XLOC_009273


Basic Information

Item Value
gene id XLOC_009273
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 27391544 ~ 27414001 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00019175
AAAATCACAAATAACACATCTGGAATTTTATAACACACTCAGGTTGGTCAAAATTTTGATTGTTGTTTATAaagaattattttaattagtctgtttgtttctttgtttgtttgttgtaattaAACATTTGATTTTTGTTCTCTACCAATTCAGTGTGACTTTATGAATTCAtcaagaaacaacaaaaaaaaggtaAAGTTAATTTAATGTGTGCAAACAACTTGAAATACGGAAGCCTTTAGTTATGTTGTATCGTCTCTCTTTTTTGTGTGAGATTTTTCAGCTTAAATTATATAGTGAGTAAATTCACCATTATATGTTCTCCTAACGTATCTCATTTTTCCTTCATTAGGAACACTGGGCTTAGCAGTGATATCCCCAACCACTTTGAATTTGACTTGTGGCTGCCTGCCCGCAGAAGCTGTTTCACATTGTCGACCTCTTAAGGATTTTTCAACTCAGCCAGTTTACTTTTGGTTCTCTGTTCTCTTAATGATCGTTCTTTAAGCTCCATCTGTTGACAGGAAACGTTTCTGATGTTGCGCTATACTAATTGAACAGATTTGGACAGTGATTTGTGCCAGACTCACATCTCAAACTTATCTTCCAGCTCATACTTTTTGTTGACCCTACAATTCAAAAATGGAGGAAAAGGATATACTGTAGGAGCCAATCCAAGACCTAAAGCATTCAGCGAATGGGTGGATGAAAATGGCGCTCTTCTTGCCTGCCTGCTTTGGTGATGATCATCTCGGTTCCAGCCTCGTGAAACTTCTTCCATAATTCCCTGTCATGAAGAACCACTTTGATGTTTTCAATGCTCTGAAGATACCCTACATGGCAAGAGCCATTGAAAGCATGCCACTGATTGCCTACCTGGTCAGGTTCATTGTTCTGGGGATTGCTGGGAGTTGTAGGCAGGCCCAGATGTGAGGAATCGCTGGCCAGCTCAGGACGCCCACCCGACTGGGC
>TCONS_00018829
taaGCGAATGGGTGGATGAAAATGGCGCTCTTCTTGCCTGCCTGCTTTGGTGATGATCATCTCGGTTCCAGCCTCGTGAAACTTCTTCCATAATTCCCTGTCATGAAGAACCACTTTGATGTTTTCAATGCTCTGAAGATACCCTACATGGCAAGAGCCATTGAAAGCATGCCACTGATTGCCTACCTGGTCAGGTTCATTGTTCTGGGGATTGCTGGGAGTTGTAGGCAGGCCCAGATGTGAGGAATCGCTGGCCAGCTCAGGACGCC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00019175 False 972 lncRNA 0.39 3 27391544 27414001
TCONS_00018829 True 269 lncRNA 0.50 2 27391557 27391907

Neighbor

gene id symbol gene type direction distance location
XLOC_009272 NA coding downstream 27054 27352522 ~ 27364490 (-)
XLOC_009271 NA coding downstream 84456 27303279 ~ 27307088 (-)
XLOC_009270 CR848825.1 coding downstream 397083 26992109 ~ 26994461 (-)
XLOC_009269 ccdc9 coding downstream 460003 26903267 ~ 26931541 (-)
XLOC_009268 si:dkey-243i1.1 coding downstream 504516 26848909 ~ 26887028 (-)
XLOC_009274 brip1 coding upstream 1771 27415772 ~ 27522838 (-)
XLOC_009275 AL954187.1 coding upstream 228232 27642233 ~ 27658455 (-)
XLOC_009276 AL954187.2 coding upstream 232418 27646419 ~ 27646536 (-)
XLOC_009277 AL954187.3 coding upstream 240175 27654176 ~ 27654292 (-)
XLOC_009278 NA coding upstream 246244 27660245 ~ 27661117 (-)
XLOC_009266 NA non-coding downstream 744268 26644359 ~ 26647276 (-)
XLOC_009261 NA non-coding downstream 895325 26471336 ~ 26496219 (-)
XLOC_009280 NA non-coding upstream 370549 27784550 ~ 27956162 (-)

Expression


Co-expression Network