XLOC_009255 (dph1)


Basic Information

Item Value
gene id XLOC_009255
gene name dph1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 25910501 ~ 26089064 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00018196
GCTCTGTGTTCGATGAGTAATGCCTGTTTCACTCCACGTGCACTTGTTTGGGGAAAGATGGCGGCTTCCAGTAGCGAGTTAGAAGTGATCACTGCGAAAAAGCCTAACGTGAAAGGTCCAAGGCGGGTGGCCAATCAGATACCTGAGGAGATCTTGAAAGATTCCGATCTCAACGAGGCTATTAAGGCTTTGCCTGCAAACTACAATTTTGAAATTCATAAAACAATATGGAGGGTCCGGCAAGCTAAAGCTAAGAGGGTGGCTTTGCAGTTGCCAGAGGGTCTGCAGATGTTTGCCTGTGTGATCGCTGACATCATTGAGAGATTCACAGAGGCGGACACTCTGGTGATGGGAGATGTGACATACGGGGCCTGCTGCGTGGACGACTTCACTGCCCGCGCTTTGGGAGCCGACTTCATGGTGCATTATGGGCACAGCTGTCTCATCCCCATAGACTCGACTGAGGGCATCAAGATGCTGTACGTGTTTGTGGACATCCAGATTGACACTGCCCACTTCCTGGACACACTCAGGTTCAACTTCCCCCCCGGCCGCTCGCTCGCCCTCGTCAGCACCATCCAGTTTGTGGCTGCTTTGCAGGCAGCCAGTGCAGCTCTGAAGCCAGATTACGAAGTGCTGGTTCCTCAGTGTCGGCCACTTTCTCCTGGGGAGATCCTCGGGTGCACCTCACCTCGTCTGGACAAACATGTCAATGCTGTCATATATCTTGGGGATGGAAGATTTCATTTGGAATCCATCATGATTGCCAACCCAGACACACCTGCCTACAGGTATGACCCATACAGTAAAGTGTTTTCTCGAGAATATTATGACCATGATGCAATGCGGGCCACCAGACTGAAAGCCATCGAGAGTGCCCGCTCAGCACAGAGGTGGGGGCTCATCCTAGGCACCCTTGGTCGTCAGGGCAACCCCAAAATTTTGGAGCACTTAGAGTCTCAGTTGAAGTCTTTGGGGCGTTCATTCACACGTGTTCTCCTCTCTGAGATCTTCCCCAGGAAACTGGAGCTGTTGGCGGATGTGGATGCgcagCAGTGGCGCTACAGCAGGTTGGATGGCAGGATGTGTATCCCATGGATTTCTATTCCAATCAGAGTCTGGGGGCCTGGACTCCTAATCATCCGGATAACCAACCTAAACGGCCTGCACGCAAAACCGCACAGAAGGCTGGTCAGCAGGTGATCAGCTGTGGTCAGGAACAGAGCGCCTCCTGTGGTTGTCAACCAAAATAACATACAGCCTCATGAACATCTGCCGGAGACAAGCGGACCAATCACACTTCATCACATCAGCCTTCTGTTCACACGcaccgtcagtcagtcagtcagtgagtgagtgtgtgtgtgtgtatgtgtgtatgagatAAAAGCTCCCCCTTGAATGAACAAAGTGTGGTTTCGCTTTAGTCAAACGTAAGCATGTTGTCCCTCACCTACAAAAAGAAAGGGGCTGGCAGACATGTTTTCATGGTTGACCTTCATCCCTTCAGAATTACAGCAGGAAAGAGTGGATTCTTTCTGTGTGTATGAAGAGAAAATACTCATTCTGTACTCTACATCCAGCTTTTTATTTGCCTTAATGCTAAGCTTCTCCGACAGAAGCACTTTGAATGTTTTGTACAGGATATCTTTTAATTATgggcaaaaataaaatgaaatctttACAGTTTTCTGTCGGAC
>TCONS_00018198
GAAAGATGGCGGCTTCCAGTAGCGAGTTAGAAGTGATCACTGCGAAAAAGCCTAACGTGAAAGGTCCAAGGCGGGTGGCCAATCAGATACCTGAGGAGATCTTGAAAGATTCCGATCTCAACGAGGCTATTAAGGCTTTGCCTGCAAACTACAATTTTGAAATTCATAAAACAATATGGAGGGTCCGGCAAGCTAAAGCTAAGAGGGTGGCTTTGCAGTTGCCAGAGGGTCTGCAGATGTTTGCCTGTGTGATCGCTGACATCATTGAGAGAGTGCTTTTCCGGATGTCTGCTCAATACTAATGAAGGACCTTCTCGGCTGTGGAGCGATGGCTTGGCATTTGCGTTGAGGGATATGTTTAGCCCCAGGAACCGAGCGCAGAGTGTCACATTCCCTGAGGATTCATCCGTATTAGCAGAACATTATGGGCCTGAAATGGTTGtatctcactcagggctgctggttCGATTTGGAGGCGAGCGCAGAGTCAGTGAGTTGAAGCGAACGGCTTTGGATGTTTTGATTGGGTCGTGTGGAAGTCTTGCTGGCTGATGAGAGTCCCGGTTAATACAAATCCCTCTGTTTGATGTAGTTTAGCTGTCAGCCTTTCTGCAATTACATTCTGTATTCATCAACTGGCTTTTTCTGTAACTCATCTTCCTCTGGCTCTTGTTCTTTCAGCAGTGTTGATCTTGATGAATGTGATTAT

