XLOC_009293 (git1)


Basic Information

Item Value
gene id XLOC_009293
gene name git1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 28431621 ~ 28480576 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00018265
CGGCCCCCGCCTGTGCACTGACGACAGTGGGGCAAAAGAGAGAAAGCGAGAGGCAGACGTCAGAGAGAGGGATATGCAGCCCGCCATACAGAAGTGTATGGGGCAGTGGATGTAAATAAACCGTGTACAGTATCCATACTTTACTTATTCCCACCCCCTTTTGCCTAAGAGACGGGCTTGGATAATGATCGGGGTAAAAAGATTATGGGGGCCACTCAAAATTAAACTGATTACGTCCGAAATCTGATAACGTAAGGGGCCTTCTGAAAATCTCATTCATCTTTGGGAATCGCAAAGTCCTCGTAGCGGCACGACAGAAGACACCGCAGGAAAAAggaaggagagaaagagagagagaagggtgAGGACCGGGAGCACTGGAGAGCTCGTCGCCGGCTTCCGGACATTTCGGGGCGGCATTAAAATCGCAGACGTCGCTCCTGGAGGGAAGGAAAACCAGATATCTTCAGCACTGGACTAAAATTTCTGGAAGCAGCAGCTTTTGATTCAGCGATGTCCAGGAAAGTCCAGAGAAGCGAGGTGTGCGCCGACTGCAGTGCACCAGACCCGGGCTGGAGCAGTATAAACCGAGGAGTCCTGATCTGCGATGAGTGCTGTTCTGTACACCGGAGCCTGGGCCGTCACATTTCCATCGTCAAACACTTGAGACACAGCGGCTGGCCTCCTTCCTTACTGCAGATGGTGCAGACCCTGGCCAGTAACGGCGCTAACTCGATCTGGGAACACTCTCTGCTGGATCCAGCACAAGTTCAGAGTGGCCGCAGGAAACCAAACCCACAAGATAAAGTCCACCCCACAAAGTCAGAGTTCATTCGCGCCAAGTACCAGATGTTAGCCTTTGTCCATAAGTTGCCCTGTCGTGATGACGACGGAGTCACTACTAAGGACCTTAGCAAGCAACTGCACTCAAGTGTGCGGACAGGAAGTCTGGAGACATGTTTACGGCTGCTGTCACTGGGGGCACAAGCCAACTTCTTCCACCCGGAAAAGGGCACAACCCCTCTCCATGTGGCTGCCAAAGCGGGACAGGTTCTCCAGGCTGAGCTGCTGGTTGTGTATGGAGCGGATCCGGGAGCTCCAGATATCAATGGCCGAACACCCATAGACTATGCACGGCAAGCGGGTCACGTGGAGTTGGCCGAACGCTTGGTGGAGTGTCAGTATGAGCTCACGGACAGACTGGCCTTCTACCTGTGTGGACGTCGCCCAGATCATAAGAATGGTCATTATATCATCCCTCAGATGGCAGACAGAGCTCGCCCTAAGTGCCCGACGCAGAGCCTGGACCTCTCTGAACTGGCCAAGGCAGCCAAGAAGAAGCTCCAAGCGTTAAATAATCGTTTGTTCGAGGAGCTGGCTATGGACGTGTACGATGAAGTGGACCGTAGAGAGAATGATGCAGTGTGGCTGACAACTCAGAACCACAGTACGCTGGTGACCGAACGGAGCGCTGTCCCATTCTTACCCGTCAATCCTGAATACTCAGCGACACGCAaccagGGGCGGCAGAAATTAGCACGCTTCAATGCGCGGGAATTCGCCACCCTCATTATCGACATCCTCAGCGACGCCAAGCGACGGCAACATGGAAAAGGCCTGACGAGCCCCACAGaCCCGCTGGATCTGAGTCAGGTGGACGATGACCAGCACGATTATGACAGCGTAGCGTCTGATGAAGACACAGACAGCGAGCTGACCGCACAGAATAATAACAACACCCAACGCAACAACCGGGCCAAGAGTATGGACTCGTCAGATCTGTCAGATGGACCAATCACACTACAGGAGTATCTGGAGGTGAAGAAAGCACTGGCTTCCTCTGAGGCTAAAGTTCAGCAGCTCATGAAGGTCAACAACAACCTGAGTGAGGAGCTGCGGAGGCTGCAGAaagagATCTCGCGGATGCAGACGGAGAACAGCGCGCTGCGGGGGGCCCAGGCTGGGTCGGGGGCCACCATGACTGGAGGTGGTGTTCCAGGACACTGGCCTGATAGAGTAAGGGGTATGGGTGGTGGAGGAGGGCTAAGTGGAGATTCCAGCCTAATTGCACCCTCGTCCACCCCCCACCGACGGGACAGGCAGGCTTTCTCTATGTATGAGCCTGTGGGCACCACCTCAAAAGTCCTCAGCCCAGCCCTGGACCCCCTGACTTGCCGCCTGCAGCCTCTCAGCCCTGTGCGAAAGGGCGCTCCAGCGGGTCCCACCCCATACGGAGGAGCGCACCTGTCAGCCTCCACTGACGGACGCTATAATCATCCAAAAGCAGGAGAGAAGTACGGGAGTGGGACTGATAGCGACTATGACAACTCTCAAACATATGACGTCTCCATTGGTGTGGGCCGCAGCAGTGAGGAGGACAGCAGGGGGGATGTAGACGACACCGAGGGCGATCCTGACCCCACACTGCCCTGCACAGAGGACGTCATCCTTAAAACTGAACAGGTCACCAAAAACATCCAGGAGCTCCTGAGAGCTGCTCAAGAGTTCAAGCACGACAGTTTTGTGCCATGCTCAGAGAAAATCCACTTAGCTGTGACAGAAATGGCCTCGCTGTTTCCCAAGAGACCAGCGCTGGATGCAGTACGTTCTTCCTTGAAGCTCCTGGCAGCAAGTGCGTCACGTTTGCAGGTGGAGTGTCGTAAAGCGGCGCCTTCGGACTCGTCGGCCAGTACAGTGGACTACCAGCTTCTTACCCAGCAGGTCATCCAGTGCGCATACGACATTGCCAAAGCCGCCAAGCAGCTGGTCACCATCACCACCCGCGAAAAAAAACAGTGACCCGTCCGGCACACTGGGCTCCATCGGGCAGGGGAAAAGACTGAGAAATGGGAGCAGACACTGAGTAAAAACTGACGGCTGGGAATCGTTAGTCAGGTGATGAAAAAAAAGTGCTATGAGGGAGCGAAGACGGAGTGATGAATCCAGCTCTGGGCATCTGGATGCAGAGATGTGGGAGAAGCCGAATGGAGCGGCCTGCTTTTCCTTGCACTCCTTTTCTTATATCTATATGGTTGAACACTACACAACAGAGGATTGATGGTCAGTGAGCGCATGGGCGGCTGCTGTTTGGTTCTTTTTGTGAAACACACAGGCACTCCTAACCTACAGAGAGCCAgaaatgttcatttgttttcAGTTTTCCATCTCCCTTTCgattgatttttgtgtttttaaagtgcCGCTCCATTGACTCGTTTCTCTTGGGACAAATGTATTGACTTGCGAAAACAACACACTGgagttattttaatgattatgacTTCTGTTTCATATTATTGTTACTGTTATTGATGTcttcttttgattttttattttattttaattttttttgtcacacAGAGCTTTGCGAACATTAACGGGGTGAACAGTAACCTGTGAAAACTAACCGGAACACTCCCGTCCTCCAGTGATAGAAGCACTGGTTCACTCACACAGTGTTTTActtcactattttgttttaatcaAGGTGTGTTGTACACTAGCCAAAGGAGCAGAGGAGAGTGAAGACACTACAGTTGCGGATTcctctgtttgtttgttgtttgtcgtGTTTGAGCACAAAGACAGAAGTTGGGGTACAAAaacgggggctcgtccgggatacgtCCCGGCTTTTCTCATCTCATTGCATCTCAATCCCTACGTTAGTGGGTTTGTTATCAGAACAATGCAAATGTGTTAGCACAATCATCACATTAGCTCATTAGTTTAGGACAAAACCACCCATTTCGGACACGATGTCTTTTACTTATTAGATTATCTGCACATGATTGACTTAATCGAATGGCCTTCATCAGTTTAGCAGAGACTCTTCTGGACCaggcttttttttgtgtgtgtggttggtTGTCCGTTTGAaaatatttgattttgatttcctgccgttgtttatttttcttgtttttaatttagcacacatctaatgtttttttaatgtaagaagACCCTAATTATGTTTCATAAGCTACAATCATGTGAATGTTGATGGTTGAAGATGACCACTATCAATGTTCTCAACACTAACATTTCAGAGACAGTGACAGGGAAAAATACGGGATGTCCATCTGCTGCATCAGGACCAGTGAAGTCACATTCTGTGGTGGTAGATGGGGCAATCGGGGTTTCTTTTTTGTTGAATTGGGGCAAATGAGCACCTCGCTTTATGGATGTTCATGGGAGAGGAGTTAAACTGGAGCTTTCAGGATAAACGCACATACATGAACGTTTATCCGCCTGAGGCTTGATGCCACGTTTGTGTGCGAGCGTGATCAAATCAAGTATTTGTTGTACAGTTACTTTGCATTTTTAGATGTCATGCTATGAGCCTTAAACCTCCTTTTTTCCATATTGGTTTTACCCACCAGCCTTTTAAGTTAAGCCATTTTTTCATTCTTGCCTTTTGTTTCTTGAACTTGGGGAATGGGATATTCTTAGCGTCCCTAAAAACGTGTCAAAAAGATTGTCTGATCATTGCCTTTGCACATCTGCTAGACTGACTTTAATCCGCAATCAAGTGACTGGcgtctctctctttcacactAGAAGCACATGGTGAGTAAAATCAGTGtatgcattgtttatttttattttttctagatTTTTAATTTCCCACTAAACATGTCACTGTTAGATGGTTTACTGTAATGATGCCTTGGGAGAAAGAGTTTGGGCCATTATTAAATAAGCACTAAATTCAGAGAGGATTATGGGAAAGGGAGTAATTGCACACACTAGGTCCAACTCTGATTCCTTTTGAAGTAGTTTGTAGGCATTTTCCCAGCAGTCCTGCTGCAGATGCATTCATTGTTCACGTAACGCACCAGTGGAATTATTTTTAAACCGACTAATTGACACTATTCTGTGATCAGTCATACTAGCTGCACCTACCTGTTAGGACTGTTCTTTATCACTCAGTTGTTCTTACTTGAGAGATTAGCTGATGGGTGAAATTCGTTTAGCAGAGGCTACCTgtaaaatatagaaattaaataaaagactaaGCAAAACCATTTAAATCGTAATAAAGACTCATAAGCTGTACATTTGTAATAAACAAAACCGAAAGTTCATTGtgtcctgtgttttttttttttatcaatgtgtTTTACA
>TCONS_00018266
GGCAAAAGAGAGAAAGCGAGAGGCAGACGTCAGAGAGAGGGATATGCAGCCCGCCATACAGAAGTGTATGGGGCAGTGGATGTAAATAAACCGTGTACAGTATCCATACTTTACTTATTCCCACCCCCTTTTGCCTAAGAGACGGGCTTGGATAATGATCGGGGTAAAAAGATTATGGGGGCCACTCAAAATTAAACTGATTACGTCCGAAATCTGATAACGTAAGGGGCCTTCTGAAAATCTCATTCATCTTTGGGAATCGCAAAGTCCTCGTAGCGGCACGACAGAAGACACCGCAGGAAAAAggaaggagagaaagagagagagaagggtgAGGACCGGGAGCACTGGAGAGCTCGTCGCCGGCTTCCGGACATTTCGGGGCGGCATTAAAATCGCAGACGTCGCTCCTGGAGGGAAGGAAAACCAGATATCTTCAGCACTGGACTAAAATTTCTGGAAGCAGCAGCTTTTGATTCAGCGATGTCCAGGAAAGTCCAGAGAAGCGAGGTGTGCGCCGACTGCAGTGCACCAGACCCGGGCTGGAGCAGTATAAACCGAGGAGTCCTGATCTGCGATGAGTGCTGTTCTGTACACCGGAGCCTGGGCCGTCACATTTCCATCGTCAAACACTTGAGACACAGCGGCTGGCCTCCTTCCTTACTGCAGATGGTGCAGACCCTGGCCAGTAACGGCGCTAACTCGATCTGGGAACACTCTCTGCTGGATCCAGCACAAGTTCAGAGTGGCCGCAGGAAACCAAACCCACAAGATAAAGTCCACCCCACAAAGTCAGAGTTCATTCGCGCCAAGTACCAGATGTTAGCCTTTGTCCATAAGTTGCCCTGTCGTGATGACGACGGAGTCACTACTAAGGACCTTAGCAAGCAACTGCACTCAAGTGTGCGGACAGGAAGTCTGGAGACATGTTTACGGCTGCTGTCACTGGGGGCACAAGCCAACTTCTTCCACCCGGAAAAGGGCACAACCCCTCTCCATGTGGCTGCCAAAGCGGGACAGGTTCTCCAGGCTGAGCTGCTGGTTGTGTATGGAGCGGATCCGGGAGCTCCAGATATCAATGGCCGAACACCCATAGACTATGCACGGCAAGCGGGTCACGTGGAGTTGGCCGAACGCTTGGTGGAGTGTCAGTATGAGCTCACGGACAGACTGGCCTTCTACCTGTGTGGACGTCGCCCAGATCATAAGAATGGTCATTATATCATCCCTCAGATGGCAGACAGCCTGGACCTCTCTGAACTGGCCAAGGCAGCCAAGAAGAAGCTCCAAGCGTTAAATAATCGTTTGTTCGAGGAGCTGGCTATGGACGTGTACGATGAAGTGGACCGTAGAGAGAATGATGCAGTGTGGCTGACAACTCAGAACCACAGTACGCTGGTGACCGAACGGAGCGCTGTCCCATTCTTACCCGTCAATCCTGAATACTCAGCGACACGCAaccagGGGCGGCAGAAATTAGCACGCTTCAATGCGCGGGAATTCGCCACCCTCATTATCGACATCCTCAGCGACGCCAAGCGACGGCAACATGGAAAAGGCCTGACGAGCCCCACAGaCCCGCTGGATCTGAGTCAGGTGGACGATGACCAGCACGATTATGACAGCGTAGCGTCTGATGAAGACACAGACAGCGAGCTGACCGCACAGAATAATAACAACACCCAACGCAACAACCGGGCCAAGAGTATGGACTCGTCAGATCTGTCAGATGGACCAATCACACTACAGGAGTATCTGGAGGTGAAGAAAGCACTGGCTTCCTCTGAGGCTAAAGTTCAGCAGCTCATGAAGGTCAACAACAACCTGAGTGAGGAGCTGCGGAGGCTGCAGAaagagATCTCGCGGATGCAGACGGAGAACAGCGCGCTGCGGGGGGCCCAGGCTGGGTCGGGGGCCACCATGACTGGAGGTGGTGTTCCAGGACACTGGCCTGATAGAGTAAGGGGTATGGGTGGTGGAGGAGGGCTAAGTGGAGATTCCAGCCTAATTGCACCCTCGTCCACCCCCCACCGACGGGACAGGCAGGCTTTCTCTATGTATGAGCCTGTGGGCACCACCTCAAAAGTCCTCAGCCCAGCCCTGGACCCCCTGACTTGCCGCCTGCAGCCTCTCAGCCCTGTGCGAAAGGGCGCTCCAGCGGGTCCCACCCCATACGGAGGAGCGCACCTGTCAGCCTCCACTGACGGACGCTATAATCATCCAAAAGCAGGAGAGAAGTACGGGAGTGGGACTGATAGCGACTATGACAACTCTCAAACATATGACGTCTCCATTGGTGTGGGCCGCAGCAGTGAGGAGGACAGCAGGGGGGATGTAGACGACACCGAGGGCGATCCTGACCCCACACTGCCCTGCACAGAGGACGTCATCCTTAAAACTGAACAGGTCACCAAAAACATCCAGGAGCTCCTGAGAGCTGCTCAAGAGTTCAAGCACGACAGTTTTGTGCCATGCTCAGAGAAAATCCACTTAGCTGTGACAGAAATGGCCTCGCTGTTTCCCAAGAGACCAGCGCTGGATGCAGTACGTTCTTCCTTGAAGCTCCTGGCAGCAAGTGCGTCACGTTTGCAGGTGGAGTGTCGTAAAGCGGCGCCTTCGGACTCGTCGGCCAGTACAGTGGACTACCAGCTTCTTACCCAGCAGGTCATCCAGTGCGCATACGACATTGCCAAAGCCGCCAAGCAGCTGGTCACCATCACCACCCGCGAAAAAAAACAGTGACCCGTCCGGCACACTGGGCTCCATCGGGCAGGGGAAAAGACTGAGAAATGGGAGCAGACACTGAGTAAAAACTGACGGCTGGGAATCGTTAGTCAGGTGATGAAAAAAAAGTGCTATGAGGGAGCGAAGACGGAGTGATGAATCCAGCTCTGGGCATCTGGATGCAGAGATGTGGGAGAAGCCGAATGGAGCGGCCTGCTTTTCCTTGCACTCCTTTTCTTATATCTATATGGTTGAACACTACACAACAGAGGATTGATGGTCAGTGAGCGCATGGGCGGCTGCTGTTTGGTTCTTTTTGTGAAACACACAGGCACTCCTAACCTACAGAGAGCCAgaaatgttcatttgttttcAGTTTTCCATCTCCCTTTCgattgatttttgtgtttttaaagtgcCGCTCCATTGACTCGTTTCTCTTGGGACAAATGTATTGACTTGCGAAAACAACACACTGgagttattttaatgattatgacTTCTGTTTCATATTATTGTTACTGTTATTGATGTcttcttttgattttttattttattttaattttttttgtcacacAGAGCTTTGCGAACATTAACGGGGTGAACAGTAACCTGTGAAAACTAACCGGAACACTCCCGTCCTCCAGTGATAGAAGCACTGGTTCACTCACACAGTGTTTTActtcactattttgttttaatcaAGGTGTGTTGTACACTAGCCAAAGGAGCAGAGGAGAGTGAAGACACTACAGTTGCGGATTcctctgtttgtttgttgtttgtcgtGTTTGAGCACAAAGACAGAAGTTGGGGTACAAAaacgggggctcgtccgggatacgtCCCGGCTTTTCTCATCTCATTGCATCTCAATCCCTACGTTAGTGGGTTTGTTATCAGAACAATGCAAATGTGTTAGCACAATCATCACATTAGCTCATTAGTTTAGGACAAAACCACCCATTTCGGACACGATGTCTTTTACTTATTAGATTATCTGCACATGATTGACTTAATCGAATGGCCTTCATCAGTTTAGCAGAGACTCTTCTGGACCaggcttttttttgtgtgtgtggttggtTGTCCGTTTGAaaatatttgattttgatttcctgccgttgtttatttttcttgtttttaatttagcacacatctaatgtttttttaatgtaagaagACCCTAATTATGTTTCATAAGCTACAATCATGTGAATGTTGATGGTTGAAGATGACCACTATCAATGTTCTCAACACTAACATTTCAGAGACAGTGACAGGGAAAAATACGGGATGTCCATCTGCTGCATCAGGACCAGTGAAGTCACATTCTGTGGTGGTAGATGGGGCAATCGGGGTTTCTTTTTTGTTGAATTGGGGCAAATGAGCACCTCGCTTTATGGATGTTCATGGGAGAGGAGTTAAACTGGAGCTTTCAGGATAAACGCACATACATGAACGTTTATCCGCCTGAGGCTTGATGCCACGTTTGTGTGCGAGCGTGATCAAATCAAGTATTTGTTGTACAGTTACTTTGCATTTTTAGATGTCATGCTATGAGCCTTAAACCTCCTTTTTTCCATATTGGTTTTACCCACCAGCCTTTTAAGTTAAGCCATTTTTTCATTCTTGCCTTTTGTTTCTTGAACTTGGGGAATGGGATATTCTTAGCGTCCCTAAAAACGTGTCAAAAAGATTGTCTGATCATTGCCTTTGCACATCTGCTAGACTGACTTTAATCCGCAATCAAGTGACTGGcgtctctctctttcacactAGAAGCACATGGTGAGTAAAATCAGTGtatgcattgtttatttttattttttctagatTTTTAATTTCCCACTAAACATGTCACTGTTAGATGGTTTACTGTAATGATGCCTTGGGAGAAAGAGTTTGGGCCATTATTAAATAAGCACTAAATTCAGAGAGGATTATGGGAAAGGGAGTAATTGCACACACTAGGTCCAACTCTGATTCCTTTTGAAGTAGTTTGTAGGCATTTTCCCAGCAGTCCTGCTGCAGATGCATTCATTGTTCACGTAACGCACCAGTGGAATTATTTTTAAACCGACTAATTGACACTATTCTGTGATCAGTCATACTAGCTGCACCTACCTGTTAGGACTGTTCTTTATCACTCAGTTGTTCTTACTTGAGAGATTAGCTGATGGGTGAAATTCGTTTAGCAGAGGCTACCTgtaaaatatagaaattaaataaaagactaaGCAAAACCATTTAAATCGTAATAAAGACTCATAAGCTGTACATTTGTAATAAACAAAACCGAAAGTT

