XLOC_009290 (prpf8)


Basic Information

Item Value
gene id XLOC_009290
gene name prpf8
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 28248052 ~ 28262709 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00018261
CCGGAAGTTGGGTCCTACGCATTTTCTTACGTTCGAAGTCGTAGCTTGTTATCATTTCCGTTGAGGTAGAATTGTTCAGATACGTAAGCGCTTTGGAGAATGGAAAGACTCTACGCACAACGTGCATAGTACGCCATTCCGCTGAGCACAAAACCACCGTACAACTACAGTCACTGGCGAGAAACTGCTTTTAACTTAGACGCTGCCATGGCAGCTCCTTTCCCCTACAGAGGTCTTCCTGGACCAATGCCTCCAGGTGttcctccacctcctcctgcTGTTGCTCCAGTGCCAGATTATATGACTGAGGAGAAACTGCAAGAGAAAGCTCGTAAATGGCAGCAGCTGCAGGCCAAGCGCTACTCTGAGAAAAGGAAATTTGGCTTCGTGGATGCTCAGAAAGAGGACATGCCACCAGAACATGTGCGCAAAATTATCAGGGATCATGGTGACATGACGAACAGGAAATTTCGTCATGATAAAAGAGTCTACCTAGGGGCCCTGAAGTATATGCCCCATGCAGTGCTCAAACTGCTGGAGAACATGCCAATGCCCTGGGAGCAGATCAGAGATGTACCTGTGCTCTACCACATCACAGGCGCTATATCTTTCGTGAATGAAATCCCTTGGGTTATTGAGCCAGTGTACATTTCTCAGTGGGGCACAATGTGGATCATGATGCGTCGTGAGAAGAGAGACAGACGGCACTTCAAGCGCATGCGTTTCCCGCCATTTGATGATGAAGAGCCTCCTTTGGATTATGCAGACAACATCCTGGATGTGGAGCCTCTGGAGGCGATCCAGATGGAGCTGGACCCTGATGAGGACTCTTCTGTCACAGACTGGCTCTATGAGCATCAACCTCTGAAAGACACCACCAAATACGTGAATGGGACCACATACAGACGATGGCAATTCACTTTGCCAATGATGTCCACTCTGTATCGATTGGCTAATCAGCTGCTGACAGACTTGGTGGATGACAATTACTTTTACTTGTTTGACTTGAAAGCTTTCTTCACCTCTAAAGCTTTGAACATGGCCATTCCTGGAGGACCTAAATTTGAGCCACTTGTCAGAGACATTAACCTCCAGGATGAAGACTGGAATGAGTTCAATGACATCAACAAGATCATCATCAGACAGCCAATCAGGACAGAATACAAAATTGCATTCCCTTACTTGTACAACAATCTGCCACATCATGTGCACCTCACCTGGTACCATACACCAAATGTGGTGTTCATCAAGACTGAAGATCCTGATCTACCCGCCTTCTACTTTGACCCTCTGATCAACCCCATCTCTCATAGGCACTCAGTCAAGAGCCAAGAGCCACTGCCAGATGATGATGAGGAGTTTGAACTTCCTGAGTATGTAGAGCCGTTCCTGAAGGAGACGCCGCTTTACACTGACAACACTGCTAATGGAATCGCTCTGTTGTGGGCACCTCGTCCATTCAATCTCCGCTCTGGAAGAACCAGACGAGCCATTGATGTTCCTCTCGTCAAAAACTGGTATCGTGAGCACTGTCCTGCAGGCCAGCCTGTGAAGGTGCGTGTGTCTTACCAGAAGCTTCTGAAGTACTATGTGTTGAATGCTCTAAAACACAGACCACCAAAGGCACAGAAAAAGAGATACCTGTTCCGCTCTTTCAAGGCCACCAAATTCTTCCAGTCAACAAAGCTGGACTGGGTAGAAGTCGGACTCCAGGTGTGCCGGCAGGGCTACAACATGCTGAACCTGCTGATTCACAGAAAGAACCTGAACTACCTGCACTTGGACTACAACTTCAACTTGAAGCCTGTAAAAACCCTCACAACAAAGGAACGTAAGAAGTCTAGATTCGGAAATGCGTTTCACTTGTGCCGTGAGGTTCTGCGCTTGAGCAAGCTGGTGGTGGACAGTCATGTACAGTACAGGCTTGGAAATGTTGATGCTTTCCAGCTTGCTGATGGCTTGCAGTACATCTTTGCCCATGTGGGTCAACTGACTGGCATGTACCGCTACAAGTACAAGCTCATGAGGCAGATCAGAATGTGCAAAGACCTGAAGCATCTCATCTACTATCGCTTCAACACAGGCCCAGTTGGAAAAGGTCCAGGCTGTGGGTTCTGGGCACCAGGATGGAGAGTCTGGCTGTTCTTCATGAGAGGCATTACCCCTCTTTTGGAGCGGTGGCTCGGCAATCTTCTGGCTAGGCAGTTTGAGGGTCGACACTCTAAGGGTGTTGCCAAGACTGTGACCAAACAGCGTGTGGAATCTCACTTTGATCTGGAGCTGAGAGCTGCTGTGATGCATGACATCCTGGATATGATGCCTGAGGGTATCAAGCAAAACAAGGCCAGAACCATCTTGCAGCACCTCAGTGAGTCATGGAGATGCTGGAAGGCCAACATTCCTTGGAAGGTTCCTGGGCTTCCAACTCCCATCGAGAACATGATTCTTCGTTACGTGAAGGCTAAAGCTGACTGGTGGACCAACACGGCTCACTACAACCGTGAGAGAATCAGAAGAGGAGCAACTGTGGATAAGACTGTGTGCAAGAAGAACTTGGGACGTCTCACTCGACTCTACCTAAAAGCAGAGCAGGAGAGACAGCACAATTACCTGAAGGATGGGCCTTACATCACAGCTGAGGAGGCCGTGGCCATCTACACCACCACAGTGCACTGGCTGGAGAGTCGTCGGTTCTCTCCGATTCCCTTCCCTCCTCTCTCCTACAAGCATGACACCAAGCTGCTCATTCTGGCGTTGGAGAGACTCAAGGAAGCTTACAGtgtgAAGTCTAGGCTGAACCAGTCACAGCGTGAGGAGTTGGGTCTGATTGAGCAGGCCTATGACAACCCTCATGAGGCTCTGTCCAGAATCAAACGTCACCTCCTCACTCAGAGAGCCTTCAAAGAGGTTGGCATTGAGTTCATGGACCTTTACAGTCACTTGGTGCCGGTTTATGATGTTGAACCTTTGGAAAAGATCACTGACGCATACCTGGATCAGTACCTGTGGTACGAGGCAGACAAACGTAGGCTTTTCCCACCCTGGATCAAACCAGCTGACACAGAGCCACCACCACTGCTGGTGTACAAATGGTGCCAAGGAATCAACAACTTGCAGGATGTATGGGAGACAGCAGAGGGTGAATGTAATGTTATGCTGGAGTCTCGCTACGAGAAGATGTATGAGAAGATTGATCTGACGCTGCTGAACAGGCTTCTGCGTCTCATTGTTGATCACAACATTGCTGATTACATGACAGCTAAAAACAACGTTGTCATTAACTATAAGgaCATGAACCATACAAACTCGTACGGTATCATTCGTGGCCTGCAGTTTGCCTCTTTCATTGTGCAGTACTATGGACTTGTGATGGACCTGCTGGTGCTGGGTCTGCACAGAGCCAGTGAGATGGCAGGACCTCCTCAGATGCCTAATGATTTCCTCAGCTTCCAGGATACGGCCACTGAGAGCGCGCATCCCATCCGTCTGTACTGCAGATATATAGACCGCATTCATATCTTCTTCAGGTTCTCTGCTGATGAGGCCAGAGATTTGATCCAGAGGTACCTGACTGAGCACCCGGACCCCAACAATGAGAACATTGTGGGGTACAACAATAAGAAATGCTGGCCTCGAGATGCTAGGATGAGACTGATGAAACATGATGTCAACTTGGGTCGTGCTGTGTTCTGGGACATCAAAAATCGCCTCCCTCGTTCAGTGACCACAATTCAATGGGAGAACAGTTTTGTGTCTGTGTACAGCAAGGACAACCCCAATCTGCTCTTTAACATGTGTGGCTTTGAGTGTCGCATACTCCCGAAGTGTCGCACTAGTTATGAGGAGTTCACTCACAAAGATGGTGTTTGGAATTTGCAGAATGAGGTAACAAAAGAAAGGACAGCACAGTGTTTCCTGCGTGTAGATGATGAGTCCATGCAAAGGTTCCACAATAGAGTGCGACAAATTTTGATGGCTTCTGGGTCCACCACTTTCACCAAGATCGTGAATAAGTGGaacactgctctgattggtctgatgacctaCTTCCGTGAAGCTGTGGTCAACACTCAAGAGCTTCTGGACCTGTTGGTGAAGTGTGAGAATAAGATCCAAACCCGTATCAAGATTGGGTTGAACTCCAAAATGCCCAGCCGTTTTCCTCCTGTGGTGTTTTATACCCCTAAGGAGTTGGGTGGATTGGGAATGCTTTCCATGGGACACGTACTGATCCCACAGTCTGACCTTAGGTGGTCCAAACAGACCGATGTGGGTATCACTCATTTCCGCTCTGGTATGAGTCATGAGGAGGATCAGCTTATTCCTAATCTGTACCGCTACATCCAGCCATGGGAGAGTGAGTTCATTGATTCTCAGAGAGTTTGGGCTGAATATGCCCTCAAGCGACAGGAGGCCATTGCTCAGAACAGACGTTTGACACTGGAGGATTTGGAGGACTCCTGGGACAGAGGTATTCCACGTATCAACACCCTCTTCCAGAAGGACAGACATACTCTTGCTTATGATAAGGGCTGGAGAGTCAGAACAGACTTCAAGCAATACCAGgtGCTGAAGCAAAATCCATTCTGGTGGACTCACCAAAGGCATGATGGAAAACTATGGAATTTGAACAATTACCGAACAGACATGATCCAGGCACTTGGAGGGGTTGAAGGCATTCTTGAGCACACACTGTTCAAGGGTACCTACTTCCCTACCTGGGAGGGTCTCTTCTGGGAGAAGGCCAGTGGTTTTGAAGAGTCTATGAAATGGAAGAAGCTCACTAATGCTCAGAGATCTGGTCTGAACCAGATTCCTAACCGACGATTCACCTTGTGGTGGTCTCCTACCATCAACAGAGCCAACGTATATGTAGGTTTCCAAGTGCAGTTGGACCTCACTGGAATCTTCATGCATGGTAAAATCCCAACCCTCAAGATCTCTTTGATCCAGATCTTCAGAGCTCACTTGTGGCAGAAAATTCATGAGAGCATTGTCATGGATCTCTGTCAGGTGTTTGACCAAGAGCTGGATGCTTTGGAGATTGAGACTGTCCAAAAAGAGACAATCCATCCCAGGAAGTCTTACAAGATGAATTCCTCCTGTGCGGACATTCTTCTGTTTGCCTCCTACAAGTGGAATGTCTCACGCCCCTCACTTCTAGCAGATTCCAAGGATGTAATGGACAGCACCACCACACAGAAATTCTGGATTGACATTCAGCTCAGATGGGGTGACTATGACTCTCATGACATTGAGAGATATGCCAGGGCCAAGTTCTTGGACTACACCACTGACAACATGAGTATTTACCCATCACCCACTGGAGTTCTGATTGCCATTGATCTGGCCTACAATCTTCACAGTGCCTATGGAAACTGGTTTCCCGGAGCCAAGCCTCTGATCCAGCAGGCAATGGCAAAGATAATGAAGGCCAATCCGGCTCTGTATGTGTTAAGAGAGCGAATCCGCAAGGGTCTGCAACTCTACTCTTCAGAGCCCACTGAGCCTTACCTGTCCTCCCAGAACTATGGAGAGCTCTTCTCAAACCAGATCATCTGGTTTGTAGATGACACCAATGTGTACAGAGTCACCATCCACAAGACCTTTGAAGGTAACTTGACCACCAAACCCATCAATGGAGCCATTTTCATCTTCAACCCCAGAACTGGACAGCTTTTCTTGAAGATCATTCACACTTCTGTATGGGCTGGACAAAAGCGTCTTGGACAGTTGGCTAAGTGGAAGACTGCTGAAGAAGTGGCTGCCCTGATCCGATCGCTGCCTGTTGAAGAGCAGCCCAAACAGATTATTGTGACCAGGAAGGGCATGTTGGATCCTCTTGAGGTGCACTTGCTGGACTTCCCCAACATTGTAATCAAAGGCTCTGAGCTCCAGCTCCCCTTCCAGGCCTGTTTGAAAGTGGAGAAGTTTGGAGACCTCATTCTGAAGGCCACAGAGCCTCAGATGGTCCTGTTCAATCTGTATGACGACTGGCTGAAGACCATCTCCTCTTACACTGCATTCTCTCGTTTGATTTTGATCCTGAGAGCGCTTCATGTCAACAATGATCGTGCCAAAGTTATTCTGAAACCTGACAAGACCACCATTACCGAGCCCCACCACATCTGGCCCACTCTGACGGATGAGGAGTGGATCAAAGTGGAGGTGCAGCTCAAAGATCTCATCCTGGCTGACTATGGCAAGAAGAACAATGTGAATGTGGCATCTTTGACTCAGTCTGAAATCAGGGACATCATCCTGGGAATGGAAATCTCTGCTCCATCCCAGCAGAGACAGCAGATCGCTGAGATTGAGAAGCAGACCAAAGAGCAGTCTCAGCTTACGGCCACTCAGACTCGCACAGTCAACAAACACGGAGATGAGATCATCACCTCCACCACCAGCAACTACGAGACGCAGACCTTCTCTTCCAAAACTGAATGGAGAGTAAGGGCGATCTCTGCTGCAAACTTGCACTTGCGTACCAACCACATCTATGTGTCATCGGATGACATCAAAGAAACGGGCTACACTTACATCCTGCCCAAGAACGTTCTGAAGAAGTTCATCTGCATCTCAGATCTGCGTGCTCAGATTGCAGGTTACCTGTATGGAACCAGCCCTCCAGATAACCCTCAGGTGAAGGAGATCCGCTGTATTGTGATGGTGCCACAGTGGGGTACACATCAGACCGTTCACCTTCCCAACCAACTGCCACAACACGAGTACTTGAAGGAAATGGAGCCTCTTGGATGGATCCATACACAGCCCAATGAATCGCCCCAGCTCTCTCCTCAGGATGTCACCACCCATGCAAAGGTCATGGCTGACAACCCATCCTGGGATGGCGAAAAGACTATCATTATCACTTGCAGCTTCACCCCTGGTTCCTGCACACTGACGGCCTACAAGCTGACTCCCAGTGGATATGAGTGGGGTCGACAAAACACAGATAAGGGTAATAACCCCAAAGGTTACTTGCCTTCACACTATGAAAGGGTTCAGATGCTTTTGTCTGACCGTTTCCTTGGCTTCTTCATGGTGCCTGGCCAAGTCTCCTGGAACTACAACTTCATGGGTGTCCGCCATGATCCCAACATGAAGAGGGTGAAATCTACAATGCTGACCGTGAGGATATGTATGCATAAGTACAAACAGAGACTATTTAAAGTAAAAGCACCCACAGGCTAAAGCAATGCTTTGGTTCTGTTTTGTCCCTCTATACTGTTAGCAGTAATGTAAATGCTTGGAAACTCGAAGCATGTCATCTGTTTTTTGCTTTATCATTAATTGCTTGTCATTGACTTGATTATGCACAAGTCTGAAAGCACATTGTGCTTTGTCTGTTGTTGTGAGATGAATGACTTTTTTGTCTAAAAATATCTGTACCCTTTTTCGGAGTTGTTTGTAGTACATTGTGTTTTTTATAAATCCGGAATAATTTGTCTTTTCCCTGTAGCTATGTTGTGCATCTGTTATGTACACTGTAGTTTGGGTTTAAATAAAGATTACAACTTTTATAAGCTCTGGTTTGTTTCGTAGAGTAAATTATTGGTTTGTTTACTAAATTAACAGTAGCTTTATTATCTAAAGTGCAAGGACACTATGCTTTCAGAGGAAACCAATCTGCATGCATTTGTTACAGTACACTGAACAGCTCAGCACTCAACTTAATATGGCAAAATGtgttaacatttaaatgtaatattaactgATAAAATAACAGTACTCAAGtttggtggaaaaaaataatttaaaggggtggtctactgtgtatttttaaggcttggttgtgttgtaaaagatgcaaagcaatgtgtgctcatgcttcatttgtagaaagtcatgttatttttttatatcttactttgattatatacagcaaggcagctaacatgaaaatgacagtcatatttcctagttcctctgaaaggcccgccctcaaaaGGCTCTGATCGGTCAGCTAacatgtgctgtgatttgcggatCGGCTCGCATCATGCCCCTACAAGCCCACGCCTTGGTGCTGTGTAAACAGTAGCTGAATCGGACAGAAAATGAAGTACAGTGCACATCGATAAAcatcacgcctgctctctaaaataaaatctctcAAGCGTCTTTTACATATATtgggaataagcatgtgtaagtaatataaacttttcacatttcttttgcgagtttgttatttgagatgtaaaaCGCACGGAAAGCGTCTACATACTgtagagacactgcagcgctagTGAAGACTGGGTGTTTACAAgtgtttgactgataaatatgaatttgtagctaaattgttagcggtgccaaacagcatttcctgttgtttacatcctcgctacagcataccgttaacactagaaactgtgtatgtaattaatcaattttaactaataaaaacaggttgtggctcacaattcaTCAATTgaaggagtttttagctgaatccagctcTGAACTGAGAcagattctggaagttctcctttgtcaaatgttagctctctctctctctctctctctctctctctctctctctctctctatatatatatatatatatatatatatattttttttttttattttattttttttttttattctctggaatgtaattaaaatgaaattg
>TCONS_00018262
AGATACGTAAGCGCTTTGGAGAATGGAAAGACTCTACGCACAACGTGCATAGTACGCCATTCCGCTGAGCACAAAACCACCGTACAACTACAGTCACTGGCGAGAAACTGCTTTTAACTTAGACGCTGCCATGGCAGCTCCTTTCCCCTACAGAGGTCTTCCTGGACCAATGCCTCCAGGTGttcctccacctcctcctgcTGTTGCTCCAGTGCCAGATTATATGACTGAGGAGAAACTGCAAGAGAAAGCTCGTAAATGGCAGCAGCTGCAGGCCAAGCGCTACTCTGAGAAAAGGAAATTTGGCTTCGTGGATGCTCAGAAAGAGGACATGCCACCAGAACATGTGCGCAAAATTATCAGGGATCATGGTGACATGACGAACAGGAAATTTCGTCATGATAAAAGAGTCTACCTAGGGGCCCTGAAGTATATGCCCCATGCAGTGCTCAAACTGCTGGAGAACATGCCAATGCCCTGGGAGCAGATCAGAGATGTACCTGTGCTCTACCACATCACAGGCGCTATATCTTTCGTGAATGAAATCCCTTGGGTTATTGAGCCAGTGTACATTTCTCAGTGGGGCACAATGTGGATCATGATGCGTCGTGAGAAGAGAGACAGACGGCACTTCAAGCGCATGCGTTTCCCGCCATTTGATGATGAAGAGCCTCCTTTGGATTATGCAGACAACATCCTGGATGTGGAGCCTCTGGAGGCGATCCAGATGGAGCTGGACCCTGATGAGGACTCTTCTGTCACAGACTGGCTCTATGAGCATCAACCTCTGAAAGACACCACCAAATACGTGAATGGGACCACATACAGACGATGGCAATTCACTTTGCCAATGATGTCCACTCTGTATCGATTGGCTAATCAGCTGCTGACAGACTTGGTGGATGACAATTACTTTTACTTGTTTGACTTGAAAGCTTTCTTCACCTCTAAAGCTTTGAACATGGCCATTCCTGGAGGACCTAAATTTGAGCCACTTGTCAGAGACATTAACCTCCAGGATGAAGACTGGAATGAGTTCAATGACATCAACAAGATCATCATCAGACAGCCAATCAGGACAGAATACAAAATTGCATTCCCTTACTTGTACAACAATCTGCCACATCATGTGCACCTCACCTGGTACCATACACCAAATGTGGTGTTCATCAAGACTGAAGATCCTGATCTACCCGCCTTCTACTTTGACCCTCTGATCAACCCCATCTCTCATAGGCACTCAGTCAAGAGCCAAGAGCCACTGCCAGATGATGATGAGGAGTTTGAACTTCCTGAGTATGTAGAGCCGTTCCTGAAGGAGACGCCGCTTTACACTGACAACACTGCTAATGGAATCGCTCTGTTGTGGGCACCTCGTCCATTCAATCTCCGCTCTGGAAGAACCAGACGAGCCATTGATGTTCCTCTCGTCAAAAACTGGTATCGTGAGCACTGTCCTGCAGGCCAGCCTGTGAAGGTGCGTGTGTCTTACCAGAAGCTTCTGAAGTACTATGTGTTGAATGCTCTAAAACACAGACCACCAAAGGCACAGAAAAAGAGATACCTGTTCCGCTCTTTCAAGGCCACCAAATTCTTCCAGTCAACAAAGCTGGACTGGGTAGAAGTCGGACTCCAGGTGTGCCGGCAGGGCTACAACATGCTGAACCTGCTGATTCACAGAAAGAACCTGAACTACCTGCACTTGGACTACAACTTCAACTTGAAGCCTGTAAAAACCCTCACAACAAAGGAACGTAAGAAGTCTAGATTCGGAAATGCGTTTCACTTGTGCCGTGAGGTTCTGCGCTTGAGCAAGCTGGTGGTGGACAGTCATGTACAGTACAGGCTTGGAAATGTTGATGCTTTCCAGCTTGCTGATGGCTTGCAGTACATCTTTGCCCATGTGGGTCAACTGACTGGCATGTACCGCTACAAGTACAAGCTCATGAGGCAGATCAGAATGTGCAAAGACCTGAAGCATCTCATCTACTATCGCTTCAACACAGGCCCAGTTGGAAAAGGTCCAGGCTGTGGGTTCTGGGCACCAGGATGGAGAGTCTGGCTGTTCTTCATGAGAGGCATTACCCCTCTTTTGGAGCGGTGGCTCGGCAATCTTCTGGCTAGGCAGTTTGAGGGTCGACACTCTAAGGGTGTTGCCAAGACTGTGACCAAACAGCGTGTGGAATCTCACTTTGATCTGGAGCTGAGAGCTGCTGTGATGCATGACATCCTGGATATGATGCCTGAGGGTATCAAGCAAAACAAGGCCAGAACCATCTTGCAGCACCTCAGTGAGTCATGGAGATGCTGGAAGGCCAACATTCCTTGGAAGGTTCCTGGGCTTCCAACTCCCATCGAGAACATGATTCTTCGTTACGTGAAGGCTAAAGCTGACTGGTGGACCAACACGGCTCACTACAACCGTGAGAGAATCAGAAGAGGAGCAACTGTGGATAAGACTGTGTGCAAGAAGAACTTGGGACGTCTCACTCGACTCTACCTAAAAGCAGAGCAGGAGAGACAGCACAATTACCTGAAGGATGGGCCTTACATCACAGCTGAGGAGGCCGTGGCCATCTACACCACCACAGTGCACTGGCTGGAGAGTCGTCGGTTCTCTCCGATTCCCTTCCCTCCTCTCTCCTACAAGCATGACACCAAGCTGCTCATTCTGGCGTTGGAGAGACTCAAGGAAGCTTACAGtgtgAAGTCTAGGCTGAACCAGTCACAGCGTGAGGAGTTGGGTCTGATTGAGCAGGCCTATGACAACCCTCATGAGGCTCTGTCCAGAATCAAACGTCACCTCCTCACTCAGAGAGCCTTCAAAGAGGTTGGCATTGAGTTCATGGACCTTTACAGTCACTTGGTGCCGGTTTATGATGTTGAACCTTTGGAAAAGATCACTGACGCATACCTGGATCAGTACCTGTGGTACGAGGCAGACAAACGTAGGCTTTTCCCACCCTGGATCAAACCAGCTGACACAGAGCCACCACCACTGCTGGTGTACAAATGGTGCCAAGGAATCAACAACTTGCAGGATGTATGGGAGACAGCAGAGGGTGAATGTAATGTTATGCTGGAGTCTCGCTACGAGAAGATGTATGAGAAGATTGATCTGACGCTGCTGAACAGGCTTCTGCGTCTCATTGTTGATCACAACATTGCTGATTACATGACAGCTAAAAACAACGTTGTCATTAACTATAAGgaCATGAACCATACAAACTCGTACGGTATCATTCGTGGCCTGCAGTTTGCCTCTTTCATTGTGCAGTACTATGGACTTGTGATGGACCTGCTGGTGCTGGGTCTGCACAGAGCCAGTGAGATGGCAGGACCTCCTCAGATGCCTAATGATTTCCTCAGCTTCCAGGATACGGCCACTGAGAGCGCGCATCCCATCCGTCTGTACTGCAGATATATAGACCGCATTCATATCTTCTTCAGGTTCTCTGCTGATGAGGCCAGAGATTTGATCCAGAGGTACCTGACTGAGCACCCGGACCCCAACAATGAGAACATTGTGGGGTACAACAATAAGAAATGCTGGCCTCGAGATGCTAGGATGAGACTGATGAAACATGATGTCAACTTGGGTCGTGCTGTGTTCTGGGACATCAAAAATCGCCTCCCTCGTTCAGTGACCACAATTCAATGGGAGAACAGTTTTGTGTCTGTGTACAGCAAGGACAACCCCAATCTGCTCTTTAACATGTGTGGCTTTGAGTGTCGCATACTCCCGAAGTGTCGCACTAGTTATGAGGAGTTCACTCACAAAGATGGTGTTTGGAATTTGCAGAATGAGGTAACAAAAGAAAGGACAGCACAGTGTTTCCTGCGTGTAGATGATGAGTCCATGCAAAGGTTCCACAATAGAGTGCGACAAATTTTGATGGCTTCTGGGTCCACCACTTTCACCAAGATCGTGAATAAGTGGaacactgctctgattggtctgatgacctaCTTCCGTGAAGCTGTGGTCAACACTCAAGAGCTTCTGGACCTGTTGGTGAAGTGTGAGAATAAGATCCAAACCCGTATCAAGATTGGGTTGAACTCCAAAATGCCCAGCCGTTTTCCTCCTGTGGTGTTTTATACCCCTAAGGAGTTGGGTGGATTGGGAATGCTTTCCATGGGACACGTACTGATCCCACAGTCTGACCTTAGGTGGTCCAAACAGACCGATGTGGGTATCACTCATTTCCGCTCTGGTATGAGTCATGAGGAGGATCAGCTTATTCCTAATCTGTACCGCTACATCCAGCCATGGGAGAGTGAGTTCATTGATTCTCAGAGAGTTTGGGCTGAATATGCCCTCAAGCGACAGGAGGCCATTGCTCAGAACAGACGTTTGACACTGGAGGATTTGGAGGACTCCTGGGACAGAGGTATTCCACGTATCAACACCCTCTTCCAGAAGGACAGACATACTCTTGCTTATGATAAGGGCTGGAGAGTCAGAACAGACTTCAAGCAATACCAGgtGCTGAAGCAAAATCCATTCTGGTGGACTCACCAAAGGCATGATGGAAAACTATGGAATTTGAACAATTACCGAACAGACATGATCCAGGCACTTGGAGGGGTTGAAGGCATTCTTGAGCACACACTGTTCAAGGGTACCTACTTCCCTACCTGGGAGGGTCTCTTCTGGGAGAAGGCCAGTGGTTTTGAAGAGTCTATGAAATGGAAGAAGCTCACTAATGCTCAGAGATCTGGTCTGAACCAGATTCCTAACCGACGATTCACCTTGTGGTGGTCTCCTACCATCAACAGAGCCAACGTATATGTAGGTTTCCAAGTGCAGTTGGACCTCACTGGAATCTTCATGCATGGTAAAATCCCAACCCTCAAGATCTCTTTGATCCAGATCTTCAGAGCTCACTTGTGGCAGAAAATTCATGAGAGCATTGTCATGGATCTCTGTCAGGTGTTTGACCAAGAGCTGGATGCTTTGGAGATTGAGACTGTCCAAAAAGAGACAATCCATCCCAGGAAGTCTTACAAGATGAATTCCTCCTGTGCGGACATTCTTCTGTTTGCCTCCTACAAGTGGAATGTCTCACGCCCCTCACTTCTAGCAGATTCCAAGGATGTAATGGACAGCACCACCACACAGAAATTCTGGATTGACATTCAGCTCAGATGGGGTGACTATGACTCTCATGACATTGAGAGATATGCCAGGGCCAAGTTCTTGGACTACACCACTGACAACATGAGTATTTACCCATCACCCACTGGAGTTCTGATTGCCATTGATCTGGCCTACAATCTTCACAGTGCCTATGGAAACTGGTTTCCCGGAGCCAAGCCTCTGATCCAGCAGGCAATGGCAAAGATAATGAAGGCCAATCCGGCTCTGTATGTGTTAAGAGAGCGAATCCGCAAGGGTCTGCAACTCTACTCTTCAGAGCCCACTGAGCCTTACCTGTCCTCCCAGAACTATGGAGAGCTCTTCTCAAACCAGATCATCTGGTTTGTAGATGACACCAATGTGTACAGAGTCACCATCCACAAGACCTTTGAAGGTAACTTGACCACCAAACCCATCAATGGAGCCATTTTCATCTTCAACCCCAGAACTGGACAGCTTTTCTTGAAGATCATTCACACTTCTGTATGGGCTGGACAAAAGCGTCTTGGACAGTTGGCTAAGTGGAAGACTGCTGAAGAAGTGGCTGCCCTGATCCGATCGCTGCCTGTTGAAGAGCAGCCCAAACAGATTATTGTGACCAGGAAGGGCATGTTGGATCCTCTTGAGGTGCACTTGCTGGACTTCCCCAACATTGTAATCAAAGGCTCTGAGCTCCAGCTCCCCTTCCAGGCCTGTTTGAAAGTGGAGAAGTTTGGAGACCTCATTCTGAAGGCCACAGAGCCTCAGATGGTCCTGTTCAATCTGTATGACGACTGGCTGAAGACCATCTCCTCTTACACTGCATTCTCTCGTTTGATTTTGATCCTGAGAGCGCTTCATGTCAACAATGATCGTGCCAAAGTTATTCTGAAACCTGACAAGACCACCATTACCGAGCCCCACCACATCTGGCCCACTCTGACGGATGAGGAGTGGATCAAAGTGGAGGTGCAGCTCAAAGATCTCATCCTGGCTGACTATGGCAAGAAGAACAATGTGAATGTGGCATCTTTGACTCAGTCTGAAATCAGGGACATCATCCTGGGAATGGAAATCTCTGCTCCATCCCAGCAGAGACAGCAGATCGCTGAGATTGAGAAGCAGACCAAAGAGCAGTCTCAGCTTACGGCCACTCAGACTCGCACAGTCAACAAACACGGAGATGAGATCATCACCTCCACCACCAGCAACTACGAGACGCAGACCTTCTCTTCCAAAACTGAATGGAGAGTAAGGGCGATCTCTGCTGCAAACTTGCACTTGCGTACCAACCACATCTATGTGTCATCGGATGACATCAAAGAAACGGGCTACACTTACATCCTGCCCAAGAACGTTCTGAAGAAGTTCATCTGCATCTCAGATCTGCGTGCTCAGATTGCAGGTTACCTGTATGGAACCAGCCCTCCAGATAACCCTCAGGTGAAGGAGATCCGCTGTATTGTGATGGTGCCACAGTGGGGTACACATCAGACCGTTCACCTTCCCAACCAACTGCCACAACACGAGTACTTGAAGGAAATGGAGCCTCTTGGATGGATCCATACACAGCCCAATGAATCGCCCCAGCTCTCTCCTCAGGATGTCACCACCCATGCAAAGGTCATGGCTGACAACCCATCCTGGGATGGCGAAAAGACTATCATTATCACTTGCAGCTTCACCCCTGGTTCCTGCACACTGACGGCCTACAAGCTGACTCCCAGTGGATATGAGTGGGGTCGACAAAACACAGATAAGGGTAATAACCCCAAAGGTTACTTGCCTTCACACTATGAAAGGGTTCAGATGCTTTTGTCTGACCGTTTCCTTGGCTTCTTCATGGTGCCTGGCCAAGTCTCCTGGAACTACAACTTCATGGGTGTCCGCCATGATCCCAACATGAAGTATGACCTGCAGTTGGCCAATCCGAAAGAGTTCTACCATGAAGTCCACAGACCGTCTCACTTCCTCAATTTTGCTTCTCTGCAGGAGGGTGAAATCTACAATGCTGACCGTGAGGATATGTATGCATAAGTACAAACAGAGACTATTTAAAGTAAAAGCACCCACAGGCTAAAGCAATGCTTTGGTTCTGTTTTGTCCCTCTATACTGTTAGCAGTAATGTAAATGCTTGGAAACTCGAAGCATGTCATCTGTTTTTTGCTTTATCATTAATTGCTTGTCATTGACTTGATTATGCACAAGTCTGAAAGCACATTGTGCTTTGTCTGTTGTTGTGAGATGAATGACTTTTTTGTCTAAAAATATCTGTACCCTTTTTCGGAGTTGTTTGTAGTACATTGTGTTTTTTATAAATCCGGAATAATTTGTCTTTTCCCTGTAGCTATGTTGTGCATCTGTTATGTACACTGTAGTTTGGGTTTAAATAAAGATTACAACTTTTATAA

