XLOC_009250 (mmp20a)


Basic Information

Item Value
gene id XLOC_009250
gene name mmp20a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 25545976 ~ 25556227 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00018183
GATGAAAAGCCAGACGTGACTTCATTTTGTGGGTGACAAAAGCCACTAAATACCTGACGGTACATTCTTGTTTGAGGACCCACGTGATCTCTACTATCTTGAGGTATTCTTAAGTTGTATAAGATGCAGAGAACATGATGTGTGTTGGTCAAAATGAGCTGGTTGTGGCCATGGATTTTGCTGTTTTGGATGTTGAAGATGGACAGTGTAAGGACGTCACGTGTGGCTCTTCAGAGCTGCACCCAAGAGGATTTTCAGCATGCTGAGGAGTACCTGCGTCATTTCTACCACCTGAAAATGCGTGTTTACAATAAGAGACGTGCAGAACGCATGAAGGACAAGATCAGAGCAATGCAGCATTTCTTTGACCTGAAGGAAACTGCTTTTCTGGATCATAAAACCTTGAATGGGATGAAAGAGGCAAGATGTGGAGTCCCTGATGTGGAAAACTTCAGCTTTTATCCCGGGCGGCCCAAATGGAAGAGCAACATCATTACTTACAGGATTGCAAGATTCACTCCAGATCTCCGTCCGGAAGAGGTGGAAAACTCCTTGCATTTGGCTCTGAAAATATGGAGCGACGCTGCTCCTCTGAAGTTTGTCCAAATAAAGGAGGGCAGAGCAGATATCACCTTCTCCTTCAACTCCAAAGCTCATGGAGACTTCTTCCCTTTCGACGGGCCTGGAGGGGTGCTGGCACACGCCTTTGAGCCTGGAGAGGGACTTGGTGGAGATGTTCACTTTGATGATGATGAAATATGGACTGTGGGACGCGGCAGACCAGGATATAATCTGTTTACGGTGGCAGCTCATGAGTTGGGTCACTCTCTGGGTCTTTCTCACTCCAAAGATCCGACAGCTCTCATGTATCCAAAATACAAGTTCATCAACGCTGCAACATATAAACTGCCCAGAGACGACACACTTGGCATCCAGGCTTTGTATGGTGAGTCCAGAAAGAAAACTAGACAGCAGGAGCTTGTAATCCCTAATAAATGTGATGTCATTTCTTTTGATGCCGTGACAGTCCTCGAAAAAGaaatcattttctttaaaaacagttACATGTGGATGAGAACAAACTGGAGGTCATACTGGAACAGACTCAAGGAAGGACCTCAGAGTGTTTTTCTACCCAGCATCCCCTCACCTATAGATGCAGCTTATGACATTCCTTCGCAACGAGTGGCATATGTTTTCACAGGCCCTAAATATTGGGTGGTTCAGAAACTAGAGTCAAAGAGCTATTATTATGGCTCCATCTATGAGTTTGGATTTCCAGAAATTGTACGACAAATAGATGCTGCTGTTCATGTGAGTGAAGGGGGAAAGACCTACTTTTTCACAGGAGACTACTACTTCAGTTATGATGAAAAAAGAAATGTGATGGATCGTGGATTTCCAAGGAAAATTAATACGGGCTGGCCTGGCATTGTTGGAAAAGTGGATGCAGCTTTTGAACTCAATGGACGCGTTCACCTCTTCTGCAGATCAAAGTCATTTATCTTCAGCCATCAGAAAAGATTGCTGCACACTATGAACACTAATGCTTGGCTGGGCTGCAGTTGAAAAATAAGAAGGAAAACACCAACCACAAGTGCAAGATGTATGATTGCCTCAAGTCAAATGTCAAATGAGTTTAAAGAGTTATCTGAATCCTTATAAGCTAAAGAATCATTGGTGGAATGAATGCATTTGATCAAATTACAGATTTGTTCAGTgcatatttgaaaagaagcaagtGCTGCAAATGATTGCaagtaattttaaatataaagtattacaGAGCATGAAAGATTCATTTATATTGATTCAAATCTGTATATCGCTCAAATCATATCCACTTTTTGTTTTTGACCTTTTATTGGCTATAATGCACTTTTAAATTCATGCATTCAGATCTGTTTAATGTAAGAATACATTGTGAAAATAATACAAAAGTCaggaaaacaaatgttttttttattttactttaacttattttaataaattaatctgGTTTTCTGA
>TCONS_00018184
ATGAGCTGGTTGTGGCCATGGATTTTGCTGTTTTGGATGTTGAAGATGGACAGTGTAAGGACGTCACGTGTGGCTCTTCAGAGCTGCACCCAAGAGGATTTTCAGCATGCTGAGGAGTACCTGCGTCATTTCTACCACCTGAAAATGCGTGTTTACAATAAGAGACGTGCAGAACGCATGAAGGACAAGATCAGAGCAATGCAGCATTTCTTTGACCTGAAGGAAACTGCTTTTCTGGATCATAAAACCTTGAATGGGATGAAAGAGGCAAGATGTGGAGTCCCTGATGTGGAAAACTTCAGCTTTTATCCCGGGCGGCCCAAATGGAAGAGCAACATCATTACTTACAGGATTGCAAGATTCACTCCAGATCTCCGTCCGGAAGAGGTGGAAAACTCCTTGCATTTGGCTCTGAAAATATGGAGCGACGCTGCTCCTCTGAAGTTTGTCCAAATAAAGGAGGGCAGAGCAGATATCACCTTCTCCTTCAACTCCAAAGCTCATGGAGACTTCTTCCCTTTCGACGGGCCTGGAGGGGTGCTGGCACACGCCTTTGAGCCTGGAGAGGGACTTGGTGGAGATGTTCACTTTGATGATGATGAAATATGGACTGTGGGACGCGGATATAATCTGTTTACGGTGGCAGCTCATGAGTTGGGTCACTCTCTGGGTCTTTCTCACTCCAAAGATCCGACAGCTCTCATGTATCCAAAATACAAGTTCATCAACGCTGCAACATATAAACTGCCCAGAGACGACACACTTGGCATCCAGGCTTTGTATGGAAAGAAAACTAGACAGCAGGAGCTTGTAATCCCTAATAAATGTGATGTCATTTCTTTTGATGCCGTGACAGTCCTCGAAAAAGaaatcattttctttaaaaacagAACAAACTGGAGGTCATACTGGAACAGACTCAAGGAAGGACCTCAGAGTGTTTTTCTACCCAGCATCCCCTCACCTATAGATGCAGCTTATGACATTCCTTCGCAACGAGTGGCATATGTTTTCACAGGCCCTAAATATTGGGTGGTTCAGAAACTAGAGTCAAAGAGCTATTATTATGGCTCCATCTATGAGTTTGGATTTCCAGAAATTGTACGACAAATAGATGCTGCTGTTCATGTGAGTGAAGGGGGAAAGACCTACTTTTTCACAGGAGACTACTACTTCAGTTATGATGAAAAAAGAAATGTGATGGATCGTGGATTTCCAAGGAAAATTAATACGGGCTGGCCTGGCATTGTTGGAAAAGTGGATGCAGCTTTTGAACTCAATGGACGCGTTCACCTCTTCTGCAGATCAAAGTCATTTATCTTCAGCCATCAGAAAAGATTGCTGCACACTATGAACACTAATGCTTGGCTGGGCTGCAGTTGA