Function

symbol description
git1 Predicted to enable GTPase activator activity and metal ion binding activity. Acts upstream of or within angiogenesis. Is expressed in head. Human ortholog(s) of this gene implicated in attention deficit hyperactivity disorder. Orthologous to human GIT1 (GIT ArfGAP 1).

GO:

id name namespace
GO:0001525 angiogenesis biological_process
GO:0001568 blood vessel development biological_process
GO:0005096 GTPase activator activity molecular_function
GO:0046872 metal ion binding molecular_function

KEGG:

id description
ko04144 Endocytosis
ko04810 Regulation of actin cytoskeleton
ko05120 Epithelial cell signaling in Helicobacter pylori infection
ko04131 Membrane trafficking

ZFIN:

id description
ZDB-GENE-100408-5 Predicted to enable GTPase activator activity and metal ion binding activity. Acts upstream of or within angiogenesis. Is expressed in head. Human ortholog(s) of this gene implicated in attention deficit hyperactivity disorder. Orthologous to human GIT1 (GIT ArfGAP 1).

Ensembl:

ensembl_id ENSDARG00000039489

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00018265 False 5130 mRNA 0.48 21 28431621 28480576
TCONS_00018266 True 5031 mRNA 0.48 20 28431663 28480546

Neighbor

gene id symbol gene type direction distance location
XLOC_009292 CR478288.2 coding downstream 55994 28375513 ~ 28375627 (-)
XLOC_009291 CR478288.1 coding downstream 73749 28356845 ~ 28357872 (-)
XLOC_009290 prpf8 coding downstream 168912 28248052 ~ 28262709 (-)
XLOC_009289 rilp coding downstream 184038 28227058 ~ 28247583 (-)
XLOC_009288 scarf1 coding downstream 207715 28208440 ~ 28223906 (-)
XLOC_009294 NA coding upstream 19470 28500046 ~ 28541766 (-)
XLOC_009295 ssh2a coding upstream 64567 28545143 ~ 28587490 (-)
XLOC_009296 NA coding upstream 113967 28594543 ~ 28596509 (-)
XLOC_009297 slc6a4a coding upstream 128449 28609025 ~ 28618502 (-)
XLOC_009298 blmh coding upstream 154004 28634580 ~ 28805493 (-)
XLOC_009284 NA non-coding downstream 416493 28010730 ~ 28015128 (-)
XLOC_009280 NA non-coding downstream 475459 27784550 ~ 27956162 (-)
XLOC_009281 CR391930.2 non-coding downstream 508528 27922978 ~ 27923093 (-)
XLOC_009299 BX950186.1 non-coding upstream 254351 28734927 ~ 28735041 (-)
XLOC_009300 NA non-coding upstream 277879 28758455 ~ 28772574 (-)
XLOC_009303 NA non-coding upstream 524468 29005044 ~ 29009059 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000072_04932845_04949502 GIT1 coding CI01000072 null 4932700 ~ 4949502 (-)
bowfin (Amia calva) AMCG00018710 git2 coding CM030135.1 CM030135.1 18846576 ~ 18869867 (+)