XLOC_009283 (dhrs13a.3)


Basic Information

Item Value
gene id XLOC_009283
gene name dhrs13a.3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 28006768 ~ 28085563 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00018245
GCCTGCATCCAGGTGTCATATCTACGGAAATTGGAAGGTATATGGGTCCGCTACAGAAACTGCTTTGCCTGCCCATGTCGAAGCTGTTTTTCCTGGACCCTGAGGCAGGTGCGCAGACCACACTTTACTGTGCTTTGCAGGAGGGCCTGGAGCCTCTGAGTGGACGCTACTTCTCATCTTGCGCTCTGCAAGAAGTTGGTGCTTTGGGACGGGATGATGCTCTGGCCAGGAAGCTTTGGGATGTGAGCGAGAGACTGTGTGGCCTGTCCTGAATGAGCTCACACAGGACTCCAATGTTGCAGTATTGGTGGAAAATGGCTGCTAGCGATGAATTGACTTGTGCCTGCCTCCTGGGCTCTGTGCTGTCTGCTGTTGTGGGCTGAGCGACACGGTAAATGTCACTGATCGTCAAGCGCTTGTGCAATGGCTGCCCTTGCCAGAGAAAGTGCCGAGGTGGCAGATCCCGCCTTTGATTTAGACACTAAAGGCAGCAGAACAGCAAAAGCACTGAAGCATGAAGGTAAATTCTCATAATTCACAGCTGAAAGG
>TCONS_00018246
AATCTCTTCGCCTGTGACGTAGAGAAACAGCGCCACCCAGCGCTTGTCAGAAGTTAAAGACCGGAAGCAGGCGCTGGGCAGTTATGAAACAACATAAACAAGATAACGAGCGGGAGCGAAAACACGCGTTCATGAAAACTTCGAAAGATTGTAACATTTCTTAACTGACGAACTTAAAGGAAAAAATGTCTGTCCTGTTGTCAGTGTTGGTCGGTGTGCTTGCTGCCTACGTATTGATTTATTATTGCTTGTTTAAAGGAGCCAGATATAAGGGGAACGCGACGTTAAATGGGAAAACAGCAATCGTTACAGGTAGTAATACAGGCATTGGCAAAACCACTGCTTTGGATCTTGCCAGAAGAGGAGCCCGAGTGATCCTCGCCTGCCGAAACCAAGAGAGAGCTGAAGCTGCAGTTTATGACATAAGAAAGGAAAGTGGGAACTCTGAGGTTCTGTACATGCACCTGGACTTGGCAAGTTTACAGTCTGTGCGGGATTTTGCAGAAACCTTTCTGAAGACAGAACCAAGGCTTGATCTGCTCATTAACAATGCTGGTCTTATTGCGTCAGGCAGAACTGAAGATGGTTTTGGCATGGCATTTGGTGTCAACCATCTGGGCCACTTTCTTCTGACGCTTTTGCTGTTGGATCGGCTGAAGCAGTCAGAGAACAGTCGTGTTGTCAATGTGTCTGCCCTGCTGCATCGCCTGGGCTCTCTGGATTTCAACCTCCTCAACACGCAGAAGGATCTGGTCACGGGGCAGTCATACTGGCACGCCATCAAAGCCTACTGCCACAGCAAACTATGCAATGTGCTCTTCACCCGAGAACTCGCAAACCGATTGGAGGGCACGAGTGTCACTTGCTATTGCCTGCATCCAGGTGTCATATCTACGGAAATTGGAAGGTATATGGGTCCGCTACAGAAACTGCTTTGCCTGCCCATGTCGAAGCTGTTTTTCCTGGACCCTGAGGCAGGTGCGCAGACCACACTTTACTGTGCTTTGCAGGAGGGCCTGGAGCCTCTGAGTGGACGCTACTTCTCATCTTGCGCTCTGCAAGAAGTTGGTGCTTTGGGACGGGATGATGCTCTGGCCAGGAAGCTTTGGGATGTGAGCGAGAGACTGTGTGGCCTGTCCTGAATGAGCTCACACAGACTCTTCAGATGCACAGGCCTCACAGCTGGGACTCTGACGCTCGCCAAAACCCCTGCCTGATGCTATTGAAGCAGAGATGTGCTCTTGTGCAGATATACTGAAACCTGCATCTTTTACTGCGGTATCTCCGGCTTGGTGGTGATCAGCTGGGCTTTGCTGATTGAAATTGTGGGCTCTTATTGATCTGATGTAGATGCATTGTTTGTGGAAGCATTTTCTTTTAAGAGGGTTAAGTGATCATGCATGAAGTTGCAAAGTAAACATGAGTCTAATTCAGAATTTAGACAACTATGAACTCATAAAAAGTACTTGGAAAGAATCTGAAATTCTGCCATTTGATGTAATTTTCTTGATAGTATCCATTATCATACATGTGCcattaaaacaaatgtataaaatattaataatctaTTTGTACTACATTTTCATTcagttatgtttttatttaatgttttgcatTTATAGAAGATTTCATGGTGCTGAATGTAGTTAAAATGACTTTGAGATGTTTATTACTACTTTAGCATAGATCTAAAAGTGAAATTTTCAGCTTAAACTCTTGTAAATCCGAAAGCTTAAAAACggttttgaaaataatttatttccaaaatatattttcctcTAAAACTGAGAGGATGATTGAAGATATGTGTTTTTACTGTTCATccgaaaagtattcatagtgccTCACTttctcaaaattttttttttgttacagccttattccaaaatggattaaattaatttacttcttcaaaattctacacacaataacccATTATGCAATGTGAACAGatcttttgaaattgttgcaaatttcattcatttatttactttcttttaggcttagtctctttattaatattaatctcccaacttatccagcatatgttttacacagtggatacccttccagctgcaacccatctctgggaaacatccatacatgaACTGTTAGTTTCCTCTGGAGCACAGCATTATTTAGACATCAGCTCAACAATGGCGGACAGTGATCAACAAGTGCGAGGAGACAGAGGCCTCTGCCCTCTTGCCAAGCCTCTGTGCAGCAGGCAGCAGACGGGACAGAGTCATCAATATCGGCCGCTGGCCATCGATTGGCTGTATTGATCAGGATGGGCAGTGGGGCCAGGGGAAGGAAGGGCCTGCTGGATCTCATCGAAGCAATTGTTTAGGGTCACTGACAAATTCAATTGCCTATCAGGGAgcgatcatggaaacaaacggcTGCTGTCGATGCAGGCCTGGACCCCGTGGTATCTGTCACTCAGCATTACTCCCGCTTTAACAGAGCACACATACACATGTCTGTTGGGTTACTGGGGCACTGGAGGGCAAACTCTGCCCCTGACTGACCACCAGAGCTGAACCATTTCTAGATAAACTgacatcaactgttttttttttctgtcttacaATCCGGAATAGACAATTTATTAGAGGTTCTGACAATTATATTTGCTACATTCATatataccggtcaaaagtttggggtcaattaaaaaaattttttaaagagagtttttctgtttttttgctGAATTGTTCTGTCTGGCAGCTTTTATTAATGTTGAAaagaaattgttaaatatttattacaattgtgAAGAACTgctttattgtatgtagtttcaaatgaattattactccagtcattattgtttttattactattaccattaataataataacattaataataatgatgatgataataatttatattagggtgatttctgaaggatcaggTTAGTCTGAAGATTGGAGCAATAATGctgaaaaatctttaaaatcactgaaataaatgattaaactaaattataaAGTACACAATGTtattgaacagttattttatagtgcaataacatttcaaaattatactgtatttttgattaattaatggcaggataagcttattttaaaacatttaaatatcctactgaccccaaacatttgattggtaatatgtgtgtgtgtttatatatatatatatgtatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatataacacatttatacaacagttctgtttggttcctcatacaaaaggttttttgagactctccatgtttgatattgtttttatatacacaattatgccgtcaaactgttgtataaatgcaatatcacactggtagcagtgcgatattgccaacgcacgcctcccaccagtgccgatatagagccatatcgcactgctatgagtgtgatattgctaatatataaatatatatatatgtataattttgaAAAAGTTATTGAAATACTCAAATTGACGTCTGGATTCGTTAATAGATGAATCAGCGTTTTTGAAGAATCTCACGAAtccttttaaatgtttattttttaatgaatgaataaatgaatgtatggcCAATTAATTActtataaattatgtttaaaaaatgaatcagCTTTTTTGAAGAATCTGTTAAAATTCTTATATTCAGttacaaatacagtaataaatactTCCTTGTTGCTTATATCCAAGGTCACACGGAATCCAAATTCCGCTGATTTTAGCCCATTGagtctatttgtttatttgtgtaattgtgtgtgaatttatatttatccagtttttaaattaattttactaatattattgtgatgtaatactagtaataataaaatgtccACATGATTTAtctacaatacagtttgtaaagtaatattttctgtcgtttagtgtatatatatatattttacatgagagacttgcttcAACAAATTAGTGAatctaatttgatttgcattgtaaacaccaaatgaaagttaaaaatgtataatatatttattgtatatattaggtttttagttatgatactcctaaaaccattccacataaatctgctattttttattttttattttttttacaaatttctctgcagaaatagctaaaaatgttTGCAAATTCGGTCTGGTCCTACTTATAATCAAACTTCTCTTTAAGGCAAGGGATTTCACTCGGCAGCcgtctttgaaatgcctctcgggcagtatgctcagtcattctgtctgaatggggaaacataaaattctccaaaactgtttttCCTAGTTTAAGatgacattacatatttggaacagCAATAAGGTTGCCTGGGCTAATGCGCACTCAAAAAATACaagatcacaacaccaacctcatttatggccttCTACCCAtaatcatcctctggataatgctttgtcagatcacgctggtcttctgaagtaatccacaactttgTCTTGATGGGAATCTCCTCCGGAAATGacagtgactctttgtttacaagtttgtgggcatttgagtagttgctgtcatgtgatgtgcgtttgacaggatggaTTGTACCTTGCATTTGTTTCATGCAGATTTCTAAACTACAAATTTTAAGCTTCCCGTGGATACACtgtatttcttatgtctgtgaagcaagtatttgctATGCTTTGTGACCACAaaaaactgtcgtaaaagcacacacCTGGTCCAAGCTTCTCCCTGGAGAAGCATCAGTttatagcaatcgatgattggctcctgttatagtaggcggggcttcatatGCCAAATTGATCGCTACACTTTTTCCCGTTCAGAACTACACTAGTGACATGTGttgtgtattttatagtctttgttTTAACTTAGTAATTGCTACTAGCTTCATTTGAAGCGACAAATTGCTTTCAACAAAGATATAAACCTAAGCATTTATATCTGAACCATAACCTGTAATTGCAGAATGTCTGTGGCtatttttgtttgcttattacaaaaataataatactaaagaCAAGCTGTTGTATAACCATACCTgatggctctctctctctctgggtcAGACATGAATGCGCTGCTGAGATTGTTGaaggtattataaataaatgcatattgcgATCATTTAAGATTTAGGATTGCATGGGTTGCATTGAATTGAGATCGGGATCTTTTAACAATTTATCATTCAcctctttttgtgtctttttttgggCCGACAGACTCTCAGATTCTCTGCACTTTAGTGCTCGTGGTCTAAATGAAAGCTGTATTGCACATCTTAAAACCACAAACCTGGCCTTTTGTGACATTTGCTGAGTGTGTTCAAGTCGCCTACTGCTATTGACAGATAATGTCATTCATAGATTTCCCACAGTGACAAGCATTATAGCTTTGTAAGGGTACTTGGATGTTGATTTTAAGCTTTCTTGTCAGTTTGTTGTCTTTGATCTATTCCCTTATATGCTggaacatttgtgtgtgtgtatgttttgttgtattgtAGCAGTGGAC
>TCONS_00018247
ATGAAACAACATAAACAAGATAACGAGCGGGAGCGAAAACACGCGTTCATGAAAACTTCGAAAGATTGTAACATTTCTTAACTGACGAACTTAAAGGAAAAAATGTCTGTCCTGTTGTCAGTGTTGGTCGGTGTGCTTGCTGCCTACGTATTGATTTATTATTGCTTGTTTAAAGGAGCCAGATATAAGGGGAACGCGACGTTAAATGGGAAAACAGCAATCGTTACAGGTAGTAATACAGGCATTGGCAAAACCACTGCTTTGGATCTTGCCAGAAGAGGAGCCCGAGTGATCCTCGCCTGCCGAAACCAAGAGAGAGCTGAAGCTGCAGTTTATGACATAAGAAAGGAAAGTGGGAACTCTGAGGTTCTGTACATGCACCTGGACTTGGCAAGTTTACAGTCTGTGCGGGATTTTGCAGAAACCTTTCTGAAGACAGAACCAAGGCTTGATCTGCTCATTAACAATGCTGGTCTTATTGCGTCAGGCAGAACTGAAGATGGTTTTGGCATGGCATTTGGTGTCAACCATCTGGGCCACTTTCTTCTGACGCTTTTGCTGTTGGATCGGCTGAAGCAGTCAGAGAACAGTCGTGTTGTCAATGTGTCTGCCCTGCTGCATCGCCTGGGCTCTCTGGATTTCAACCTCCTCAACACGCAGAAGGATCTGGTCACGGGGCAGTCATACTGGCACGCCATCAAAGCCTACTGCCACAGCAAACTATGCAATGTGCTCTTCACCCGAGAACTCGCAAACCGATTGGAGGGCACGAGTGTCACTTGCTATTGCCTGCATCCAGGTGTCATATCTACGGAAATTGGAAGGTATATGGGTCCGCTACAGAAACTGCTTTGCCTGCCCATGTCGAAGCTGTTTTTCCTGGACCCTGAGGCAGGTGCGCAGACCACACTTTACTGTGCTTTGCAGGAGGGCCTGGAGCCTCTGAGTGGACGCTACTTCTCATCTTGCGCTCTGCAAGAAGTTGGTGCTTTGGGACGGGATGATGCTCTGGCCAGGAAGCTTTGGGATGTGAGCGAGAGACTGTGTGGCCTGTCCTGAATGAGCTCACACAGGTTTGTGGATCAGTAGAATTAAACAAGAGATTAAAAAATGAGGAGTGAAATTCATGTAGTTCTCTTTAAgactgtaattaattttaaaggcgatttttcttattatttagatttcttcttttttttttttttttttttttgagttttcaaattttcagccaaatattgtcctattatTGCAATCTAAAAAACATTGAAACACATGACTGGTATTGTGTTCCAGAGTTACATGTATTGCTTTATAATATATCATTGCTTTATATTGCAGTTATTCtgagtcactttggtgcattacACAATACTATTtacttttgcacaacagttaggCCCaatccaattctaccccttagcccttcccctgacccctaccccttgttttgcgctTGCACGCCAAGGGGTAGGGTTGTCccgattctctttagcttgaaggcgtagggctaaaggggaaggggtgaatagcccttcaaacaaagattttttaGGATTATGGATAagaaagcatttgtgttttactgtcatgctttaaaaaaaaaaaaaaaaaa

