XLOC_009288 (scarf1)


Basic Information

Item Value
gene id XLOC_009288
gene name scarf1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 28208440 ~ 28223906 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00018258
ATGGACACCTTTCTGACCTCATTTGGACTGATGCTCATGTGTGTCCAGTACTCAGCTCAGAGACTCTCTCTGACCGGGAAGAACGTCTGCCTCAGTGTCAGGGATTCCTCTGCAATATGTTGTTCTGGATGGGGCCAGAGCGGTGATGAATGCACTGTCCCTCTCTGTGAGGGAGAAAGAGCCTGTCTGCAGGATGAAGTGTGTGTTTACCCTGGACTCTGTCGATGTAAAGCTGGATTTTACGGGTACCAGTGCAAAGCTCCTTGTCCTCCTGAGTTTTGGGGACCAGACTGTCGCGAGTTCTGTCCCTGCCACCCTCACGGACTCTGTGATCCAGCCACTGGCGTATGCTCATGCCTGCCCAACCGCTGGGGCAGCTTGTGCCAGAACAGCTGCAAATGTGGCCGCCATGGCAAATGTGACCCTGTCTATGGGAACTGCACCTGTGAGGAGGGCTGGTGGACATCCACTTGCTCCAAAGCATGTCAGTGCCACCTCGCTACCTCCACCTGTGACCAAGCCACAGGCCGCTGCATTTGCAATGAGGGCTATTGGGGCCAAAAGTGCAGCCTGCCATGCAACTGCTATGTGTCCCCTTGTCAGCAGCGCACTGGGACATGCCAGTGCCTGCATGGCTGGTGGGGCCCGTCCTGTGACCGCCGCTGCATTTGCAATCTCAACAATGCTGACTGTGATGTGCAAACTGGTGGCTGTTTGTGCTACCCAGGTTACAAAGAGCCTTTCTGCAATGAGCCTTGTGACAGTGGAAAATATGGCCGAGGCTGTAAGAACAGCTGTGGACGTTGTGAAGGAGGCAGGCCTTGCTCTAAGCTGGACGGCCTGTGTGATGCCTGTGAACCAGGATGGAATGGCACTCGCTGTGATCAACGCTGTCCTGCGGGTTATTATGGCCATCGCTGCCAAGAAATTTGTCCGCATTGTCGAAACATGGACCCATGTGACCCGGAAACTGGTGCATGTTTGCAGTGTAATCCTGGCTGGACTGGACCAAGATGTGACAAACCCTGCACAGATGGTAGATACGGAGATGGCTGTCGCTTCCTCTGTAAAACTTGCAATCATGGCCACTGCGACCATGTGACAGGAAGATGCATTTGTCTTCCTGGCTTTCAGGGTGAGAGCTGTAACAGCACATGTCCTTTTAATCTTTATGGCTTCAACTGCTCCTCCACATGTGATTGTGGAAGTCAAGCCTGCCATCCAGCCACTGGGGCTTGTCCAAACAGTAGCAGAGCTGGTCTTTTAGCAGGGCTTTTGATTCCTCTCTGCATATTAATACTCGCCTTGTtgttctgctgctgctgttgtggGAGGCCAGTCGAAGGAAAGGAAAGGGTCACAGTTGGAGATGGCAGTCCTGCAGTCCGCATGAAGCACCATGTTTATACTGTGTTGGCCAACATGGGTTCAGCAATGCCTTGCATCACTCTTTGGTCATCTGGTTTGCCCAGGGTTACTGTCTCGCATCATGATCCTGAGCTCACATTTAACCACAGCTTCATCGAGCAGCCATCATCCGGCTGGGTAATAGATTCATTCGAAACTGATGAGGATGGAGAAGCTGTTTACTGCGAACCACCCAGGGAAGATGTTCTTACAGAGGCCGGCGGAGAGCTTCAGGAGCTGAATTCCAAGTGTAACTTCTTCCCTGACCCATCAACCTTCAGCAGCGAGGACATGTCACAAGCTTTTGGCATCCCCCGTACCTCCAGCATCGCCAAATCCAAACGCCCTTCAGTGTCATTCGCAGAGGGTACAAAGTTCAGCCCAAAAGAGCGTCGCAGTTCAACTCAAGATCTGCAAGGGACCGCTCGAAAACCCAAACCCTGGGGTGTCCTGATGATCTCCGCCCTGCAAGGAGGACAGGGAAACCAGAATAACGAAACGGAAAcagagaaagaagaaaaaaacgatGAGGAGAACATCTCTGAGGAGCAAAGAGCTTCCTCTGAAACACTACAAAATGATTCGGAAAGATATAGTTCGGGCCCACAGAGAACTCACCTCACTGTACCCGGTGGAAGACGACGCACTCTTTCTAACCCCAAAAAGAACATCCAGTCATCTGACGGCGGACAGGACGCAGATTCAGAGAAGTTAACAACAGTATACGTTACTGTAGGTAAGACCTCCAAAATGGTCAAGCAAGAGCCTCCTTCAGAAGGGCCTGTTCAGGCGATGCTGCGCAGACTAGGAAGCCTCCAGAGGCAAAAAGAAGAAGTTGCTAAAGGCAAGGCCCAATCGATTGTTAAGCCTCCACGGAGGAAACTAGGTGCCCGAGCCAGTGCATGGGAGCAAGCGAGCGGGTCAGGCCAATCAGAAGTGGTCATGAGGAAACCCAGTCGTAAAAAACACAGCTCTCTCAGCTCTCCATGCATAGTCGGGGCAATAGACTCTCCTCAAGAGAACAGCGCCCCCAAGAGGCCGCTGTCCTCCATTTTAAAAAGTGTTCCTGAGAGTGATCCATTTCAAAGTTTAGAGGTGGAACCGAACAGTGAGGAGACTGGCATACAGACTGAGCACACTTATGAGACTGTGGCTCTGCCTGACACTGTGTCCACCTCTTCAGAGATTATTATTAATGACACAGTTATGGACCAAGCAGAAAATGAGCCCAATTATGAGAATGTTTATTTAAAGCATTGATAACACTGCTACATCTTATGCTTTTAAGAGTGTGTtcacaatttaattattttggtttaaCAGATTCCGAAccaataatgaaaaaatatttgttgaagtcaaaatgattagccctcttgtgaatttctttttctttttcaataatttcctaaacgatgtttaacagagaaaggaatttttttttttttactgtatttcctataatattttttttttcttttggaaaaagtcttatttgttttatttggctagaataaaagcagttttatttttaacaaattattttaaggtcaatattattagcctccttaagcaatattttttcctcgattgtctacagaacaaaccacttatgcaatgacttgcctaattaaccttgttaagcctttaaatgtcacttcaagctaaatactagtatctcgaaaactatctagtaaaatattatggacTGTCATtatggtaaagataaaagaactcagttactagaaattagttattaaaactattatgtttagaaatgtgttgaaaactacATACAGAAAagtatatacaaaaaataataactctaataattattatttaaattatactactaattctgacttcaactgtatatttagcaACAGATATAGTTTTAAACACATTCATTctatgtgtatgcatgtgaagACATTTTATCATTTGAGAACTAAATTGTGTAAAGGCAAAAAAAGACGCACAAATCAAAATCTACTACAAACTTTTGAGACAAATTTCTGACATCTGTAGGTGAACGAGTAATATTGTGCCTATGAAGAGAAACATCTGTGAACACACTCTTAAAGGGCATTACTTTCTTCTTTAACttgtactgtatgttttaattatataaacaCATCTGCTTAAAAAAGATGTTTTGCTCTTTCATGTCATTTGCATTAAATtgaaattgctattttaaaaagaaagaaaagaaaaaaaactaattttaaaggatattttaaatattttattgagaTGTTCCTCTTACATACCAGATATAACTGATGTTTTCATACACAGATAACCAGAGGGTTGAGGATAGTaagttttttttactaattaaattaacactttaaatctgataatcaaaacataaatattataaaagtttTGAGTCCCCAAAAAATCTTTCAGTGAACATTTTAAGCAGCTCAAATGTTTTCAACAGTGAGGATATtaagacattgttttttttttgtgtgtgcaccaAATCAGCACAACAGAATGATTTCTAAATGATCCTGTCACACTGAAAACATGAGTACAGATGCAGATGTTTGCTTTTCCAGCAGAggtagaattttcattttaaaatatgttcaaaTTAAATTTCCAATTGCAATAAATCATATTTCACATTATCactgttttaatgcattttactGTGGTGTAAATCTATACTGAGCCAAGACATGAACCCCACAGCAATTATGCAGGAAATaactttcttatatatatatatatatttttttttttaaatgcacctgGCTTGGAATAATTTGACAGGTACTTCCTGTGTCTTTTCTCTTAAGGCTGTATATGTTCCTGTGCAATGGCATGTTTTGGTTTTTGGCCTCTCTATGCATGATAAATGAGGATCAGTCTTTACATGCATCCCTAAAGAGCAGTTGTTCTTGGCAGAATGACTCTGATCATGTAATATGAGGTTATGTAGATAAACTTTGCCTTATAAAACTGCCTGCTATTGGCAGTAGACTAAGAATGGAGCATGAAACCACAATAAACAGATAACGTGTGTCAAAACATTGACTGGAAATGTTCATGACATTGGTTGTTGGCAGTAAAAACCACAAGAAACTGTCTTTAACTGTGCCGATTAAGATAAAAGCCAAAAAGTGAAAGCAATTCCTGTTAATACGGTGTAATTAAGAGAACTTTCAAAGGCATTGATGTTTATTGAAGATTGCAGACGatctttttattttcatattagtaCAATTCTAATATGATCAAATCCATATATTGGTTCATTAAAGCTGTTATACTTTGAATAAAAATTACATGATGACTGAGCATGAGTAAGAATATAACTCAGAGTAGTTCCTACGGTGGCCTGTAAAACATTATGAATAGCGTCTTTCTATTAGTGTGAAAACCAGCACAGATATTGTATAAAGGAACttatttttgttgtatgataAATACTATTGAATGGCAGTGTTTTATAGATGGACTCATCGTTTTTCTGCTCCCGACGTGTCTTTGCAGCCAAGCCAGTATTTTCCAATAGGTCTTGGGTATGGAGGGTTGGCATAGTCAACACGCTTCGTTTGGAGATTCACTCTGTAATACTTATCtgtaaaaaacaaatatgaaaatgtcaCCTGAATACAATATAATGGATTAGAGTAGAATAAAAATGATATCTGAAAG
>TCONS_00018259
GGAAACTTGCAGAGGAAACAAAGGGATTCGGAGAGCCCATTTTGCTAAAGGGACTCGACTGGATCTTTTCTGTTCCACTAATACAAAACTAACCTGTACTGGTGCTGTGGTGGGAGAAGGTGGCACAGGTTTTGGTCGGTCCGGAGGGAATGGACACCTTTCTGACCTCATTTGGACTGATGCTCATGTGTGTCCAGTACTCAGCTCAGAGACTCTCTCTGACCGGGAAGAACGTCTGCCTCAGTGTCAGGGATTCCTCTGCAATATGTTGTTCTGGATGGGGCCAGAGCGGTGATGAATGCACTGTCCCTCTCTGTGAGGGAGAAAGAGCCTGTCTGCAGGATGAAGTGTGTGTTTACCCTGGACTCTGTCGATGTAAAGCTGGATTTTACGGGTACCAGTGCAAAGCTCCTTGTCCTCCTGAGTTTTGGGGACCAGACTGTCGCGAGTTCTGTCCCTGCCACCCTCACGGACTCTGTGATCCAGCCACTGGCGTATGCTCATGCCTGCCCAACCGCTGGGGCAGCTTGTGCCAGAACAGCTGCAAATGTGGCCGCCATGGCAAATGTGACCCTGTCTATGGGAACTGCACCTGTGAGGAGGGCTGGTGGACATCCACTTGCTCCAAAGCATGTCAGTGCCACCTCGCTACCTCCACCTGTGACCAAGCCACAGGCCGCTGCATTTGCAATGAGGGCTATTGGGGCCAAAAGTGCAGCCTGCCATGCAACTGCTATGTGTCCCCTTGTCAGCAGCGCACTGGGACATGCCAGTGCCTGCATGGCTGGTGGGGCCCGTCCTGTGACCGCCGCTGCATTTGCAATCTCAACAATGCTGACTGTGATGTGCAAACTGGTGGCTGTTTGTGCTACCCAGGTTACAAAGAGCCTTTCTGCAATGAGCCTTGTGACAGTGGAAAATATGGCCGAGGCTGTAAGAACAGCTGTGGACGTTGTGAAGGAGGCAGGCCTTGCTCTAAGCTGGACGGCCTGTGTGATGCCTGTGAACCAGGATGGAATGGCACTCGCTGTGATCAACGCTGTCCTGCGGGTTATTATGGCCATCGCTGCCAAGAAATTTGTCCGCATTGTCGAAACATGGACCCATGTGACCCGGAAACTGGTGCATGTTTGCAGTGTAATCCTGGCTGGACTGGACCAAGATGTGACAAACCCTGCACAGATGGTAGATACGGAGATGGCTGTCGCTTCCTCTGTAAAACTTGCAATCATGGCCACTGCGACCATGTGACAGGAAGATGCATTTGTCTTCCTGGCTTTCAGGGTGAGAGCTGTAACAGCACATGTCCTTTTAATCTTTATGGCTTCAACTGCTCCTCCACATGTGATTGTGGAAGTCAAGCCTGCCATCCAGCCACTGGGGCTTGTCCAAACAGTATCAGAGCTGGTCTTTTAGCAGGGCTTTTGATTCCTCTCTGCATATTAATACTCGCCTTGTtgttctgctgctgctgttgtggGAGGCCAGTCGAAGGAAAGGAAAGGGTCACAGTTGGAGATGGCAGTCCTGCAGTCCGCATGAAGCACCATGTTTATACTGTGTTGGCCAACATGGGTTCAGCAATGCCTTGCATCACTCTTTGGTCATCTGGTTTGCCCAGGGTTACTGTCTCGCATCATGATCCTGAGCTCACATTTAACCACAGCTTCATCGAGCAGCCATCATCCGGCTGGGTAATAGATTCATTCGAAACTGATGAGGATGGAGAAGCTGTTTACTGCGAACCACCCAGGGAAGATGTTCTTACAGAGGCCGGCGGAGAGCTTCAGGAGCTGAATTCCAAGTGTAACTTCTTCCCTGACCCATCAACCTTCAGCAGCGAGGACATGTCACAAGCTTTTGGCATCCCCCGTACCTCCAGCATCGCCAAATCCAAACGCCCTTCAGTGTCATTCGCAGAGGGTACAAAGTTCAGCCCAAAAGAGCGTCGCAGTTCAACTCAAGATCTGCAAGGGACCGCTCGAAAACCCAAACCCTGGGGTGTCCTGATGATCTCCGCCCTGCAAGGAGGACAGGGAAACCAGAATAACGAAACGGAAAcagagaaagaagaaaaaaacgatGAGGAGAACATCTCTGAGGAGCAAAGAGCTTCCTCTGAAACACTACAAAATGATTCGGAAAGATATAGTTCGGGCCCACAGAGAACTCACCTCACTGTACCCGGTGGAAGACGACGCACTCTTTCTAACCCCAAAAAGAACATCCAGTCATCTGACGGCGGACAGGACGCAGATTCAGAGAAGTTAACAACAGTATACGTTACTGTAGGTAAGACCTCCAAAATGGTCAAGCAAGAGCCTCCTTCAGAAGGGCCTGTTCAGGCGATGCTGCGCAGACTAGGAAGCCTCCAGAGGCAAAAAGAAGAAGTTGCTAAAGGCAAGGCCCAATCGATTGTTAAGCCTCCACGGAGGAAACTAGGTGCCCGAGCCAGTGCATGGGAGCAAGCGAGCGGGTCAGGCCAATCAGAAGTGGTCATGAGGAAACCCAGTCGTAAAAAACACAGCTCTCTCAGCTCTCCATGCATAGTCGGGGCAATAGACTCTCCTCAAGAGAACAGCGCCCCCAAGAGGCCGCTGTCCTCCATTTTAAAAAGTGTTCCTGAGAGTGATCCATTTCAAAGTTTAGAGGTGGAACCGAACAGTGAGGAGACTGGCATACAGACTGAGCACACTTATGAGACTGTGGCTCTGCCTGACACTGTGTCCACCTCTTCAGAGATTATTATTAATGACACAGTTATGGACCAAGCAGAAAATGAGCCCAATTATGAGAATGTTTATTTAAAGCATTGATAACACTGCTACATCTTATGCTTTTAAGAGTGTGTtcacaatttaattattttggtttaaCAGATTCCGAAccaataatgaaaaaatatttgttgaagtcaaaatgattagccctcttgtgaatttctttttctttttcaataatttcctaaacgatgtttaacagagaaaggaatttttttttttttactgtatttcctataatattttttttttcttttggaaaaagtcttatttgttttatttggctagaataaaagcagttttatttttaacaaattattttaaggtcaatattattagcctccttaagcaatattttttcctcgattgtctacagaacaaaccacttatgcaatgacttgcctaattaaccttgttaagcctttaaatgtcacttcaagctaaatactagtatctcgaaaactatctagtaaaatattatggacTGTCATtatggtaaagataaaagaactcagttactagaaattagttattaaaactattatgtttagaaatgtgttgaaaactacATACAGAAAagtatatacaaaaaataataactctaataattattatttaaattatactactaattctgacttcaactgtatatttagcaACAGATATAGTTTTAAACACATTCATTctatgtgtatgcatgtgaagACATTTTATCATTTGAGAACTAAATTGTGTAAAGGCAAAAAAAGACGCACAAATCAAAATCTACTACAAACTTTTGAGACAAATTTCTGACATCTGTAGGTGAACGAGTAATATTGTGCCTATGAAGAGAAACATCTGTGAACACACTCTTAAAGGGCATTACTTTCTTCTTTAACttgtactgtatgttttaattatataaacaCATCTGCTTAAAAAA