Function

symbol description
prpf8 Predicted to enable pre-mRNA intronic binding activity and snRNA binding activity. Acts upstream of or within spliceosomal tri-snRNP complex assembly. Predicted to be located in nucleus. Predicted to be part of U5 snRNP and catalytic step 2 spliceosome. Is expressed in brain. Human ortholog(s) of this gene implicated in retinitis pigmentosa and retinitis pigmentosa 13. Orthologous to human PRPF8 (pre-mRNA processing factor 8).

GO:

id name namespace
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0000244 spliceosomal tri-snRNP complex assembly biological_process
GO:0071013 catalytic step 2 spliceosome cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005682 U5 snRNP cellular_component
GO:0017070 U6 snRNA binding molecular_function
GO:0097157 pre-mRNA intronic binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0030619 U1 snRNA binding molecular_function
GO:0030620 U2 snRNA binding molecular_function
GO:0030623 U5 snRNA binding molecular_function

KEGG:

id description
ko03040 Spliceosome
ko03041 Spliceosome

ZFIN:

id description
ZDB-GENE-030131-577 Predicted to enable pre-mRNA intronic binding activity and snRNA binding activity. Acts upstream of or within spliceosomal tri-snRNP complex assembly. Predicted to be located in nucleus. Predicted to be part of U5 snRNP and catalytic step 2 spliceosome. Is expressed in brain. Human ortholog(s) of this gene implicated in retinitis pigmentosa and retinitis pigmentosa 13. Orthologous to human PRPF8 (pre-mRNA processing factor 8).

Ensembl:

ensembl_id ENSDARG00000026180

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00018261 False 8641 mRNA 0.46 43 28248052 28262709
TCONS_00018262 True 7534 mRNA 0.48 42 28249167 28262632

Neighbor

gene id symbol gene type direction distance location
XLOC_009289 rilp coding downstream 469 28227058 ~ 28247583 (-)
XLOC_009288 scarf1 coding downstream 24146 28208440 ~ 28223906 (-)
XLOC_009287 sarm1 coding downstream 48003 28188362 ~ 28200049 (-)
XLOC_009286 foxn1 coding downstream 86828 28129683 ~ 28161224 (-)
XLOC_009285 cryba1a coding downstream 140547 28086193 ~ 28107505 (-)
XLOC_009291 CR478288.1 coding upstream 94136 28356845 ~ 28357872 (-)
XLOC_009292 CR478288.2 coding upstream 112804 28375513 ~ 28375627 (-)
XLOC_009293 git1 coding upstream 168912 28431621 ~ 28480576 (-)
XLOC_009294 NA coding upstream 237337 28500046 ~ 28541766 (-)
XLOC_009295 ssh2a coding upstream 282434 28545143 ~ 28587490 (-)
XLOC_009284 NA non-coding downstream 232924 28010730 ~ 28015128 (-)
XLOC_009280 NA non-coding downstream 291890 27784550 ~ 27956162 (-)
XLOC_009281 CR391930.2 non-coding downstream 324959 27922978 ~ 27923093 (-)
XLOC_009278 NA non-coding downstream 586935 27660245 ~ 27661117 (-)
XLOC_009277 AL954187.3 non-coding downstream 593760 27654176 ~ 27654292 (-)
XLOC_009296 NA non-coding upstream 331834 28594543 ~ 28596509 (-)
XLOC_009299 BX950186.1 non-coding upstream 472218 28734927 ~ 28735041 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000072_04818513_04830986 PRPF8, PRPF8.S coding CI01000072 null 4818145 ~ 4831797 (-)
bowfin (Amia calva) AMCG00005793 prpf8,LOC102787788 coding CM030142.1 CM030142.1 8805151 ~ 8818446 (-)