Function

symbol description
dhrs13a.3 Predicted to enable NADP-retinol dehydrogenase activity. Predicted to be involved in retinal metabolic process. Predicted to be active in mitochondrial inner membrane. Orthologous to human DHRS13 (dehydrogenase/reductase 13).

GO:

id name namespace
GO:0042574 retinal metabolic process biological_process
GO:0005743 mitochondrial inner membrane cellular_component
GO:0052650 NADP-retinol dehydrogenase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-041114-134 Predicted to enable NADP-retinol dehydrogenase activity. Predicted to be involved in retinal metabolic process. Predicted to be active in mitochondrial inner membrane. Orthologous to human DHRS13 (dehydrogenase/reductase 13).

Ensembl:

ensembl_id ENSDARG00000041137

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00018245 False 549 mRNA 0.52 3 28006768 28082310
TCONS_00018246 False 5517 mRNA 0.37 6 28058991 28085563
TCONS_00018247 True 1615 mRNA 0.44 5 28079046 28085480

Neighbor

gene id symbol gene type direction distance location
XLOC_009282 CR391930.1 coding downstream 34294 27971298 ~ 27972474 (-)
XLOC_009280 NA coding downstream 50606 27784550 ~ 27956162 (-)
XLOC_009281 CR391930.2 coding downstream 83675 27922978 ~ 27923093 (-)
XLOC_009279 lhx1a coding downstream 296193 27703409 ~ 27710575 (-)
XLOC_009278 NA coding downstream 345651 27660245 ~ 27661117 (-)
XLOC_009285 cryba1a coding upstream 630 28086193 ~ 28107505 (-)
XLOC_009286 foxn1 coding upstream 44120 28129683 ~ 28161224 (-)
XLOC_009287 sarm1 coding upstream 102799 28188362 ~ 28200049 (-)
XLOC_009288 scarf1 coding upstream 122877 28208440 ~ 28223906 (-)
XLOC_009289 rilp coding upstream 141495 28227058 ~ 28247583 (-)
XLOC_009275 AL954187.1 non-coding downstream 348313 27642233 ~ 27658455 (-)
XLOC_009291 CR478288.1 non-coding upstream 271282 28356845 ~ 28357872 (-)
XLOC_009292 CR478288.2 non-coding upstream 289950 28375513 ~ 28375627 (-)
XLOC_009294 NA non-coding upstream 414483 28500046 ~ 28541766 (-)
XLOC_009296 NA non-coding upstream 508980 28594543 ~ 28596509 (-)
XLOC_009299 BX950186.1 non-coding upstream 649364 28734927 ~ 28735041 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000072_00404877_00406183 DHRS13A.3, DHR13 coding CI01000072 null 404877 ~ 407092 (+)