XLOC_009267 (pitpnm3)


Basic Information

Item Value
gene id XLOC_009267
gene name pitpnm3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 26678834 ~ 26844591 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00018209
CCTCGTTTTCGTTCCAAAATGGCACGTCTTGCGTGAAATCAACAAATCGGTCATCGatttaatgtatttttctgttttgtttactTAGTTAGCTTCTCTGACTTTAAAAATCACACCCTAGTTGACACAGTACTAATACAATGATGATCATAGGCAACTTTATTTTAACTTGTGTTTAGTTCTGGGACTGCAAAAATGATTTTACCTgtcaataaaatgtcatttatatcCTTAAGGAGGCGCTAGTGTAATATTTTTAAGtacaaaactgaataaataagtaTCTAATAGATGACAGCGGGTGGTCTGGAGTCTGCATGAATACGCTTGGCGTTTTCCAAGTTGACTGCAGCTCGCGCAGAGCCACTGGAGGCAGTCGAACATCACATCTCGAGCTCAACAGGAGAAGACAACAGCAAAgtctgcacacatacaaacagccCCAAGTCCGCGCGTACTTCAACACGAGGATTTCTCTCCGCGTTCATGGATACTCCCACATTCACATGTCATCTCCACAGCATCTTCAGCCATGAAACGCGCGTAGACTTTAAATCGCTTCTCCCGCGCGCAGACAAGGACAGAGAGAAGAGACGTGCGTACTGTCCAAACTAACTGCAAAGACGCAGGATGGCTAAAGAGACCAGAGGGAAAGCGAACCTCCGCAAGCACAGTGCTTCTCACTGGCGCATGCAGAACATCGCACAGGAATCTGTTGACAGCTCGGATGATGAGTTTTTTGATGCCAGAGAGGTGCTGGAGGGGAAGACGGCCATGCTTTTGGGGATGAGTCAGTGGAACTCTAATGATCTCGTTGAGCAGATTGAAACAATGGGACACATCGACCAAACACAGGAGAGTCTGTACCGTGTAAGGAGGACAAAATGTATCCCTCAGACTAGCATTGACGGCCTAGAGGAAGCTGAGAAATGTCAAACGCATGTGCTGGTGTTGGTGGTTCACGGGGGGAACATTCTGGACCCGGCGGGTGGAGAGCCTGGAGCAAAGACCACAGATGTAAACACGTTGTCTTCAGTCCTGGAGAAAGTATCTCAAGCTCATTTTCAAGCTGCAGCCCAGCATGTGGTCATTAAGTTGGTGCCATGCCCAGCCGTATGCGCAGAGGCCTTCTGTCTTGTGTCAAATCTGAACCCATACAGCTACGATGAGAGTTGTGTGTCAAGCAGCGTGGACCATCTACCTCTGGCCGCTTTACCGCTGCTCGCCATAGCTGCTCCACACTACCAAGATGCCGTCGCAACCGTGATCGCCCGAGCCAACCAGGTGTACCACAGATTTCTGCAGTCTCCAGAGGGACAGGGATTCACTGGCCAGGTGTGTTTGTTGGGTGACTGCGTGGGAGGTGTGCTGTGTTTCGACGCTCTCTGTTTCAGCAACAGCCCACGACACAGCAGCCCCATCCATAGCAGTCGACACAACAGCACAGAGAGCTTAAAGGATAACCCTGACGTCAGTCCGAGCCTGAGCTCCAGCAAACGCCTTAGCAGGAGCAACATCGACTTATCTGCGCCCAGCGAGACCCGCAACAGGAAAACTCCACTCAGCCGCAAACAGAGCGATTCGTATGATGGAGACTCTGGAGGTCAACACCATCCGTTCCTCAGCAGTCTGATACAGGACGGAGCAGACTTAAGACCAAACAGCAGCACCAGTTTAGTGCTAAATCCAGGACGCTTTGACTTTGAAGTGTCGGATTGTTTTCTGCTGGGTTGTCCTCTTGGATTGGTGCTGGCCATGAGACGCACTGTACTTCCTGCTGTCCAGGTGTCTCAGCTCCGGCCAGCATGTTCGCAGATCTTCAACCTGTTTTACCCCTCGGACCCATCGGCGTCCAGACTGGAGCCTTTGCTTCACTCCCAATTCCACAAACTGCCTCCGTTCCCGGTTCCCCGATACCAGCGCTACCCTTTGGGAGATGGACGCTCCAACCTTATCGCCGATGAAATCCCCAGCTACCCTGACGCATTCCTGCCTGGAAGTGTGGTTCCAGTGGGCGTCCTGCAGCCCTCGTCTCCGCAGACAGAGCGCACCGCAGGTGTACGGGTGGGTGGCGAGGTCCGCAGGTCCAGTTTGACCAGCATGGACAGTCAATCATCAGGCTGCCTGGAGAGCAGGCTGAGCAGCACCATTGCCAACATCTCCAGCAGCTGGTGGGGGTCTAAGCGGTTGGATTATGCTCTTTACTGCCCAGACGTCCTGACATCTTTCCCCACGGTGGCTCTGCCTCACCTGTTCCATGCGTCCTACTGGGAATCTACTGATGTTGTCGCCTTCCTTCTGCGACAGgtgatGCACTGCGATTATGTGAAAGCCCAAGAGATGGACAACTGTGACTCGGCCCCCTTCTCTCCTTCAAGTCCCAGAGAGAAGTGGCTCCGCAGACGTACACACGTCAAACTTAGGAACGTTACTGCAAACCATAGAGTTAATGATGTCATCGCAACTGAAGATGGCCACCAGACCCTGGTCGGTCGCTTCATGTATGGCCCGCTGGATATGGTGACCCTGACAGGGGAAAAGGTCGATGTGTACGTGATGACCCAGCCACAGTCAAGTCGCTGGGTGCACTTAGACACAGAGGTGACCAACAGCAGTGGCAGAGTGACCTACACCATCCCCAAAAGCAAAAAGCTAGCCGTGGGGGTGTACCCCATTAAAATGGTCGTCAAGGGCGACCAGACGAGCGGTGAGGCCTTCCTGACGGTTTTGCCTCGGGGGATGGAGTGTGTCGTCTTTAGCATCGACGGTTCATTCGCCGCCAGCGTCTCCATTATGGGCAGCGACCCCAAAGTACGGCCTGGAGCTGTGGATGTGGTCAGGCACTGGCAGGACCTGGGCTACCTGATCATATATATTACAGGCCGTCCAGACATGCAGAAGCAGAGGGTTGTGTCCTGGCTTTCTCAACACAACTTCCCCCAAGGGATGATCTTCTTCTCTGAAGGGCTTGTGCATGACCCACTTCGCCAGAAAACTATCTTCCTCAGGAACCTGATGCAAGAGTGTCACATTAAAATCAACTGCGCTTACGGCTCCATGAAGGACATTTCAGTCTACAGCATACTGGGCCTCAGCCCCAACCAGATATATATAGTGGGACGGCCCTCCAAGAAGTACCAGAATCAGTGCCAGTTCCTGAGTGAGGGCTATGCGGTTCACCTTTCCTCCCTGCAGTTCAGTCACAGAGCTCGTCCCAAGAAGAGCTCATCGGTGCGAATGGTGCTTCGAAAGGGCTCATTCGGTTTGTCGGCTAAACCAGACTTTCTGTGTAAGCGAACGCACCTTCGCCGCACCATGTCAGTACAACAGCCTGATCCACCCATGACTCCAAACCCTAAACCGGAGCGGGCACAGAGTCAACCTGAGACAGATAAAGACCATGGAGGTGGAGGGGGTCCAAGTCATGCCTTGTGGGCACGGGGGTCCATGCACCGTGGCGACACCACTCCCTGACCCATCAAAAACATTGAAGCAATGGAAAAAGACAGATCGGTGGACAGTGCCCAGCATCTTTACTCCTTCTGCTGATATCACACCATAGAAGATGAAAAAAAATCCCACCtgagctgtttaaaaaaaaaaaaaacacctcagtgAAGTGGATCTGATGCACAAACTCTGACCGtccaattttgtatttatttggcaGCAAGAGAACTCGGTCTCGCTTTAAAATTCAATTTCATCCATGTTTCATCCATCCGTGATGCTTTGAAAGGAGCGTCTGGATTTATTCAGCATTATGCGAAGGATTCCTGGCATCGGGCATCAAGGAAGAAAGAGGATATCTGATAAGATCCTCGGAGAACACATCAAATTTCCTCACGCCTAAGCAATACGGAGGAAGAAGGGAGTGCGAGCGTCCCGCTGCTCGGACAGGTGGCAGCGCTGACTCTTGCAATAATCCCTCTGTTTTAATATTGCAGGCATTTGTCTGCTCTCTGGGCGGCTGTCTATGGCCCGATTGTGGCCAGACGGACTTGCAAACTGTACATTAACCTTTTGTGGCAGTGTGGCGACCTGGCCTGAACTCTCGCCGCCTCTGTGTCCGTTCAGCCTCTCAGCCAGAACAGAGTCTGACAGCGATGGCCACTGCTGCTGAACTCAACGCCGCTGAAGCATATTTACAACCATGGCTGAATCTTCTTGTGCCTGTTTCTCACTCGTCTTGTAAATATACAGTAAGTGGCACTGAGGCAAACTGACTGTGTTTGGTGTAGTGGAGCATGGCAATAGCTGACTGCAGCAGTGTTTTCTTAATATTTTGGCCTTTCtggtataaatatttaaacattctgAACATGATGAATTCACCTTGTTTGAAAGTTTATTTGGGTAAAAATAAGCAAATTGGCAATTAATAAAtgaagtaatttaataaatattgaatTTATAATATACTTATAAAACCTGCAATAGGGATTAGCAAAATAAGTCATCTTTTTCTAATAATATTATAgtgtttgttatgtttattagGCAGAATTTTAggcaattattaattaaattcaaaatagaAATGAAAATAGAGACTTAGAAAACcataaactgttattttaaactttctattcatcaaagtTGAGAGAAAATGTTCCCAAAGCATTAAGCAGCAGAAAATATCTCCTGTTTTCAACATccatattacatattattaaccttctttatttttttttattgcctatTGATCAGCAGATCAGTATTTTAGAATGATTCCAGGTGGGAAAAACTGAAGAAACTGCAGCTGAAAATTCTGCGTTGTCGtcacatgaataaattaatatatatatattaaccctTACGTACTGTTGTGGATGATTTCATCCACTCTGGAGTgattt
>TCONS_00018210
ATGGAGTGTGTCGTCTTTAGCATCGACGGTTCATTCGCCGCCAGCGTCTCCATTATGGGCAGCGACCCCAAAGTACGGCCTGGAGCTGTGGATGTGGTCAGGCACTGGCAGGACCTGGGCTACCTGATCATATATATTACAGGCCGTCCAGACATGCAGAAGCAGAGGGTTGTGTCCTGGCTTTCTCAACACAACTTCCCCCAAGGGATGATCTTCTTCTCTGAAGGGCTTGTGCATGACCCACTTCGCCAGAAAACTATCTTCCTCAGGAACCTGATGCAAGAGTGTCACATTAAAATCAACTGCGCTTACGGCTCCATGAAGGACATTTCAGTCTACAGCATACTGGGCCTCAGCCCCAACCAGATATATATAGTGGGACGGCCCTCCAAGAAGTACCAGAATCAGTGCCAGTTCCTGAGTGAGGGCTATGCGGTTCACCTTTCCTCCCTGCAGTTCAGTCACAGAGCTCGTCCCAAGAAGAGCTCATCGGTGCGAATGGTGCTTCGAAAGGGCTCATTCGGTTTGTCGGCTAAACCAGACTTTCTGTGTAAGCGAACGCACCTTCGCCGCACCATGTCAGTACAACAGCCTGATCCACCCATGACTCCAAACCCTAAACCGGAGCGGGCACAGAGTCAACCTGAGACAGATAAAGACCATGGAGGTGGAGGGGGTCCAAGTCATGCCTTGTGGGCACGGGGGTCCATGCACCGTGGCGACACCACTCCCTGA

