XLOC_009284


Basic Information

Item Value
gene id XLOC_009284
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 28010730 ~ 28015128 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00019183
CACTTTCGCGGTGCTACACGGAGGAGTTAAATTGAGGCAGAAAAGTGGCCATCCATTCCTTGAGGTGAGCCATCAGGACGATGCGCAATTAAACCAAAAGCAACCCTCCTGTGATCCAACACATGGCAATTAACCTGCTAATACACTGCACTGTCTCCACCGCCAGCCCTGGGACAGAGGAAAACCTGAGGATTTGACAAAATACACAATTGCTGCCAGTTTAAAAACACTTGAGCGCTGGAACAGGCAGCCTGGTAATGGAATCGCAGCAGGTAAAGCAGACTTGCCCATCCGATGGCGGCGCAGGGCATCGTCCATATTACGGCACGGTTGTGTGCAGGCGTGGCACGGTTCCGGGCATCAAAGGGGGTGTGCCACCCACCCCCCGCAGTGACCCTCTgcagagacagacagacggacagatggagc

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00019183 True 429 lncRNA 0.54 3 28010730 28015128

Neighbor

gene id symbol gene type direction distance location
XLOC_009282 CR391930.1 coding downstream 38256 27971298 ~ 27972474 (-)
XLOC_009280 NA coding downstream 54568 27784550 ~ 27956162 (-)
XLOC_009281 CR391930.2 coding downstream 87637 27922978 ~ 27923093 (-)
XLOC_009279 lhx1a coding downstream 300155 27703409 ~ 27710575 (-)
XLOC_009278 NA coding downstream 349613 27660245 ~ 27661117 (-)
XLOC_009285 cryba1a coding upstream 71065 28086193 ~ 28107505 (-)
XLOC_009286 foxn1 coding upstream 114555 28129683 ~ 28161224 (-)
XLOC_009287 sarm1 coding upstream 173234 28188362 ~ 28200049 (-)
XLOC_009288 scarf1 coding upstream 193312 28208440 ~ 28223906 (-)
XLOC_009289 rilp coding upstream 211930 28227058 ~ 28247583 (-)
XLOC_009275 AL954187.1 non-coding downstream 352275 27642233 ~ 27658455 (-)
XLOC_009291 CR478288.1 non-coding upstream 341717 28356845 ~ 28357872 (-)
XLOC_009292 CR478288.2 non-coding upstream 360385 28375513 ~ 28375627 (-)
XLOC_009294 NA non-coding upstream 484918 28500046 ~ 28541766 (-)
XLOC_009296 NA non-coding upstream 579415 28594543 ~ 28596509 (-)
XLOC_009299 BX950186.1 non-coding upstream 719799 28734927 ~ 28735041 (-)
XLOC_009277 AL954187.3 non-coding downstream 356438 27654176 ~ 27654292 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000072_00441183_00448301 NA coding CI01000072 null 440626 ~ 448472 (+)