XLOC_009248 (tlcd2)


Basic Information

Item Value
gene id XLOC_009248
gene name tlcd2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 25398127 ~ 25435085 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00018179
TCAGCCGCGCCTCAAGATGATTGGGCGGGGATTCTCTTGTTTGGTTAttgtaaaagagaaaaagttacaCAAGCGTCAGGATTTTGTAACGCACACGTTAGCGACTAATTTATGGATTTGCCACTCGTAATTGAGTCGACAGTGTCTTCTTAGCTTTACAGCCGAGCGAACAATCCGAAGACTGACACGAAAAGCgtagttttttatttaacaaacaaacatagaATACTCGAGAAATTTGAATTATACGAGGACTAAGATAACATAGTCGTGAATGTTTGGATTACTGAAAGTGAAGATGAAATAAAGACCGACCCTCGGGATGTCATTTATGATTAAATAGCAGATCAAACGTCACGTTAGCGGGTTTATTCAGCTGTAGACGCGCACCAGAGACTCGAGTAGAAAACAAGCGCGCGCTCAAAATATGGAGTTGAACTCGGTGATTTTAACCACTGGATCCTCGGTGGGATTTTTCAAATTAGTAAACTACGGATTGGGCAAACTTCCTATCCCCGAGACGGCTCGGAGGAACGCTTGGAAATGGAACAACATCTCCACGTCTTTCGTGCACAGCCTCATTACTGGAGTGTGGTCCGTGCTTTGTTTTTGCATGCATCCCCAGATGGCTGAGGATTTGATAGAAACACACTCCGTTTTCTCCCACGCCCTTGTATCTGTGTCAATCGGATACTTCATATATGACTTCTTAGATATGGTGATCAATCAGAAGATCATTCATTCTTGGGAACTCCTTTTCCACCATGTAGTGGTGATCACCTGTTTCGGGATCTCGGTGCTGACCTGTCGTTATGTGGGTTTTGCTGTGGTGGCGCTGCTGGTGGAGATCAACTCTGTCTTCCTGCACCTGAGGCAAGTGCTCCGCATGGCCAACCTGGCCAAAAGCACATTTTACAGAGTCAACAGCATGATCAACCTGGGCACGTATGTGGTGTTTCGCATCAACACTCTGGCCTGGATGACCCGCTGGCTGGTGCTGAACCGTGACCTCATCCCTCTATTCAGCTACACCATCGGCAGCGTGGGTCTGGCCATCATGACCGCCATGAACATCGTGCTCTTCTACCGCCTCATGAGGAGCGACTTCATGAAGGCCAGCCGCGAGAAGGAGCTgaggaaagagaaagagaaggagaAAGACATGTAGGCTAAAAACACTCCTTGTTCTTCAGCTCCAACCAAATCCACCCTCAACAACTGCGTTCCCACACTTTAGGGATCCAAACTTTCCTCTTAAACTGCTGACTTCGTTCTCATGTTAGACCTCAAGCTGTGAGAAATAATCCATCACATTTATTTACAGATGCAAACTTGTGCGCAAATACTTCTGCATGATTTAGACAATGACGCAAAACTTGAGCGAACGATGGCTTCGTCCTTAACGCATCCAGCTTGCTCTTTATCTAATTCATATGCTAATGCTGACCAACCTgaattaatatgtaaatatagaTATTTATACACCCATACACAAAATATAACATATATGAGCAAAATGTTCACTTGTGAATGTTTTCATTAACACCTTCTGCTGCTACCTCATGAGCTTGTAGCAGAATCATTATCATTCAGTTTTAAAGTGACAGTTTGCTCAAAATCTCAAAGGCATTTCTTAAAGACGTTTATTTGAATGTCCAGGCTGCTTTATTCTGTTAATGATTGCTGTGTGTGATCCCTAAAGAACTGTAACAGAAGACCATCAAAGTATTCTGAAGATATGTGATATGTTTGGTGGCAGATgatttgtttttgggtgaactgtccctttaaatgttttgaaattctGTAGGGCTGTATTGAGCACAAATTCACTAATTAGTTGTAGTAAATTAAGTGGAAAGGGACATCAAGCGCCGTGAAGTGACATGCAATATTTATCATCTGTCATAATGTCATGTCACTCATTTCCACGTCTTAAGACTCCAAATGTGACGAAGCCTATTAGATTGTTCTAGCTATGTTAGCCAAAATATCCCTGTGTGGGTTTTTTGGTTtctatttatgatttggttatagtTATGTCACACAACTGAAACTGAGAGAATCATTTTCCCTGTACTCAAGTACACAAATGCAacaaacaagaaaattaatatcGAGCAACATTTTACACATGATATTATGTGTGTTTCTGTTCTCCCAAtgaaaaatgtttctaaaacaaAGTATGAACAGAACATTTGTGCATCTGTtaagcagtttttgtttgtttctaaatCACTTGCTTTTTAAAGCAAATCATTTAAGTCTAAGGATTTGGTGATCTGTTCTTAAAGGCAGTCACTTTAAAcgaatcatttttaaatgaatcagcCATTTGTAGCAAATCATTTGAATGACTGATTCAGTGAATCCCTCATTGAGACAGCCGCTTGCTGCCATCTGCTGGTGGTTTTAATGTCATTAATACATGTATCCATGACAGGCCCAAACTAATGGAAGCCTTATTTGtgccactgaataaaaaaaaataaagctaattgcaaattaaaatgttttacttttaatcAGAAAtctgtaataaaaacaaataattctgCCTTTATAACATGCAACTGagaatgttttttctttctttcagtttttaactTTCAATTGTACGAATTTATTCCTCTCCCCCCTCTCTTTATAATTTGTAGAAAAGTTGGAATTGCAGATATAtagttttgtttaatattaacgCCCCCTCCCCCTCCCCTTAGTATTCCTCACAGAATTCTGTCTTAACTACCAAATATGAGTCTGTAAACTTAACATTGCaataaaaatctactttttttttatttcgtgGCATGTAAGGACTTTCATACAAACCATAGATCTCAAACTGCATTCCTGGTGCaccacagctctgcagttttgctctaaccctaatc

