XLOC_009278


Basic Information

Item Value
gene id XLOC_009278
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 27660245 ~ 27661117 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00018830
TATGTATTCACACAGATAAAACCCAAAGCGTCCTTGAAGTTTCCCAATACAACCGTACTGACCCAGTTTGCAGCATTGCTATATGCATTTAAGTGTAAATATAAagcactaaaaaaaaaagtcaatagctGTGTGAATGCTGTCCATTATTCTCTTTTCAGCTCAAACAGAAACCTCTAGATGGCATATACAGTGTGAACTCCCCCAACACCTCCAGACTGAATGCATCTGCACTTGCTGACCAGAGCAGCATGAAGGATAACGGGCGGCGAGAAAGGGATTAATACCGTTCATCAGCCGCTCCACCTGCCCCTCTCTTCCACTGACCCATTCCTCAGGCCTCCATCTCTTATCAGATCACCATTCCTCAATGCCGTCAGTGCTCTGTCACTGCCTCGCTCCACTGTCATTTTTTATACCCCAAAAGATGTCTCTCTATATACTGTACATTGCTCTGATTCCTCCATTCCCAGAGTGGACATGTATGTTGGTAACTAGCCGTGAATAAAAAACCTAAATCAAAAGGTCATGTATGTAGTGAGGACAGGAGCGAGTGATTTAaaccatgttctaaataaaagcaacagcacatgatagaaggaataatttccatattaaaaggagtttttgttctaaccaacacctcaaattgatatattagaaatggcttctatttcttgcagctaaacaacagaaaactatgacaatgatcacctcaggtaaacctca

Function

GO:

id name namespace
GO:0048731 system development biological_process
GO:0030154 cell differentiation biological_process
GO:0007275 multicellular organism development biological_process
GO:0048856 anatomical structure development biological_process
GO:0048869 cellular developmental process biological_process
GO:0032501 multicellular organismal process biological_process
GO:0032502 developmental process biological_process
GO:0044421 obsolete extracellular region part cellular_component
GO:0003779 actin binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00018830 True 729 lncRNA 0.41 2 27660245 27661117

Neighbor

gene id symbol gene type direction distance location
XLOC_009275 AL954187.1 coding downstream 1790 27642233 ~ 27658455 (-)
XLOC_009277 AL954187.3 coding downstream 5953 27654176 ~ 27654292 (-)
XLOC_009276 AL954187.2 coding downstream 13709 27646419 ~ 27646536 (-)
XLOC_009274 brip1 coding downstream 137407 27415772 ~ 27522838 (-)
XLOC_009273 NA coding downstream 246244 27391544 ~ 27414001 (-)
XLOC_009279 lhx1a coding upstream 42292 27703409 ~ 27710575 (-)
XLOC_009280 NA coding upstream 123433 27784550 ~ 27956162 (-)
XLOC_009281 CR391930.2 coding upstream 261861 27922978 ~ 27923093 (-)
XLOC_009282 CR391930.1 coding upstream 310181 27971298 ~ 27972474 (-)
XLOC_009283 dhrs13a.3 coding upstream 345651 28006768 ~ 28085563 (-)
XLOC_009272 NA non-coding downstream 295755 27352522 ~ 27364490 (-)
XLOC_009284 NA non-coding upstream 349613 28010730 ~ 28015128 (-)
XLOC_009291 CR478288.1 non-coding upstream 695728 28356845 ~ 28357872 (-)
XLOC_009292 CR478288.2 non-coding upstream 714396 28375513 ~ 28375627 (-)

Expression


Co-expression Network