XLOC_009265 (slc47a4)


Basic Information

Item Value
gene id XLOC_009265
gene name slc47a4
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 26616004 ~ 26636826 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00018208
AATGCAACTTTCTGCCAGGACTGCAAACATCCTCCTCCCATCCTGTGGATTAAATCAAAGCGTCATTGTCTTCACCTCGGTTAATCGGTAAGCCTTCAAAGGTGCTGAATTTGGACCTGGGGAACGAACAGCTGTAGAAGGGCCCCTCGCAGTCTATGAAGCAACACACGGGCCCCTGACAGTGACTTGGAGGATCAGCGCTGAGAAGAAGATCATGGACGTCTCCAGTCCTGGAACTGACAATTTGTCAATGGAGCCCAGCGCCAAGCTGTTTTGCTGTGGTTTCATGAGGCGTTGCATCCCTCTGGTGTATCGAGAGGAGCTGTACCACATCCTGCGCATGACGGGACCCCTGCTTGTGTGCCGGTTCCTGAATTTCCTCCTTTTCTTTGTGGTGACAATGTTCTGTGGCCGCCTGGGGAACACTGTGCTGGCCGGTTACGCCATGGCCTCAGCTACAATTAATGTAACAGCTGCAGCGACGGGGTTGGGACTCGCTTTGGCATGTGACACTTTGGTATCACAGACATTCGGGAGCAAGAATCTTCTCCGTGTTGGGATCATCCTGCAGAGAGGCATCGTAATTCTGACACTCTTCAGTTTGCCCTGCTGGGCTTTGCTTGTGAACACCCAACCTCTTCTTCTGTATTTGGGACAGGAACCTGAGGTGGCCAGGATTGCACAGCTTTATGTGGTGGTTTATTTGCCAGCAATTCCAGCCATGTTTCTGTATCAGCTGCAGCTGTCATATCTTCAGAACCAGGGAGTGATCAAACCTCAGATGTACGCATCTGCTGTGGCCAATGTTGCCAATGTCATCGCGAACTATTTTCTGCTGTACTGGTGGGATTTTGGAGTTTATGGATCTGCTGCCGCAAACACCTTTGCTCaggtttttaattgttttgcccTGTTTTGTTTCATTCGCTGGCAGAAGCTCCATGAGAAAACTTGGGGAGGGTGGTCTTTAGAAGCCCTGCAGGACTGGGGCTCATATATGAAGCTGGCAATCCCCAGCACACTCATGACCTGCTTTGAATGGTGGATTTATGAAGTTGGAGGATTTCTGGCTGGAATGCTGAGTGAGGTGGACCTCGCTGCTCAACATGTGGTTATAATGCTGGCATACATCAACTACATGATCCCATTAGGAATGCAAGGTGCAGCGTGTGTTCGTGTAGGAAACGCTCTCGGCGCAGGAGAAACAGCTGCAGCAATCCTCACCAGCAAGGTGTCTCTTATCAGTGCAGCTGTTATAGCAATCATTCAGGGTTTTGTTCTGGGCTCCACAAAAACGGTCATCGGCTACATATTTACTTCGGATGAGTCCATAACAGAGCTCGTGTCTCAGCTACTGAACATCTACTGCCCTCTTCAGTTCTTTAATGGAATATTGTGTGTTGGCATGGGTGTTCTCCTTGGCACTGGGCAGCAGAAGATAGCAGCTATTGCAAACCTCTTTGGCTACTACTGTATTGGACTCCCATCAAGCATTGTTCTGATGTTCACGGCCGGTTTACAAGTTGCTGGCTTTTGGCTGGGCCTCCTCATTGCAGTCTTTTTGCTAGCAATTTTCTTCACCGTGGCCATTTTCAAATTAAACTGGAAGAAAATGACAGAAGAGGCAATTGCGCGTACAGGAAAGAGTGCAAATGGAGCAGCAAATGGAACAATGACCACTGAGTTTTGTTCAAACCATCGCAACAGCTTCTACCAGGTGGTCCTGAACGCAGAGAACGGAAATGGATACATGGTTGTGAGCTCTCAGGATCAGGACGAGAGGCTCAACAGTACTGCGGTACCCGAGGAGCCAAACGTGACTGGCGTGGAGGAAAAGCCTCCAGTTCTGCTGTCCACCACTCAGCTGGTTCTCAGGAGGGGTTTGACCACCGTCGCCGCTCTCCTCATCCTCGCCGTAGGAATAATCATCCATCTCACTGTGCCCTTACCACAAGTATCTTACGGTGCTGGTGCAAACTATACTGTGGACTCCAACTTTACCACAGCCAATCCCATCTATTCAACGAGTTTCATTTGAAATCAAGACTTCAGACAGATTCACTGTGAACTTTTTATATCTGTATATGCTGCGTGAGACCAAAAAACAAGTCTTTTAACGGCAATCCCAGGCTGTAGATTGTGACCTAAACagatgataatatttttattttgagcacaTTTGCTTTGTCCACAGCATTAGGCTGGAGGAGTATGAAAATCAACCAGCTTAGCAGAAAAAAAGGTCATATAATCTCTTTGGTTGACATTTCTAGTCAGATGACTGCTGGAGAAATACTgccaaaaagaagatattctacAAAGCCACTGTCAAGATTGAGAAAGATATGTTATTAAGCACGATGGAGATGTAGAAATTGAAGAAGTTGCATGTGAAAAAAGATTTCTCTGAattatatttttctctttttagaATGCTGCTGACGCTGCAAAAATCGCAAGaaaactttcacacacacacacactcagaaataaaggtacaagatctgtc