Function

symbol description
mmp20a Predicted to enable metalloendopeptidase activity. Predicted to be involved in collagen catabolic process and extracellular matrix organization. Predicted to act upstream of or within proteolysis. Predicted to be located in extracellular matrix. Predicted to be active in extracellular space. Human ortholog(s) of this gene implicated in amelogenesis imperfecta hypomaturation type 2A2. Orthologous to human MMP20 (matrix metallopeptidase 20).

GO:

id name namespace
GO:0030198 extracellular matrix organization biological_process
GO:0006508 proteolysis biological_process
GO:0030574 collagen catabolic process biological_process
GO:0031012 extracellular matrix cellular_component
GO:0005615 extracellular space cellular_component
GO:0046872 metal ion binding molecular_function
GO:0004222 metalloendopeptidase activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0008233 peptidase activity molecular_function
GO:0008237 metallopeptidase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-100603-2 Predicted to enable metalloendopeptidase activity. Predicted to be involved in collagen catabolic process and extracellular matrix organization. Predicted to act upstream of or within proteolysis. Predicted to be located in extracellular matrix. Predicted to be active in extracellular space. Human ortholog(s) of this gene implicated in amelogenesis imperfecta hypomaturation type 2A2. Orthologous to human MMP20 (matrix metallopeptidase 20).

Ensembl:

ensembl_id ENSDARG00000089887

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00018183 False 2007 mRNA 0.41 10 25545976 25556227
TCONS_00018184 True 1383 mRNA 0.45 10 25546414 25556074

Neighbor

gene id symbol gene type direction distance location
XLOC_009249 hif1al coding downstream 18395 25501864 ~ 25527581 (-)
XLOC_009248 tlcd2 coding downstream 110891 25398127 ~ 25435085 (-)
XLOC_009247 si:dkey-54n8.4 coding downstream 153387 25375923 ~ 25392589 (-)
XLOC_009246 cluha coding downstream 178667 25321572 ~ 25367309 (-)
XLOC_009245 pafah1b1a coding downstream 226313 25273185 ~ 25319663 (-)
XLOC_009251 mmp20b coding upstream 695 25556922 ~ 25571865 (-)
XLOC_009252 si:dkey-54n8.2 coding upstream 20582 25576809 ~ 25584888 (-)
XLOC_009253 taok1a coding upstream 32130 25588357 ~ 25629046 (-)
XLOC_009254 NA coding upstream 142585 25698812 ~ 25876120 (-)
XLOC_009255 dph1 coding upstream 354274 25910501 ~ 26089064 (-)
XLOC_009236 NA non-coding downstream 571864 24968092 ~ 24974112 (-)
XLOC_009234 NA non-coding downstream 618883 24901551 ~ 24927093 (-)
XLOC_009230 NA non-coding downstream 927071 24592325 ~ 24618905 (-)
XLOC_009228 NA non-coding downstream 982915 24561821 ~ 24563061 (-)
XLOC_009227 CU313324.1 non-coding downstream 1386909 24158953 ~ 24159067 (-)
XLOC_009256 CR848822.3 non-coding upstream 438753 25994980 ~ 25995095 (-)
XLOC_009257 CR848822.2 non-coding upstream 519136 26075363 ~ 26075480 (-)
XLOC_009258 NA non-coding upstream 560967 26117194 ~ 26183974 (-)
XLOC_009259 CU179658.2 non-coding upstream 718413 26274640 ~ 26274757 (-)

Expression


Co-expression Network