Function

symbol description
pitpnm3 Predicted to enable phospholipase activity. Acts upstream of or within cerebellum vasculature development. Predicted to be active in COPII-coated ER to Golgi transport vesicle. Used to study arteriovenous malformations of the brain. Human ortholog(s) of this gene implicated in cone-rod dystrophy 5. Orthologous to human PITPNM3 (PITPNM family member 3).

GO:

id name namespace
GO:0015914 phospholipid transport biological_process
GO:0061300 cerebellum vasculature development biological_process
GO:0030134 COPII-coated ER to Golgi transport vesicle cellular_component
GO:0005737 cytoplasm cellular_component
GO:0046872 metal ion binding molecular_function
GO:0005548 phospholipid transporter activity molecular_function
GO:0004620 phospholipase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-9216 Predicted to enable phospholipase activity. Acts upstream of or within cerebellum vasculature development. Predicted to be active in COPII-coated ER to Golgi transport vesicle. Used to study arteriovenous malformations of the brain. Human ortholog(s) of this gene implicated in cone-rod dystrophy 5. Orthologous to human PITPNM3 (PITPNM family member 3).

Ensembl:

ensembl_id ENSDARG00000055255

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00018209 False 4859 mRNA 0.48 20 26678834 26844591
TCONS_00018210 True 735 mRNA 0.54 4 26683545 26686908

Neighbor

gene id symbol gene type direction distance location
XLOC_009266 NA coding downstream 31558 26644359 ~ 26647276 (-)
XLOC_009265 slc47a4 coding downstream 42008 26616004 ~ 26636826 (-)
XLOC_009264 wdr81 coding downstream 107886 26552948 ~ 26570948 (-)
XLOC_009263 serpinf2b coding downstream 126182 26540981 ~ 26552652 (-)
XLOC_009262 rpa1 coding downstream 139845 26498339 ~ 26538989 (-)
XLOC_009268 si:dkey-243i1.1 coding upstream 4318 26848909 ~ 26887028 (-)
XLOC_009269 ccdc9 coding upstream 58676 26903267 ~ 26931541 (-)
XLOC_009270 CR848825.1 coding upstream 147518 26992109 ~ 26994461 (-)
XLOC_009271 NA coding upstream 458688 27303279 ~ 27307088 (-)
XLOC_009272 NA coding upstream 507931 27352522 ~ 27364490 (-)
XLOC_009261 NA non-coding downstream 182615 26471336 ~ 26496219 (-)
XLOC_009260 CU179658.1 non-coding downstream 380087 26298629 ~ 26298747 (-)
XLOC_009259 CU179658.2 non-coding downstream 404077 26274640 ~ 26274757 (-)
XLOC_009258 NA non-coding downstream 494860 26117194 ~ 26183974 (-)
XLOC_009273 NA non-coding upstream 546953 27391544 ~ 27414001 (-)
XLOC_009275 AL954187.1 non-coding upstream 797642 27642233 ~ 27658455 (-)

Expression


Co-expression Network