGGATAAACCCCAATCCGTCCCAAACCGACCCACGAGTGTAGAAAGAtccgaaaaaaaacaaaacacgcaCCTCCTTATCTGAAAACTCAGGTGATTTCTACACTGCGCACCAGATGAAAGACGTTCACCGTTCAGTTCAGCAACAGAGAGAAGGGAGATGGACATATATGAGTTATGGGCTTAAGAATGTATATTGTTAATGGTCTAGTCTAAAAAGCGAATGCTAGCATTGTTATTTCTATGCTCTGCCTTTAGACCGGATCGATGGGACTTTACAGATGCGTGTTCTCAAACCAATCATTTTAGATCGGTGGCGTCTGTAAAAACGAAGAATCTTTTTTGTAAAAGTCCACTAGAAGCCATTAGTACTTTCATGCGAACGTTGATTTGAGCCATGTATGTTTTATAGAAATGCATCGGGGGTTAGACGGATAATTGATTCATTTTGATCGAATACTGATTTGAAATGTCCAGCTTGAATTAGTGACTGTTGTGTTGAATCTTATTTTCCACTTtaaaagtgtgtgcgtgtgtttctgtatgtgtgtttgtctgtctcaTGCTAGCGCAGAAACGAATTCAGAGGATTCCTCCAAAGCTGCTGCAACAGAGTAATATTGTGATGATATTTTTATACGTACATCGTTAATGGACTCGATGGTGAAAAATGTGCTACAGATATCAAAGGTTCTCGAGATCGAAATCCATATACAAGTAATTTAGCACAACATTCAGGAACTTGAGATTCCTCCCTAGCAGTATTTATTGCACTTTTCCAGTGCGTGGTTTCATATTGAACCACGAAGTGAGAAAAAAGATGGGCTGCTTTGATGTAACAtaccaaaaaaaagagaaatgatGATTAAGGGTGTGTTTGCTTGTATacatgctttgtgtgtgtgtcctgcaaaTGTCAAAATGTTGCTGTGCTCAAACTGTGTATGAAGCAATATGCTGGAACTAAGTGCACCTTGGATTATGCACATGGATGCAAGAAAACTGCTAGCCTGGTTGTATTTCCCTATAAACGACAAAGTAAACttgtttaaaaactata
>TCONS_00018175
CATGACCGAGGTTCCTGTAGCAAGCATCAATGGTACCCATGAGCCTTTGGCTGCAGAGCGGCAGAACGGAGGCTGTGATGGGCCTCTGGAGGACCCCAAAAGTCGTGAGGTGGTGCTTAATGCCTGTAAAGCTGTGGGCTCCATCAGCAACACCTCCTTCGACATTCGCTTCAACCCAGACATCTTTTCTCCAGGAGTACGTTTCCCGGATGACAGCAATGAAGACATTCAGAAACAGAAGCAGCTTCTCAAAGATGCTGCCGCCTTTCTTGTGTCCTGCCAGATCCCTTCTCTCGTGAAAGACTGTTTAGATCACAGCTCTCTGCCTATGGATGGAGCGACGATGACAGAAGCCCTTCATCAGCGTGGCATTAATGTGCGTTATCTTGGTACTGTGCTGGAGTTTATGGATAACATGCCTGCAAAAGCACAACTTGAACACATCTACAGAATAGGAATCAGTGAACTGATCACCAGATGTGCAAAGCATATCTTCAAAACATATCTTCAG
>TCONS_00018176
AGTGCGACGGAACCATTGAGCGACGGAGGGAGAGCGGGGTTTTACTACGGCCTGATTTTAGGGGCACGGTGTTGAGACAGCAGTGATGAACGGGGATGCGGGTCATGATCAGCGTCTTCTCAGAAGGAGATCTTGGAGATACTGGCAAGCGCAAAAAGAAGGGCAGTGAACTTGAGCAGATTGATTGCACACCTCCCGAACACATTCTGCCAGGCAGCAAAGAGCGTCCTTTAGTTCCCCTTCAGCCACAAAACAAAGACTGGAAGCCTATGCAGTGCCTGAAGGTTTTGACCATGAGTAGCTGGAACCCTCCGCCCGGCAACAGAAAAATGCACGGTGACCTCATGTATCTGTACATCGTGACTGTTGAGGACAGACACGTCAGCATCACTGCCTCCACACGCGGA
>TCONS_00018177
GCACATGGAAAGTCATGGTGCATGTATGCCGATAGAAGGTTATTGCTACCAGTTAAATATAGAGGGATCTGTTTGGGCACGGTGTTGAGACAGCAGTGATGAACGGGGATGCGGGTCATGATCAGGCGGAGGAGGCCGACTCAAAGCAGGACGGCAGTGGCGACGCAGACCAAGCAGAAGATGCTAACGAACAAGAAGTAATCGTAATTCAAGACACTGGCTTCACTGTGAAGATCCAAGCACCAGGAACCGAACCCTTTGACCTTCAGGTGTCTCCACAAGAGATGGTACAGGAGATTCATCAAGTTCTGATGGACCGAGAGGACACCTGCCATCGCACCTGCTTCTCCTTACAGCTCGACGGAAATGTTCTCGACAACTTTGCCGAGCTGAAATCCATCGAGGGCCTTCAGGAAGGCTCGCTTCTTAAAGTGGTCGAAGAGCCCTACACAGTGCGTGAAGCTCGCATT