Function

symbol description
scarf1 Predicted to enable scavenger receptor activity. Predicted to act upstream of or within receptor-mediated endocytosis. Predicted to be integral component of membrane. Is expressed in lateral mesoderm. Orthologous to human SCARF1 (scavenger receptor class F member 1).

GO:

id name namespace
GO:0006898 receptor-mediated endocytosis biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005044 scavenger receptor activity molecular_function

KEGG:

id description
ko04131 Membrane trafficking
ko04990 Domain-containing proteins not elsewhere classified

ZFIN:

id description
ZDB-GENE-030131-8778 Predicted to enable scavenger receptor activity. Predicted to act upstream of or within receptor-mediated endocytosis. Predicted to be integral component of membrane. Is expressed in lateral mesoderm. Orthologous to human SCARF1 (scavenger receptor class F member 1).

Ensembl:

ensembl_id ENSDARG00000077285

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00018258 False 5082 mRNA 0.41 11 28208440 28223757
TCONS_00018259 True 3705 mRNA 0.45 11 28209966 28223906

Neighbor

gene id symbol gene type direction distance location
XLOC_009287 sarm1 coding downstream 8391 28188362 ~ 28200049 (-)
XLOC_009286 foxn1 coding downstream 47216 28129683 ~ 28161224 (-)
XLOC_009285 cryba1a coding downstream 100935 28086193 ~ 28107505 (-)
XLOC_009283 dhrs13a.3 coding downstream 122877 28006768 ~ 28085563 (-)
XLOC_009284 NA coding downstream 193312 28010730 ~ 28015128 (-)
XLOC_009289 rilp coding upstream 3152 28227058 ~ 28247583 (-)
XLOC_009290 prpf8 coding upstream 24146 28248052 ~ 28262709 (-)
XLOC_009291 CR478288.1 coding upstream 132939 28356845 ~ 28357872 (-)
XLOC_009292 CR478288.2 coding upstream 151607 28375513 ~ 28375627 (-)
XLOC_009293 git1 coding upstream 207715 28431621 ~ 28480576 (-)
XLOC_009280 NA non-coding downstream 252278 27784550 ~ 27956162 (-)
XLOC_009281 CR391930.2 non-coding downstream 285347 27922978 ~ 27923093 (-)
XLOC_009278 NA non-coding downstream 547323 27660245 ~ 27661117 (-)
XLOC_009277 AL954187.3 non-coding downstream 554148 27654176 ~ 27654292 (-)
XLOC_009294 NA non-coding upstream 276140 28500046 ~ 28541766 (-)
XLOC_009296 NA non-coding upstream 370637 28594543 ~ 28596509 (-)
XLOC_009299 BX950186.1 non-coding upstream 511021 28734927 ~ 28735041 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000072_04796909_04805902 NA coding CI01000072 null 4796780 ~ 4805902 (-)