Function

symbol description
slc47a4 Predicted to enable transmembrane transporter activity. Predicted to act upstream of or within transmembrane transport. Predicted to be integral component of membrane. Predicted to be active in membrane. Is expressed in brain; eye; gill; liver; and pleuroperitoneal region. Orthologous to human SLC47A1 (solute carrier family 47 member 1) and SLC47A2 (solute carrier family 47 member 2).

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0022857 transmembrane transporter activity molecular_function
GO:0015297 antiporter activity molecular_function
GO:0042910 xenobiotic transmembrane transporter activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-130530-865 Predicted to enable transmembrane transporter activity. Predicted to act upstream of or within transmembrane transport. Predicted to be integral component of membrane. Predicted to be active in membrane. Is expressed in brain; eye; gill; liver; and pleuroperitoneal region. Orthologous to human SLC47A1 (solute carrier family 47 member 1) and SLC47A2 (solute carrier family 47 member 2).

Ensembl:

ensembl_id ENSDARG00000079340

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00018208 True 2509 mRNA 0.47 17 26616004 26636826

Neighbor

gene id symbol gene type direction distance location
XLOC_009264 wdr81 coding downstream 45056 26552948 ~ 26570948 (-)
XLOC_009263 serpinf2b coding downstream 63352 26540981 ~ 26552652 (-)
XLOC_009262 rpa1 coding downstream 77015 26498339 ~ 26538989 (-)
XLOC_009261 NA coding downstream 119785 26471336 ~ 26496219 (-)
XLOC_009260 CU179658.1 coding downstream 317257 26298629 ~ 26298747 (-)
XLOC_009266 NA coding upstream 7533 26644359 ~ 26647276 (-)
XLOC_009267 pitpnm3 coding upstream 42008 26678834 ~ 26844591 (-)
XLOC_009268 si:dkey-243i1.1 coding upstream 212083 26848909 ~ 26887028 (-)
XLOC_009269 ccdc9 coding upstream 266441 26903267 ~ 26931541 (-)
XLOC_009270 CR848825.1 coding upstream 355283 26992109 ~ 26994461 (-)
XLOC_009259 CU179658.2 non-coding downstream 341247 26274640 ~ 26274757 (-)
XLOC_009258 NA non-coding downstream 432030 26117194 ~ 26183974 (-)
XLOC_009257 CR848822.2 non-coding downstream 540524 26075363 ~ 26075480 (-)
XLOC_009271 NA non-coding upstream 666453 27303279 ~ 27307088 (-)
XLOC_009272 NA non-coding upstream 715696 27352522 ~ 27364490 (-)
XLOC_009273 NA non-coding upstream 754718 27391544 ~ 27414001 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000072_01351729_01362820 NA coding CI01000072 null 1350472 ~ 1363039 (+)