Function

symbol description
cluha Predicted to enable mRNA binding activity. Predicted to be involved in intracellular distribution of mitochondria. Predicted to be active in cytoplasm. Is expressed in several structures, including adaxial cell; eye; midbrain; musculature system; and pleuroperitoneal region. Orthologous to human CLUH (clustered mitochondria homolog).

GO:

id name namespace
GO:0048312 intracellular distribution of mitochondria biological_process
GO:0005737 cytoplasm cellular_component
GO:0003723 RNA binding molecular_function
GO:0003729 mRNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-061103-457 Predicted to enable mRNA binding activity. Predicted to be involved in intracellular distribution of mitochondria. Predicted to be active in cytoplasm. Is expressed in several structures, including adaxial cell; eye; midbrain; musculature system; and pleuroperitoneal region. Orthologous to human CLUH (clustered mitochondria homolog).

Ensembl:

ensembl_id ENSDARG00000030913

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00018174 False 5915 mRNA 0.49 26 25321572 25367309
TCONS_00018175 False 511 mRNA 0.49 5 25345326 25349809
TCONS_00018176 False 407 mRNA 0.53 5 25354664 25365570
TCONS_00018177 True 470 mRNA 0.51 4 25357230 25365319

Neighbor

gene id symbol gene type direction distance location
XLOC_009245 pafah1b1a coding downstream 1909 25273185 ~ 25319663 (-)
XLOC_009244 mettl16 coding downstream 52544 25214171 ~ 25269028 (-)
XLOC_009243 mnta coding downstream 112264 25172671 ~ 25209308 (-)
XLOC_009242 vps53 coding downstream 168169 25100726 ~ 25153403 (-)
XLOC_009241 rflnb coding downstream 221893 25093291 ~ 25099679 (-)
XLOC_009247 si:dkey-54n8.4 coding upstream 8614 25375923 ~ 25392589 (-)
XLOC_009248 tlcd2 coding upstream 30818 25398127 ~ 25435085 (-)
XLOC_009249 hif1al coding upstream 134555 25501864 ~ 25527581 (-)
XLOC_009250 mmp20a coding upstream 178667 25545976 ~ 25556227 (-)
XLOC_009251 mmp20b coding upstream 189613 25556922 ~ 25571865 (-)
XLOC_009236 NA non-coding downstream 347460 24968092 ~ 24974112 (-)
XLOC_009234 NA non-coding downstream 394479 24901551 ~ 24927093 (-)
XLOC_009230 NA non-coding downstream 702667 24592325 ~ 24618905 (-)
XLOC_009228 NA non-coding downstream 758511 24561821 ~ 24563061 (-)
XLOC_009227 CU313324.1 non-coding downstream 1162505 24158953 ~ 24159067 (-)
XLOC_009254 NA non-coding upstream 331503 25698812 ~ 25876120 (-)
XLOC_009256 CR848822.3 non-coding upstream 627671 25994980 ~ 25995095 (-)
XLOC_009257 CR848822.2 non-coding upstream 708054 26075363 ~ 26075480 (-)
XLOC_009258 NA non-coding upstream 749885 26117194 ~ 26183974 (-)
XLOC_009259 CU179658.2 non-coding upstream 907331 26274640 ~ 26274757 (-)

Expression


Co-expression Network