Function

symbol description
dph1 Predicted to enable transferase activity. Predicted to be involved in peptidyl-diphthamide biosynthetic process from peptidyl-histidine. Predicted to be located in cytoplasm and nucleus. Orthologous to human DPH1 (diphthamide biosynthesis 1).

GO:

id name namespace
GO:0017183 peptidyl-diphthamide biosynthetic process from peptidyl-histidine biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0016740 transferase activity molecular_function

KEGG:

id description
ko03012 Translation factors

ZFIN:

id description
ZDB-GENE-050417-411 Predicted to enable transferase activity. Predicted to be involved in peptidyl-diphthamide biosynthetic process from peptidyl-histidine. Predicted to be located in cytoplasm and nucleus. Orthologous to human DPH1 (diphthamide biosynthesis 1).

Ensembl:

ensembl_id ENSDARG00000057973

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00018196 False 1700 mRNA 0.50 11 25910501 26089064
TCONS_00018198 True 709 mRNA 0.47 4 26045590 26089012

Neighbor

gene id symbol gene type direction distance location
XLOC_009254 NA coding downstream 34381 25698812 ~ 25876120 (-)
XLOC_009253 taok1a coding downstream 281455 25588357 ~ 25629046 (-)
XLOC_009252 si:dkey-54n8.2 coding downstream 325613 25576809 ~ 25584888 (-)
XLOC_009251 mmp20b coding downstream 338636 25556922 ~ 25571865 (-)
XLOC_009250 mmp20a coding downstream 354274 25545976 ~ 25556227 (-)
XLOC_009258 NA coding upstream 28130 26117194 ~ 26183974 (-)
XLOC_009259 CU179658.2 coding upstream 185576 26274640 ~ 26274757 (-)
XLOC_009260 CU179658.1 coding upstream 209565 26298629 ~ 26298747 (-)
XLOC_009261 NA coding upstream 382272 26471336 ~ 26496219 (-)
XLOC_009262 rpa1 coding upstream 409275 26498339 ~ 26538989 (-)
XLOC_009236 NA non-coding downstream 936389 24968092 ~ 24974112 (-)
XLOC_009234 NA non-coding downstream 983408 24901551 ~ 24927093 (-)
XLOC_009230 NA non-coding downstream 1291596 24592325 ~ 24618905 (-)
XLOC_009228 NA non-coding downstream 1347440 24561821 ~ 24563061 (-)
XLOC_009266 NA non-coding upstream 555295 26644359 ~ 26647276 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000072_01724644_01730223 NA coding CI01000072 null 1724452 ~ 1731160 (+)