Function

symbol description
tlcd2 Predicted to be involved in several processes, including membrane assembly; phospholipid homeostasis; and regulation of membrane lipid distribution. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Orthologous to human TLCD2 (TLC domain containing 2).

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-080204-81 Predicted to be involved in several processes, including membrane assembly; phospholipid homeostasis; and regulation of membrane lipid distribution. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Orthologous to human TLCD2 (TLC domain containing 2).

Ensembl:

ensembl_id ENSDARG00000077396

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00018179 True 2897 mRNA 0.40 4 25398127 25435085

Neighbor

gene id symbol gene type direction distance location
XLOC_009247 si:dkey-54n8.4 coding downstream 5538 25375923 ~ 25392589 (-)
XLOC_009246 cluha coding downstream 30818 25321572 ~ 25367309 (-)
XLOC_009245 pafah1b1a coding downstream 78464 25273185 ~ 25319663 (-)
XLOC_009244 mettl16 coding downstream 129099 25214171 ~ 25269028 (-)
XLOC_009243 mnta coding downstream 188819 25172671 ~ 25209308 (-)
XLOC_009249 hif1al coding upstream 66779 25501864 ~ 25527581 (-)
XLOC_009250 mmp20a coding upstream 110891 25545976 ~ 25556227 (-)
XLOC_009251 mmp20b coding upstream 121837 25556922 ~ 25571865 (-)
XLOC_009252 si:dkey-54n8.2 coding upstream 141724 25576809 ~ 25584888 (-)
XLOC_009253 taok1a coding upstream 153272 25588357 ~ 25629046 (-)
XLOC_009236 NA non-coding downstream 424015 24968092 ~ 24974112 (-)
XLOC_009234 NA non-coding downstream 471034 24901551 ~ 24927093 (-)
XLOC_009230 NA non-coding downstream 779222 24592325 ~ 24618905 (-)
XLOC_009228 NA non-coding downstream 835066 24561821 ~ 24563061 (-)
XLOC_009227 CU313324.1 non-coding downstream 1239060 24158953 ~ 24159067 (-)
XLOC_009254 NA non-coding upstream 263727 25698812 ~ 25876120 (-)
XLOC_009256 CR848822.3 non-coding upstream 559895 25994980 ~ 25995095 (-)
XLOC_009257 CR848822.2 non-coding upstream 640278 26075363 ~ 26075480 (-)
XLOC_009258 NA non-coding upstream 682109 26117194 ~ 26183974 (-)
XLOC_009259 CU179658.2 non-coding upstream 839555 26274640 ~ 26274757 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000072_02109877_02133927 TLCD2 coding CI01000072 null 2109877 ~ 2134029 (+)
bowfin (Amia calva) AMCG00005725 LOC106939373,LOC106581044,LOC102781004 coding CM030142.1 CM030142.1 8476286 ~ 8478286 (-)